Metagenome / Metatranscriptome Family F100514

Basic Information
Family ID	F100514
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	40 residues
Representative Sequence	AMKVSLENEAALVLAEIDQVTESQVRRPRGPRPATAARGPQ
Number of Associated Samples	89
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	9.09 %
% of genes near scaffold ends (potentially truncated)	9.80 %
% of genes from short scaffolds (< 2000 bps)	9.80 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Unclassified (89.216 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.647 % of family members)
Environment Ontology (ENVO)	Unclassified (35.294 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.667 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.23% β-sheet: 0.00% Coil/Unstructured: 63.77%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13620	CarboxypepD_reg	23.53
PF00005	ABC_tran	8.82
PF03379	CcmB	1.96
PF03918	CcmH	1.96
PF02321	OEP	1.96

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	3.92
COG2386	ABC-type transport system involved in cytochrome c biogenesis, permease component	Posttranslational modification, protein turnover, chaperones [O]	1.96
COG3088	Cytochrome c-type biogenesis protein CcmH/NrfF	Posttranslational modification, protein turnover, chaperones [O]	1.96

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
All Organisms	root	All Organisms	10.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
cellular organisms	root	All Organisms → cellular organisms	10.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	9.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005995\|Ga0066790_10471914	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300011120\|Ga0150983_12617570	All Organisms → cellular organisms → Bacteria → Acidobacteria	1655	Open in IMG/M
3300011120\|Ga0150983_14133180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	787	Open in IMG/M
3300012211\|Ga0137377_10791688	All Organisms → cellular organisms → Bacteria → Acidobacteria	881	Open in IMG/M
3300012384\|Ga0134036_1195199	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300017961\|Ga0187778_10010331	All Organisms → cellular organisms → Bacteria	5829	Open in IMG/M
3300017975\|Ga0187782_10257305	All Organisms → cellular organisms → Bacteria → Acidobacteria	1313	Open in IMG/M
3300019890\|Ga0193728_1175479	All Organisms → cellular organisms → Bacteria → Acidobacteria	921	Open in IMG/M
3300028780\|Ga0302225_10327497	All Organisms → cellular organisms → Bacteria → Acidobacteria	724	Open in IMG/M
3300031028\|Ga0302180_10246615	All Organisms → cellular organisms → Bacteria → Acidobacteria	940	Open in IMG/M
3300031469\|Ga0170819_11885850	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.02%
Host-Associated	Host-Associated	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.22%
Aquatic	Environmental → Aquatic	9.80%
Plants	Host-Associated → Plants	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.29%
Freshwater	Environmental → Aquatic → Freshwater	6.86%
Peat	Environmental → Terrestrial → Peat	3.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.96%
Sediment	Environmental → Aquatic → Sediment	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.75%
