Metagenome Family F100477

Basic Information
Family ID	F100477
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	70 residues
Representative Sequence	MKSIQLSSIKKKIGAENFSVLRETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITSKVDWFVIDVV
Number of Associated Samples	81
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.00 %
% of genes near scaffold ends (potentially truncated)	29.41 %
% of genes from short scaffolds (< 2000 bps)	78.43 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (81.373 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine (12.745 % of family members)
Environment Ontology (ENVO)	Unclassified (41.176 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (60.784 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 12200099135 2M3P_100055605 3JGI12421J11937_100510534 4RCM35_11309411 5RCM31_102107202 6RCM31_103578612 7B570J29624_1122552 8B570J29032_1094719363 9B570J40625_1000212774 10B570J40625_1002956331 11Ga0065166_100779112 12Ga0065166_102481142 13Ga0068876_101144691 14Ga0068876_107833902 15Ga0049081_100197633 16Ga0049080_100892211 17Ga0078894_1000340818 18Ga0078894_101241534 19Ga0078894_101826941 20Ga0078894_101975583 21Ga0078894_116280322 22Ga0079957_11243171 23Ga0070743_102443641 24Ga0102977_12130801 25Ga0102853_100006927 26Ga0102817_10028094 27Ga0102817_10087183 28Ga0102828_11537071 29Ga0102917_11862452 30Ga0102902_11097043 31Ga0102859_11961651 32Ga0105737_11828222 33Ga0105747_12643691 34Ga0114340_100267618 35Ga0114340_12728332 36Ga0114341_100415275 37Ga0114343_10136105 38Ga0114346_11551843 39Ga0114346_11848074 40Ga0114346_12718231 41Ga0114350_10740032 42Ga0114840_10083763 43Ga0114336_13337031 44Ga0114364_11455341 45Ga0114364_11474871 46Ga0102811_14227381 47Ga0102829_10430702 48Ga0114966_101995643 49Ga0114969_100419485 50Ga0114971_100568272 51Ga0114982_10097655 52Ga0102883_11660432 53Ga0129336_104933811 54Ga0151620_12012591 55Ga0157140_100081542 56Ga0164293_102671422 57Ga0164295_100414214 58Ga0181607_105613572 59Ga0181600_103250332 60Ga0211732_13884123 61Ga0211732_14680021 62Ga0211736_100271304 63Ga0211736_103707642 64Ga0211736_108417043 65Ga0211734_106941975 66Ga0211734_108201661 67Ga0211733_104413113 68Ga0211735_104166574 69Ga0208234_10229932 70Ga0208601_10574112 71Ga0208723_10610631 72Ga0213922_10172262 73Ga0222715_105558621 74Ga0222714_102428292 75Ga0222712_104823362 76Ga0244775_101237272 77Ga0244775_107185251 78Ga0255105_10525651 79Ga0208675_10442321 80Ga0255134_10258022 81Ga0255140_10811692 82Ga0208923_10275411 83Ga0208923_11004622 84Ga0255125_10364651 85Ga0255118_10423231 86Ga0255117_10231914 87Ga0255117_10967281 88Ga0208974_10693571 89Ga0209597_10415732 90Ga0209668_110332342 91Ga0247722_1000055825 92Ga0315899_102970505 93Ga0315899_110953322 94Ga0315909_107460971 95Ga0315905_112190071 96Ga0335019_0440413_2_208 97Ga0334990_0698515_1_186 98Ga0335020_0523686_358_558 99Ga0335017_0344486_1_216 100Ga0335007_0319022_2_205 101Ga0335013_0409343_180_398 102Ga0335064_0072980_25_237
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 12200099135 2JGI12421J11937_100510534 3RCM31_103578612 4Ga0078894_116280322 5Ga0070743_102443641 6Ga0105747_12643691 7Ga0244775_101237272 8Ga0315905_112190071
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86 12200099135 2JGI12421J11937_100510534 3RCM31_103578612 4Ga0078894_116280322 5Ga0070743_102443641 6Ga0105747_12643691 7Ga0244775_101237272 8Ga0315905_112190071
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.56% β-sheet: 6.94% Coil/Unstructured: 37.50%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00574	CLP_protease	51.96