Loam	Environmental → Terrestrial → Soil → Loam	16.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.49%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.94%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.94%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.96%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.96%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.98%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573005	Grass soil microbial communities from Rothamsted Park, UK - FG3 (Nitrogen)	Environmental	Open in IMG/M
3300001180	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012384	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022713	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024182	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10	Environmental	Open in IMG/M
3300026847	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 20 (SPAdes)	Environmental	Open in IMG/M
3300026849	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46 (SPAdes)	Environmental	Open in IMG/M
3300027045	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 40 (SPAdes)	Environmental	Open in IMG/M
3300027172	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028023	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M
3300033983	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FG3_09903210	2189573005	Grass Soil	VLENEAALALTEIEQVTESQVRRPRPARPATVERGAR
JGI12695J13573_10100771	3300001180	Forest Soil	AMKVSLENEAALVLAEIDQVTESQVRRPRGPRPATAARGPQ*
JGI25614J43888_100513852	3300002906	Grasslands Soil	YSEGDFNAMKTSLENEAALILAQIDQVTESQVRRARGPAATERGQR*
JGI25614J43888_101739541	3300002906	Grasslands Soil	YSEGDFNAMKTSLENEAALILAQIDQVTESQVRRARGPAAAERGQR*
Ga0062385_100619662	3300004080	Bog Forest Soil	DYESMKTVLENEAAMALTEIEQVTESQVRRPRPAHPAIVERGAR*
Ga0062389_1003573512	3300004092	Bog Forest Soil	AENDYEAMKTSLENEAAMVLAEIDQITESQVRRPRGIKPVVPAADRGPQ*
Ga0062389_1009262022	3300004092	Bog Forest Soil	AMKVSLENEAALILAEIDQVTEAQTRRPRGTRPAPAAGGHS*
Ga0066683_105350201	3300005172	Soil	EAMKNAMETEAAMVLAEIDQVTEAGVRRPRGPRAAAERGPR*
Ga0066388_1032996102	3300005332	Tropical Forest Soil	MKASLENEAALVLTEIEQVTESQIRRARGVRGATPERSAR*
Ga0066388_1048177901	3300005332	Tropical Forest Soil	QAMKVSLENEAAQVVAEIDQVTEAHVRRPRGARSSEAERSQT*
Ga0070733_110254341	3300005541	Surface Soil	AENDYEAMKTTLENDAALALAEIDQITESQVRRPRAVKPATSDRGAQ*
Ga0070761_105467912	3300005591	Soil	YEAMKTTLEHEAALVLAEIDQVTESEVRRPRGIKPAPSDRGAQ*
Ga0070762_101592141	3300005602	Soil	MKTGLENDAAMVLAQIYQVTESQVRRPRGPRAADAERGAR*
Ga0070766_107951512	3300005921	Soil	DYQAMKLSLENEAALVLTEIDQVTESEVRRPRGIKPTAPDRGAQ*
Ga0066790_104719142	3300005995	Soil	KISIENEAALILAEIDQVTEAQTRRPRGPRPTSAAGSNS*
Ga0075029_1006139431	3300006052	Watersheds	GLENEAALALAEIDQVTEAQVRRPRAGRSASVDRSGQ*
Ga0073928_103525872	3300006893	Iron-Sulfur Acid Spring	DFEAMKVSLENEAALVLAEIDQVTESQVRRPRGPRPAAAARGPQ*
Ga0073928_108038961	3300006893	Iron-Sulfur Acid Spring	EAMKAGLENDAAMVLAEIDQVTEAQVRRPRGVRPPDAERGAR*
Ga0099829_101132651	3300009038	Vadose Zone Soil	LENEAALVVAEIDQVTEANVRRPRGARTAEPERGRQ*
Ga0099827_116401521	3300009090	Vadose Zone Soil	NEAALVLAEIEQVTESQVRRPRGGRPASAADRSAQ*
Ga0074046_100749493	3300010339	Bog Forest Soil	EAMKTALENEAALVLAEIERVTESQVRRPRAASPVASDRSAR*
Ga0126370_104184502	3300010358	Tropical Forest Soil	TSLENEAALVVTEIERLTDSQVRRPRGPRSTELDGSPR*
Ga0126376_114829452	3300010359	Tropical Forest Soil	LMKNSLENEAALVLTEIEQATDFDVRRPRAVRPAAAERSAR*
Ga0126372_117761021	3300010360	Tropical Forest Soil	NELAAVLAEVDQVTDAQTKRPRGARPAEAERSAR*
Ga0126378_114121552	3300010361	Tropical Forest Soil	EAMKTALENEAALVLAEIDRVTESQVRRPRGARPADRSAP*