PF14882	INT_rpt	1.96
PF13589	HATPase_c_3	0.98
PF02086	MethyltransfD12	0.98
PF03063	Prismane	0.98
PF02963	EcoRI	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	103.92
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	103.92
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	51.96
COG0338	DNA-adenine methylase	Replication, recombination and repair [L]	0.98
COG1151	Hydroxylamine reductase (hybrid-cluster protein)	Energy production and conversion [C]	0.98
COG1152	CO dehydrogenase/acetyl-CoA synthase alpha subunit	Energy production and conversion [C]	0.98
COG3392	Adenine-specific DNA methylase	Replication, recombination and repair [L]	0.98

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	18.63 %
Unclassified	root	N/A	81.37 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	3.92 %
Unclassified	root	N/A	81.37 %
Viruses	superkingdom	All Organisms → Viruses	14.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.71 %
Unclassified	root	N/A	81.37 %

Scaffold	Taxonomy	Length	IMG/M Link
2199352004\|2199913575	Not Available	597	Open in IMG/M
3300000206\|M3P_c10005560	Not Available	1495	Open in IMG/M
3300000756\|JGI12421J11937_10051053	Not Available	1341	Open in IMG/M
3300001844\|RCM35_1130941	Not Available	502	Open in IMG/M
3300001851\|RCM31_10210720	Not Available	715	Open in IMG/M
3300001851\|RCM31_10357861	Not Available	673	Open in IMG/M
3300002363\|B570J29624_112255	Not Available	502	Open in IMG/M
3300002408\|B570J29032_109471936	Not Available	790	Open in IMG/M
3300002835\|B570J40625_100021277	All Organisms → cellular organisms → Bacteria	10911	Open in IMG/M
3300002835\|B570J40625_100295633	All Organisms → cellular organisms → Bacteria	1646	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.04%
Terrestrial	Environmental → Terrestrial	1.96%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.96%
Freshwater	Environmental → Aquatic → Freshwater	74.51%
Marine	Environmental → Aquatic → Marine	23.53%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	2.94%
Creek	Environmental → Aquatic → Freshwater → Creek	0.98%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	14.71%
Lake	Environmental → Aquatic → Freshwater → Lake	34.31%
Lentic	Environmental → Aquatic → Freshwater → Lentic	22.55%
Lotic	Environmental → Aquatic → Freshwater → Lotic	5.88%
River	Environmental → Aquatic → Freshwater → River	6.86%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.92%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.96%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	6.86%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	12.75%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.98%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.96%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	34.31%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	13.73%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	6.86%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.94%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.98%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.98%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	12.75%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	2.94%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.94%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.96%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	8.82%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	8.82%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	