Ga0126345_12639272	3300010858	Boreal Forest Soil	LENEAALVLAEIDQITESQVRRPRGTKPATSERGAE*
Ga0150983_101338991	3300011120	Forest Soil	NDAAVVLAEIDQITESQVRRPRGTKPATSERGAQ*
Ga0150983_109687793	3300011120	Forest Soil	SLENEAALVLTEIDQVTESQVRRARGVRPVETERGPR*
Ga0150983_126175703	3300011120	Forest Soil	LEHEAALVLTEIDQVTESEVRRPRGIKPAPSDRGAQ*
Ga0150983_141331801	3300011120	Forest Soil	KNALENEAALMLAEIDRVTESQTRRPRGIRPASADREAQ*
Ga0137389_116627821	3300012096	Vadose Zone Soil	LENEAALVLAEIEQVTESQVRRPRSGRPASAADRSAQ*
Ga0137365_111741581	3300012201	Vadose Zone Soil	GDFEAMKTALENEAALVLAEIEQVTESQVRRPRGGRPASAADRSAQ*
Ga0137362_110206292	3300012205	Vadose Zone Soil	ENEAALVLAEIDQVTESQVRRARGVRPVETERGQR*
Ga0137362_111773362	3300012205	Vadose Zone Soil	TSLENEAALVLTEIEQVTESQVRRARGTRPVETERGQR*
Ga0137377_107916881	3300012211	Vadose Zone Soil	AMKNSLETEAAMALAEIDQVTDAGVKRPRGPRASAERGAQ*
Ga0134036_11951992	3300012384	Grasslands Soil	KTALENEAALVLSEIDQVTEAQVRRPRGVHPADRSAQ*
Ga0137394_100768461	3300012922	Vadose Zone Soil	TALENEAALVLAEIDQVTESQVKRPRGARPSTADRSTP*
Ga0137416_103761932	3300012927	Vadose Zone Soil	FEAMKTALENEAALVLAEIDQVTEANIRRPRGARAAEAERGRR*
Ga0137407_106773431	3300012930	Vadose Zone Soil	FEAMKTALENEAALVLTEIDQVTESQVKRSRGPRPVSTDRSVQG*
Ga0182041_121308162	3300016294	Soil	YELMKASLENEAALVLTEIEQVTESQIRRPRGVRGAIPERSAR
Ga0182032_103894141	3300016357	Soil	ENEAALVLTEIEQVTDFDIRRPRAVRPAAAERSGQ
Ga0182037_106564701	3300016404	Soil	YSEGDYELMKNSLEEEAAVVLTEIEQVTESEVRRPRPVRPPDRSTR
Ga0182039_119842391	3300016422	Soil	ELMKNSLEEEAAVVLTEIEQVTESEVRRPRPVRPPDRSTR
Ga0182038_100898203	3300016445	Soil	TALENEAALVLTQVDEVTEAQVRRPRGVRPAASERGAR
Ga0134112_105070561	3300017656	Grasslands Soil	TALENEAALVLAEIEQVTESQVRRPRGGRPASAADRSAQ
Ga0187778_100103317	3300017961	Tropical Peatland	KASLENEAAMVLTEIEQVTESQVRRPRPASPATNERSAR
Ga0187777_106113012	3300017974	Tropical Peatland	LEEEAALVLTEIEQVTESQIRRPRVVRSSTPERSAR
Ga0187782_102573052	3300017975	Tropical Peatland	MKLALEQEAALVLAEIDQVTEAQVRRPRGVHPADRSAQ
Ga0187804_100360571	3300018006	Freshwater Sediment	KNSLEDEAALVLTEIEQVTESQIRRPRAVRSSTPERSAR
Ga0187804_102121821	3300018006	Freshwater Sediment	MKNSLENEAALVLTEIDQVTESQVRRPRPAARPAGTERSAR
Ga0187810_101687821	3300018012	Freshwater Sediment	EGDYELMKTSLENEAALVLTQIDEVTEAQVRRPRAVRPASTERSAR
Ga0187770_107629501	3300018090	Tropical Peatland	SEGDYETMKSTLENEAALVLAEIEQVTESQIRRPRPARPAAADRSAR
Ga0193728_11754792	3300019890	Soil	AMETEAALVLAEIDQVTDAGVKRPRGPRTAPERGPR
Ga0210407_105114651	3300020579	Soil	DYEAMKTSIESEAAMILAEIDQVTESQVRRPRPARAADAERGAR
Ga0210403_106739612	3300020580	Soil	TMKSALEVDAAMVLAEIDQVTDSQVRRPRGTRPAQTERGSQ
Ga0210395_110858071	3300020582	Soil	ISLENEAAQVLAEIDQVTESQVRRPRGIKPVASDRGAQ
Ga0210401_104422892	3300020583	Soil	MKVALENEAAMVLAEIDQVTEANVRRPRGARPAEAERGRQ
Ga0210401_105029042	3300020583	Soil	MKTSLEDEAALILTEIDQVTESQVRRPRAIKRVASDRGAQ
Ga0210404_101936962	3300021088	Soil	NAMKTSLENEAALVLTEIDQVTESQVRRARGVRPVETERGQR
Ga0210396_105343091	3300021180	Soil	ENDAAMVLAEIDQVTESQVRRPRGSRAVDAERGAR
Ga0210393_116347722	3300021401	Soil	EGDYELMKTSLENEAAVVLTEIEQVTESHVRRPRPVRLSDRSVR
Ga0210387_112498751	3300021405	Soil	SLENEAALVLTEIDQVTESEVRRPRGIKPTAPDRGAQ
Ga0210394_114280312	3300021420	Soil	FEAMKISLENEAALVLAEIDQVTDSQVRRPRAIKPVASDRGAQ
Ga0210402_111815461	3300021478	Soil	LENDAAVVLAEIDQITESQVRRPRGTKPATSERGAQ
Ga0210410_104420762	3300021479	Soil	SESDYDAMKTSIENEAALVLAEIEKVTESQVRRPRAARPAETERGQ