6.86%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	6.86%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.92%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.98%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.98%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.98%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.98%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.98%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	8.82%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	3.92%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.98%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.98%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.94%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.98%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	11.76%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.98%
Lotic	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic	0.98%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	2.94%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.96%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352004	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion	Environmental	Open in IMG/M
3300000206	Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters	Environmental	Open in IMG/M
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300001844	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM35, ROCA_DNA220_0.2um_bLM_C_3a	Environmental	Open in IMG/M
3300001851	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b	Environmental	Open in IMG/M
3300002363	Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 81 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2200099135	2199352004	Freshwater	MKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWLVVDVV
M3P_100055605	3300000206	Lotic	MMKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWLVVDVV*
JGI12421J11937_100510534	3300000756	Freshwater And Sediment	IGAESYSVVRDTILKSSYDRPSKGMTLQRDKVVNSITDPIVKKSLENLTSKVDWFVIDVV
RCM35_11309411	3300001844	Marine Plankton	QLSSIKKKIGAENFSVLRDTIFKSSIDRPSRGMTLQKERIVNAIKDPQVKKSLENITSKVDWFVVDVV*
RCM31_102107202	3300001851	Marine Plankton	MKSIQLSSIKKKIGAENFSVLRDTIFKSSIDRPSRGMTLQKERIVNAIKDPQVKKSLENITSKVDWFVVDVV*
RCM31_103578612	3300001851	Marine Plankton	MKKIQLSSIKKKIGADKFSVIKDNIFKNAFDRPSKGMTLQRDRVVNSITDPNVKKTLESITSNVDWFVIDVV*
B570J29624_1122552	3300002363	Freshwater	MMKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSL
B570J29032_1094719363	3300002408	Freshwater	KMKSIQLSSIRKKIGAESYSVVRDTILKSSYDRPSKGMTLQRDKVVNSITDPIVKKSLENLTSKVDWFVIDVV*
B570J40625_1000212774	3300002835	Freshwater	MKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWLVVDVV*
B570J40625_1002956331	3300002835	Freshwater	MKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVKKSLENLTANVDWFVIDVV*
Ga0065166_100779112	3300004112	Freshwater Lake	MKSIQLSSIRKKIGAESYSVVRDTILKSSYDRPSKGMTLQRDKVVNSITDPIVKKSLENLTSKVDWFVIDVV*
Ga0065166_102481142	3300004112	Freshwater Lake	MKSIQLSTIKKKIGAERFTIIREVILKSSIDRPSKGMTLQRDRIVNAIKDPETKKNLENLTSKVDWFVVDVV*
Ga0068876_101144691	3300005527	Freshwater Lake	MKSIQLSSIKKKIGAENFSVLRETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLETITANVDWFVVDVV*
Ga0068876_107833902	3300005527	Freshwater Lake	MKSIQLSSIKKKIGAENFSVLRDTIFKSSYDRPSKGMTLQRDKVVNAIKDPQVKKSLENITSKVDWLVVDVV*
Ga0049081_100197633	3300005581	Freshwater Lentic	MKSIQLSTIKKKIGAERFTIIREVIFKSSIDKPSKGMTLQRDRIVNAIKDPETKKNLENLTSKVDWFVVDVV*
Ga0049080_100892211	3300005582	Freshwater Lentic	KSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWLVVDVV*
Ga0078894_1000340818	3300005662	Freshwater Lake	MKSIQLSSIKKKIGAENFSVLRDTIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITSKVDWFVVDVV*
Ga0078894_101241534	3300005662	Freshwater Lake	MKSIQLSSIKKKIGADNFTVVRDTIFKYSFDRPSKGMTLQRDRVVNAITDPQVKKSLENLTTNVDWFVIDVV*
Ga0078894_101826941	3300005662	Freshwater Lake	MKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVKKSLENLTTNVDWFVIDVV*
Ga0078894_101975583	3300005662	Freshwater Lake	MKSIQLSSIKKKIGAENFSILKETIFKSSYDRPSKGMTLQRDKVVNAIKDPQVKKSLENITSKVDWLVVDVV*
Ga0078894_116280322	3300005662	Freshwater Lake	MKSIQLSTIKKKIGAERFTIIREVIFKSSIDRPSRGMTLQRDRIVNAIKDPETKKNLESLTSNVDWFVVDVV*
Ga0079957_11243171	3300005805	Lake	MKSIQLSSIKKKIGAENFSVLRETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITSKVDWFVIDVV*
Ga0070743_102443641	3300005941	Estuarine	MVNMKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVKKSLENL
Ga0102977_12130801	3300007171	Freshwater Lake	MKSIQLSSIKKKIGAENFSVLRDTIFKSSYDRPSKGITLQRDRIVNAIKDPQVKKSFENITSKVDLFVVDVV*
Ga0102853_100006927	3300007543	Estuarine	MVNMKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVKKSLENLTTNVDWFVIDVV*
Ga0102817_10028094	3300007555	Estuarine	MKSIQLSSIRKKIGAESYSVVRDTILKSSYDRPSKGMTLQRDKVINSITDPIVKKSLENLTSKVDWFVIDVV*
Ga0102817_10087183	3300007555	Estuarine	MKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVSSIKDPQIKKSLENLTSKVDWLVVDVV*
Ga0102828_11537071	3300007559	Estuarine	MKSIQLSSIKKKIGAENFSILKETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITSKVDWLVVDVV*
Ga0102917_11862452	3300007590	Estuarine	MKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVKKSLENITSKVDWFVVDVV*
Ga0102902_11097043	3300007644	Estuarine	KMKSIQLSSIRKKIGAESYSVVRDTILKSSYDRPSKGMTLQRDKVVNSITDPIMIKSLENLTSKGDWFVIDVV*
Ga0102859_11961651	3300007708	Estuarine	MKSIQLSSIKKKIGAENFSVLRETIFKSPLGNPIKGMTLHRDRVVNAVKDPQVKKSLENITAKID
Ga0105737_11828222	3300007862	Estuary Water	MKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWLV
Ga0105747_12643691	3300007974	Estuary Water	MKSIQLSSIKKKIGAENFSVLRDTIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKS
Ga0114340_100267618	3300008107	Freshwater, Plankton	MKSIQLSTIKKKIGAERFTIIRDVIFKSSIDRPSRGMTLQRDRIVNAIKDPETKKNLENLTAKVDWFVVDVV*
Ga0114340_12728332	3300008107	Freshwater, Plankton	MVNMKSIQLSSIKKKIGADNFTVVRDTIFKYSFDRPSKGMTLQRDRVVNAITDPQVKKSLENLT
Ga0114341_100415275	3300008108	Freshwater, Plankton	MVNMKSIQLSSIKKKIGADNFTVVRDTIFKYSFDRPSKGMTLQRDRVVNAITDPQVKKSLENLTTNVDWFVIDVV*
Ga0114343_10136105	3300008110	Freshwater, Plankton	MKSIQLSSIKKKIGAENFSVLRETIFKSSIDRPSRGMTLQRDRVVNAIKDPNVKKNVENVTSKVDWFVVDVV*
Ga0114346_11551843	3300008113	Freshwater, Plankton	MKSIQLSSIKKKIGAENFSVLRDTIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITSKVDWLVVDVV*
Ga0114346_11848074	3300008113	Freshwater, Plankton	MMKSIQLSSIKKKIGAENFSVLRETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLETITANVDWFVVDVV*
Ga0114346_12718231	3300008113	Freshwater, Plankton	MKSIQLSSIKKKIGAENFSVLRETIFKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWLVIDVV*
Ga0114350_10740032	3300008116	Freshwater, Plankton	MKSIQLSSIKKKIGAENFSVLRETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITAKVDWLVVDVV*
Ga0114840_10083763	3300008258	Freshwater, Plankton	MMKSIQLSSIKKKIGAENFSVLRETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITAKVDWLVVDVV*
Ga0114336_13337031	3300008261	Freshwater, Plankton	MKSIQLSSIKKKIGAENFSVLRETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLETITANVDWF
Ga0114364_11455341	3300008267	Freshwater, Plankton	SIQLSSIKKKIGAENFSILKETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITSKVDWLVVDVV*