Ga0126371_113575683	3300021560	Tropical Forest Soil	YELMKASLENEAALVLTEIEQVTESQIRRPRGVRGAAPERSAR
Ga0126371_130362543	3300021560	Tropical Forest Soil	SLENEAALVLTEIEQVTESQIRRPRGVRGATPERSAR
Ga0242660_10815311	3300022531	Soil	TALENEAAMVLAEIDQVTESQVRRPRGARPLKTESGQR
Ga0242677_10482791	3300022713	Soil	ENDYEAMKTSLENDAAVVLAEIDQITESQVRRPRGTKPAASERGAQ
Ga0242673_11273161	3300022716	Soil	AMKISLENDAALVLAEIDQITESQVRRPRGTKPATSERGAQ
Ga0247669_10078413	3300024182	Soil	NAMRSSLEDEAAVVLAQVEQVTESQVRRPRTSRAAEPEHGHR
Ga0207802_10218052	3300026847	Tropical Forest Soil	LENEAALVLTEIEQVTDFDIRRPRAVRPAAAERSGQ
Ga0207804_1162861	3300026849	Tropical Forest Soil	SEGDYELMKTGLENEAALVLTEIEQVTDFDIRRPRAVRPATAERSGQ
Ga0207726_10426881	3300027045	Tropical Forest Soil	YEGMKTSLENEAAVLLTEIEQVTESQVRRPRPTRPAGAEKGAR
Ga0208098_10139122	3300027172	Forest Soil	ENEAALVLAEIDQVTDSQVRRPRAIKPVASDRGAQ
Ga0209076_10460132	3300027643	Vadose Zone Soil	GDYNAMRTSLENEAALVLAQIEQVTESQVRRPRAPRPAEPERGQ
Ga0209117_11650872	3300027645	Forest Soil	AIGSEAAMILAEIDQVTESQVRRPRPARPADAERGAR
Ga0209388_11731941	3300027655	Vadose Zone Soil	TALENEAALVLAEIDQVTQSQVKRPRGARPASADRSTP
Ga0208990_10667442	3300027663	Forest Soil	FEAMKVSLETEAALLLAEIDQVTESQVRRPRGPRPATAARGPQ
Ga0209446_11058381	3300027698	Bog Forest Soil	ENEAAMALTEIEQVTESQVRRPRPAHPAIVERGAR
Ga0209590_100332671	3300027882	Vadose Zone Soil	YEAMKISLENEAALVVAEIDQVTEANVRRPRGARAAEAERGRQ
Ga0265357_10181841	3300028023	Rhizosphere	DFEAMKLSLENEAAQVLAEIDQVTESQVRRPRGIKPAASDRGAL
Ga0137415_105414531	3300028536	Vadose Zone Soil	EAMKVALENEAALVLAEIDQVTEANIRRPRGARAAEAERGRR
Ga0302225_103274972	3300028780	Palsa	KTAMETEAALALAEIDQVTESQARRPRGPRPATAGGGKS
Ga0308309_119118182	3300028906	Soil	DYEAMKTSLENDAALVLAEIDQITESQVRRPRGIKPAASERGAQ
Ga0302180_102466152	3300031028	Palsa	ADYEAMKTAMETEAALALAEIDQVTESQARRPRGPRPATAGGGKS
Ga0170820_106122832	3300031446	Forest Soil	AMKNAMETEAALVLAEIDQVTEAGVKRPRGPRTAADRGAR
Ga0170819_118858502	3300031469	Forest Soil	KTGLENDAAMVLAEIDRVTEAQVRRPRGARTADAERGA
Ga0318534_105415412	3300031544	Soil	ENEAALVLAEIEQTTESQIRRPRPSRPAPVERGAR
Ga0307474_108281452	3300031718	Hardwood Forest Soil	MKNSLESEAALVLTEIEQVTESQIRRPRPTSRPAAADRSAR
Ga0307469_105903902	3300031720	Hardwood Forest Soil	TALENEAAMVLAEIDQVTEAQVKRPRGTRPASADRSGQ
Ga0307469_114887602	3300031720	Hardwood Forest Soil	MKTSLENEAALVLAEIDQITESQVRRPRGVKPVAPERGAR
Ga0306918_104701811	3300031744	Soil	TMKNTLENEAALVLAEIEQTTESQIRRPRPSRPAPVERGAR
Ga0307478_115993312	3300031823	Hardwood Forest Soil	GDYNAMKVSLENEAALVLAQIEQATESQVRRARGARPIETERGGQ
Ga0306919_107596112	3300031879	Soil	MKTALENEAALVLTQVDEVTEAQVRRPRGVRPATSERGAR
Ga0306921_119813972	3300031912	Soil	SSMEMEAAVVLAEIDQITDSVTKRPRGPKPAASRGAS
Ga0310910_113613542	3300031946	Soil	KYSEGDYELMKNSLEEEAAVVLTEIEQVTESQIRRPRAVRSSTPERSTR
Ga0306924_103529341	3300032076	Soil	GDYELMKAGLENEAALVLTEIEQATDFDVRRPRTVRPQAAERSGQ
Ga0307470_100864073	3300032174	Hardwood Forest Soil	DAMRISLENEAALVLAEIEKVTESQVRRPRAPRPAETERGQ
Ga0307470_113530781	3300032174	Hardwood Forest Soil	TSLENEAALVLTEIDQVTESQVRRARGVRPVETERGQR
Ga0371489_0387470_50_175	3300033755	Peat Soil	MMKNSLEEEAAIVLTEIEQVTESQIRRPRVVRSSTPERSAR
Ga0371488_0061444_1275_1397	3300033983	Peat Soil	MKTSLENEAALVLTEIEQVTESQVRRPHAVRPAATERSAR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100514

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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