Ga0114364_11474871	3300008267	Freshwater, Plankton	SIQLSSIKKKIGAENFSILKETIFKSSYDRPSKGMTLQRDKVVNAIKDPQVKKSLENITSKVDWLVVDVV*
Ga0102811_14227381	3300009024	Estuarine	IGAENFSILKETIFKSSYDRPSKGMTLQRDKVVNAIQDPQVKKSLENITSKVDWLVVDVV
Ga0102829_10430702	3300009026	Estuarine	MKSIQLSSIKKKIGAENFSVLRETIFKSPLGNPIKGMTLHRDRVVNAVKDPQVKKSLENITAKIDWLVIDVV*
Ga0114966_101995643	3300009161	Freshwater Lake	MVNMKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVKK
Ga0114969_100419485	3300009181	Freshwater Lake	MMKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPKIKKSLENLTSKVDWLVVDVV*
Ga0114971_100568272	3300009185	Freshwater Lake	MKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPKIKKSLENLTSKVDWLVVDVV*
Ga0114982_10097655	3300009419	Deep Subsurface	MVNMKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVKKSLENLTANVDWFVIDVV*
Ga0102883_11660432	3300010312	Estuarine	MVNMKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVNKSLENLTANVDWFVIDVV*
Ga0129336_104933811	3300010370	Freshwater To Marine Saline Gradient	MKSIQLSSIKKKIGAENFSVLRETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITSNVDWFVIDVV*
Ga0151620_12012591	3300011268	Freshwater	MKSIQLSSIKKKIGADNFTVIRDTIFKYSFDRPSKGMTLQRDRVVNSISDPQVKKSLENLTSKVDWFVIDVV*
Ga0157140_100081542	3300012348	Freshwater	MKSIQLSSIRKKIGAESYSVVRDTILKSSYDRPSKGMTLQRDKVVNSITDPIVKKNLENLTSKVDWFVIDVV*
Ga0164293_102671422	3300013004	Freshwater	MKSIQLSSIKKKIGAENFSILKETIFKSSYDSPSKGMTLQRDKVVNAIKDPQVKKSLENITSKVDWLVVDVV*
Ga0164295_100414214	3300013014	Freshwater	MKSIQLSTIKKKIGAERFTIIREVIFKSSIVKPSKGMTLQRDRIVNAIKDPETKKNLENLTSKVDWFVVDVV*
Ga0181607_105613572	3300017950	Salt Marsh	MKSIQLSSIKKKIGAENFSVLRETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITSNVDWFVIDVV
Ga0181600_103250332	3300018036	Salt Marsh	MKSIQLSSIKKKIGAENFSVLRETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITSKVDWFVIDVV
Ga0211732_13884123	3300020141	Freshwater	MKSIQLSSIRKKIGAESYSVVRDTILKSSYDRPSKGMTLQRDKVINSITDPIVKKSLENLTSKVDWFVIDVV
Ga0211732_14680021	3300020141	Freshwater	MKSIQLSSIKKKIGAENFSVLRETIFKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWLVIDVV
Ga0211736_100271304	3300020151	Freshwater	MKSIQLSTIKKKIGAERFTIIREVILKSSIDRPSKGMTLQRDRIVNAIKDPETKKNLENLTSKVDWFVVDVV
Ga0211736_103707642	3300020151	Freshwater	MVNMKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVKKSLENLTTNVDWFVIDVV
Ga0211736_108417043	3300020151	Freshwater	MKSIQLSSIKKKIGAENFSILRDTIFKSSYDRPSKGMTLQRDKIVNAIKDPQVKKSLENATSNVDWFVVDVV
Ga0211734_106941975	3300020159	Freshwater	MKSIQLSSIKKKIGAENFSILRDTIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITSNVDWFVVDVV
Ga0211734_108201661	3300020159	Freshwater	QDIPMKSIQLSSIKKKIGAENFSVLRETIFKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWLVIDVV
Ga0211733_104413113	3300020160	Freshwater	MKSIQLSSIKKKIGADNFTVIRDTISKYAFDKPSKGMTLQRDRVVNSISDPQVKKSLENLTTNVDWFVIDVV
Ga0211735_104166574	3300020162	Freshwater	MKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVKKSLENLTTNVDWFVIDVV
Ga0208234_10229932	3300020515	Freshwater	MKSIQLSSIKKKIGAENFSILKETIFKSSYDSPSKGMTLQRDKVVNAIKDPQVKKSLENLTTNVDWFVIDVV
Ga0208601_10574112	3300020532	Freshwater	MKSIQLSSIKKKIGAENFSILKETIFKSSYDRPSKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWLVVDVV
Ga0208723_10610631	3300020571	Freshwater	MKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVKKSLENLTANVDWFVIDVV
Ga0213922_10172262	3300021956	Freshwater	MKSIQLSTIKKKIGAERFTIIREVIFKSSIDRPSRGMTLQRDRIVNAIKDPETKKNLESLTSNVDWFVVDVV
Ga0222715_105558621	3300021960	Estuarine Water	MKSIQLSSIKKKIGADNFTVIRDTIFKYSFDRPSKGMTLQRDRVVNSISDPQVKKSLENLTSKVDWFVIDVV
Ga0222714_102428292	3300021961	Estuarine Water	MKSIQLSSIKKKIGADNFTVVRDTIFKYSFDRPSKGMTLQRDRVVNAITDPQVKKSLENLTTNVDWFVIDVV
Ga0222712_104823362	3300021963	Estuarine Water	MKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWLVIDVV
Ga0244775_101237272	3300024346	Estuarine	VKDKIFQQKNWQAKMKSIQLSSIRKKIGAESYSVVRDTILKSSYDRPSKGMTLQRDKVVNSITDPIVKKSLENLTSKVDWFVIDVV
Ga0244775_107185251	3300024346	Estuarine	MKSIQLSSIKKKIGAENFSILKETIFKSSYDRPSKGMTLQRDKVVNAIKDPQVKKSLENITSKVDWLVVDVV
Ga0255105_10525651	3300027143	Freshwater	MKSIQLSSIRKKIGAESYSVVRDTILKSSYDRPSKGMTLQRDKVVNSITDPIVKKSLENLTSKVDWFVIDVV
Ga0208675_10442321	3300027189	Estuarine	MKSIQLSSIRKKIGAESYSVVRDTILKSSYDRPSKGMTLQRDKVINSITDPIVKKSLENLTSKVDW
Ga0255134_10258022	3300027292	Freshwater	MKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDW
Ga0255140_10811692	3300027300	Freshwater	IRKKIGAESYSVVRDTILKSSYDRPSKGMTLQRDKVVNSITDPIVKKSLENLTSKVDWFVIDVV
Ga0208923_10275411	3300027320	Estuarine	MKSIQLSSIKKKIGAENFSVLRETIFKSPLGNPIKGMTLHRDRVVNAVKDPQVKKSLENITAKIDWLVIDVV
Ga0208923_11004622	3300027320	Estuarine	MKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLEN
Ga0255125_10364651	3300027534	Freshwater	KSIQLSSIRKKIGAESYSVVRDTILKSSYDRPSKGMTLQRDKVVNSITDPIVKKSLENLTSKVDWFVIDVV
Ga0255118_10423231	3300027593	Freshwater	IQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWLVVDVV
Ga0255117_10231914	3300027600	Freshwater	IGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWLVVDVV
Ga0255117_10967281	3300027600	Freshwater	IQLSSIRKKIGAESYSVVRDTILKSSYDRPSKGMTLQRDKVVNSITDPIVKKSLENLTSKVDWFVIDVV
Ga0208974_10693571	3300027608	Freshwater Lentic	MKSIQLSTIKKKIGAERFTIIREVIFKSSIDKPSKGMTLQRDRIVNAIKDPETKKNLENLTSKVDWFVVDVV
Ga0209597_10415732	3300027746	Freshwater Lake	MKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPKIKKSLENLTSKVDWLVVDVV
Ga0209668_110332342	3300027899	Freshwater Lake Sediment	MKSIQLSSIKKKIGAENFSILKETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITSK
Ga0247722_1000055825	3300028027	Deep Subsurface Sediment	MVNMKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVKKSLENLTANVDWFVIDVV
Ga0315899_102970505	3300031784	Freshwater	MKSIQLSSIKKKIGAENFSILKETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITSKVDWLVVDVV
Ga0315899_110953322	3300031784	Freshwater	MKSIQLSSIKKKIGAENFSVLRETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITAKVDWLVVDVV
Ga0315909_107460971	3300031857	Freshwater	MVNMKSIQLSSIKKKIGADNFTVVRDTIFKYSFDRPSKGMTLQRDRVVNAITDPQVKKSLENLTTNVDWFVIDVV
Ga0315905_112190071	3300032092	Freshwater	MKSIQLSSIRKKIGAESYSVVRDTILKSSYDRPSKGMTLQRDKVVNSITDPIVKKNLENLTSKVD
Ga0335019_0440413_2_208	3300034066	Freshwater	MKSIQLSSIKKKIGAENFSILKETIFKSSYDRPSKGMTLQRDKVVNAIKDPQVKKSLENITSKVDWLVV
Ga0334990_0698515_1_186	3300034068	Freshwater	MKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTS
Ga0335020_0523686_358_558	3300034082	Freshwater	MKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWL
Ga0335017_0344486_1_216	3300034167	Freshwater	MMKSIQLSSIKKKIGAENFSVLRETILKSSLDNPCKGMTLQRDRVVNSIKDPQIKKSLENLTSKVDWLVVDV
Ga0335007_0319022_2_205	3300034283	Freshwater	MMKSIQLSSIKKKIGAENFSVLRETIFKSSYDRPSKGMTLQRDRIVNAIKDPQVKKSLENITAKVDWL
Ga0335013_0409343_180_398	3300034284	Freshwater	MKSIQLSSIKKKIGAENFSILKETIFKSSYDSPSKGMTLQRDKVVNAIKDPQVKKSLENITSKVDWLVVDVV
Ga0335064_0072980_25_237	3300034357	Freshwater	MVNMKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVKKSLENLLQMLIGS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100477

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences