Basic Information | |
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Family ID | F100807 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 102 |
Average Sequence Length | 41 residues |
Representative Sequence | RDKLRYEVVVNFVDKDRIRGYLSAPKDKVLSAERPQFRPE |
Number of Associated Samples | 86 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 3.96 % |
% of genes near scaffold ends (potentially truncated) | 93.14 % |
% of genes from short scaffolds (< 2000 bps) | 85.29 % |
Associated GOLD sequencing projects | 84 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.19 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (96.078 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (19.608 % of family members) |
Environment Ontology (ENVO) | Unclassified (42.157 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (63.725 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 22.06% Coil/Unstructured: 77.94% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.19 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Surface Soil Soil Grasslands Soil Grass Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Bio-Ooze Arabidopsis Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
N57_05106800 | 2170459013 | Grass Soil | FLVGRDRLRYEFVVNYVDKDRIRGYLSTPKDKVLAAEAGRRF |
F14TC_1018205591 | 3300000559 | Soil | EFVVYSVDKDRVRGYISTPKDKLVAAENPLQRRLQ* |
JGI1027J12803_1093380041 | 3300000955 | Soil | PVTFLVGKDRLRYEFVVNSVDKDRIRGYVSTPKDKVLAVEGPSTVQHPD* |
Ga0066674_101346102 | 3300005166 | Soil | MFLVGPDRLRYELVVNYVDKDRIRAYLSTPKAPKDKTLAAEGPSFRRLQ* |
Ga0066683_101071063 | 3300005172 | Soil | PVQFMVGHDQLRYEMVINAVNKDRIQGYLSTPKDKVLSAERTTQVKR* |
Ga0066676_105427961 | 3300005186 | Soil | EQLRYEVVVNSVEKDRIRGYVSAPKDKVLSAEVPRFRLQ* |
Ga0065715_108748351 | 3300005293 | Miscanthus Rhizosphere | LVGREKLRYEIVVNVVDKDRIRGYLSAPKDKVLSAERPAFK* |
Ga0066388_1044997862 | 3300005332 | Tropical Forest Soil | LVGKDRLRYELVVYSVDKDRIRGYLSTPKDKTLSAEGPSFRH* |
Ga0066388_1077770002 | 3300005332 | Tropical Forest Soil | ANEPVTFLVGHDRVRYEFVVFSVDKDRIRGYISTPKDKLVAAENPLQRRLQ* |
Ga0066388_1077849961 | 3300005332 | Tropical Forest Soil | HDRVRYEFVVFTVDKDRIHGYISTPKDKLVAAESPLQRRLQ* |
Ga0070675_1021144611 | 3300005354 | Miscanthus Rhizosphere | LVGQSHVRYELVVNAVEKDRIRGYVSTPKDVVLSAEGPNARQ* |
Ga0070709_107852013 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | FLVGREQLRYEVVVNSVEKDRIRGYMSAPKDKSLSAEIPQFRQQ* |
Ga0066686_110070101 | 3300005446 | Soil | LVGRDKLRYEIVVNYVDKDRIRGYLSAPKDKVLAAERPAFRPE* |
Ga0066689_101297031 | 3300005447 | Soil | GHDQLRYEMVINAVNKDRIQGYLSTPKDKVLSAEGPTQLKR* |
Ga0070678_1007618931 | 3300005456 | Miscanthus Rhizosphere | LLIGQNHVRYELVVNSVEKDRIRGYISAPKDVVLSAEGPTSR* |
Ga0070741_112122652 | 3300005529 | Surface Soil | VGRDQLRYEVVVNSVEKDRIRGYVSAPKDKTLAAEIPRFRE* |
Ga0066692_101388213 | 3300005555 | Soil | VGHDQLRYEMVINAVNKDRIQGYLSTPKDKVLSAERTTQVKR* |
Ga0066692_109075741 | 3300005555 | Soil | YEFVVNYVDKDRIRGYLSTPKDKTLAAEGPSRQRF* |
Ga0066703_101968193 | 3300005568 | Soil | FVVNYVDKDRIRGYLSTPKDKTLSAEGPNFRRLQ* |
Ga0066706_104765662 | 3300005598 | Soil | MFLVGPDRLRYELVVNYVDKDRIRGYLSTPKAPKDKTLAAEGPSFRRLQ* |
Ga0066903_1015045182 | 3300005764 | Tropical Forest Soil | YEFVVNSVDKDRIRGYLSTPKDRLTVAETPASLRVR* |
Ga0068858_1024335151 | 3300005842 | Switchgrass Rhizosphere | QFLVGRDKLRYEIVVNIVDKDRIRGYLSAPKDKSLAAERPAAR* |
Ga0066651_101743312 | 3300006031 | Soil | NYVDKDRIRGYLSTPKAPKDKTLAAEGPSFRRLQ* |
Ga0066651_101856471 | 3300006031 | Soil | ELVVNFVDKDRVRGYLSTPKDKTFSAEGPSTRRLQ* |
Ga0066665_101026043 | 3300006796 | Soil | QLRYEVVVNSVEKDRIRGYVSAPKDKVLSAEVPRFRLQ* |
Ga0075428_1005180311 | 3300006844 | Populus Rhizosphere | VRYEFVVYSVDKDRIRGYISTPKDKLVAAENPVQRRLQ* |
Ga0075421_1003955933 | 3300006845 | Populus Rhizosphere | RYEFVVYSVDKDRIRGYISTPKDKLVAAENPLQRRLQ* |
Ga0075421_1027328431 | 3300006845 | Populus Rhizosphere | EPVTFLVGRDRLRYEIVVNYVDKDRIRGYMSTPKDKMLSAEGPTLRRER* |
Ga0075425_1010508691 | 3300006854 | Populus Rhizosphere | FLVGRDRARYEFVVNFVDKDRIRGYISTPKDKLVASETPTLRVR* |
Ga0075429_1005381973 | 3300006880 | Populus Rhizosphere | LRYEVVVNSVEKDRIRGYVSAPKDKVLSAEGPKFRAQ* |
Ga0075429_1014981992 | 3300006880 | Populus Rhizosphere | EFVVYSVDKDRIRGYISTPKDKLVAAENPLQRRLQ* |
Ga0075435_1014001092 | 3300007076 | Populus Rhizosphere | ELVVNYVDKDRIRGYLSTPKDKVLSAEAPALRRAQ* |
Ga0066710_1002521833 | 3300009012 | Grasslands Soil | YEFVVNYVDKDRIRGYMSTPKDRLVAAETPTLRVQ |
Ga0066710_1002746561 | 3300009012 | Grasslands Soil | LRYEVVVNAVDKDRIRGYVSTPKDKVLAAEAPQFRLQ |
Ga0066710_1048227841 | 3300009012 | Grasslands Soil | EPVQFMVGHDQLRYEMVINAVNKDRIQGYLSTPKDKVLSAEGPTQLKR |
Ga0114129_122344041 | 3300009147 | Populus Rhizosphere | VGRDRLRYEIVVNYVDKDRIRGYMSTPKDKLLSAEGPTLRRER* |
Ga0114129_124899222 | 3300009147 | Populus Rhizosphere | QFLVGRDELRYEVVVNSVEKDRIRGYVSAPKDKVLSAEGPKFRAQ* |
Ga0126373_113025081 | 3300010048 | Tropical Forest Soil | GSDHLRYEFVVNSVDRDHIKGYLSTPKDKILSAEAPRAKLQ* |
Ga0127445_10917132 | 3300010085 | Grasslands Soil | LRYELVVNSVDKDRIRGYLSVPKDKVLASEVPVLRQ* |
Ga0127463_10662751 | 3300010098 | Grasslands Soil | GHDQLRYEMVINAVNKDRIQGYLSTPKDKVLSAEGPTKQTKR* |
Ga0127453_10364591 | 3300010102 | Grasslands Soil | RDQLRYELVVNSVDKDRIRGYLSVPKDKVLASEVPILRQ* |
Ga0127458_10452942 | 3300010112 | Grasslands Soil | VGHDQLRYEMVINAVNKDRIQGYLSTPKDKVLSAEGPTKQTKR* |
Ga0127482_10846282 | 3300010126 | Grasslands Soil | LVGHDQLRYEMVINAVNKDRIQGYLSTPKDKVLSAEGPTKQTKR* |
Ga0127455_10211581 | 3300010132 | Grasslands Soil | DQLRYELVVNSVDKDRIRGYLSVPKDKVLASEVPVLRQ* |
Ga0134088_100240501 | 3300010304 | Grasslands Soil | EPVQFMVGHDQLRYEMVINAVNKDRIQGYLSTPKDKVLSAEGPTKQTKR* |
Ga0134111_101714751 | 3300010329 | Grasslands Soil | YEFVVNYIDKDRIRGYVSTPKDKVLSAEGPSFRRPQ* |
Ga0134111_105228902 | 3300010329 | Grasslands Soil | YEMVINAVNKDRIQGYLSTPKDKVLSAERTSQLKR* |
Ga0134071_102954551 | 3300010336 | Grasslands Soil | KLRYEIVVNFVDKDRVRGYLSAPKDKALAAERPQFRP* |
Ga0126379_113221681 | 3300010366 | Tropical Forest Soil | QNRVRYELVVNAVEKDRIRGYISTPKDAALNSEGPAAR* |
Ga0126379_136315801 | 3300010366 | Tropical Forest Soil | DRLRYEIVVNYVDKDRIRGYMSTPKDKVLSAEAPRR* |
Ga0126379_136563341 | 3300010366 | Tropical Forest Soil | EFVVNSVDKDRIRGYLSTPKDRLTVAETPASLRVR* |
Ga0134124_116876721 | 3300010397 | Terrestrial Soil | KLRYELVVNFVDKDRIRGYLSAPKDKVLAAERPQFRPD* |
Ga0126383_110642893 | 3300010398 | Tropical Forest Soil | DKLRYEVVVNYVDKDRVRGYLSAPKDKALAAERPQIRPE* |
Ga0134127_109136751 | 3300010399 | Terrestrial Soil | EVVVNFVDKDRIRGYLSTPKDKALSAERPQFRPE* |
Ga0134121_105902501 | 3300010401 | Terrestrial Soil | RDKLRYEVVVNFVDKDRIRGYLSAPKDKVLSAERPQFRPE* |
Ga0137422_10528724 | 3300011416 | Soil | GRDRLRYEFVVNYVDKDRIRGYLSTPKDKVLAAEAPPVRRLQ* |
Ga0137431_10147253 | 3300012038 | Soil | VGRDELRYEIVVNAVDKDRIRGYVSAPKDKVLSAEAPRLRTQ* |
Ga0137327_10468293 | 3300012173 | Soil | RDKLRYEVVVNFVDKDRVRGYVSAPKDKVLSAERPQFRPE* |
Ga0137380_101174311 | 3300012206 | Vadose Zone Soil | QFLVGRDKLRYEIVVNYVDKDRIRGYLSTPKDKVLAAERPTFRPE* |
Ga0137381_117221792 | 3300012207 | Vadose Zone Soil | QFLVGRDQLRYEVVVNSVEKDHIRGYVSAPKDKVLSAEVPRFRLQ* |
Ga0137387_100408205 | 3300012349 | Vadose Zone Soil | EPVQFMVGHDQLRYEMVINAVNKDRIQGYLSTPKDKVLSAEGPTQLKR* |
Ga0134042_11835491 | 3300012373 | Grasslands Soil | DQLRYELVVNSVDKDRIRGYVSVPKDKVLASEVPILRQ* |
Ga0134044_10889052 | 3300012395 | Grasslands Soil | DQLRYELVVNSVDKDRIRGYLSVPKDKILASEVPILRQ* |
Ga0134059_11179251 | 3300012402 | Grasslands Soil | DQLRYELVVNSVDKDRIRGYLSVPKDKVLASEVPILRQ* |
Ga0134060_12860311 | 3300012410 | Grasslands Soil | QFMVGHDQLRYEMVINAVNKDRIQGYLSTPKDKVLSAEGPTQLKR* |
Ga0157310_100067513 | 3300012916 | Soil | GREKLRYEIVVNVVDKDRIRGYLSSPKDKALSAERPAFK* |
Ga0126375_102908092 | 3300012948 | Tropical Forest Soil | FLVGKDELRYEIVVNSVDKDRIRGYVSAPKDKVLSAESPKFRTPSQ* |
Ga0126375_113743902 | 3300012948 | Tropical Forest Soil | EVVVNYVDKDRIRGYLSAPKDKVLAAERPQFRPE* |
Ga0157374_100826521 | 3300013296 | Miscanthus Rhizosphere | VNQPIAFLVGREKLRYEIVVNVVDKDRIRGYLSAPKDKVLSAERPAFK* |
Ga0163162_123482142 | 3300013306 | Switchgrass Rhizosphere | HLRYELVVNSVEKDRIRGYVSAPKDSSLNSEGPTVN* |
Ga0134081_103015711 | 3300014150 | Grasslands Soil | QFLVGRDQLRYEVVVNSVDKDRIRGYLSAPKDKVMSAEIPRFRLQ* |
Ga0163163_106154283 | 3300014325 | Switchgrass Rhizosphere | TANEPVTFLVGRDRVRYEFVVNYVEKNRIRGYLSAPKDKLTAAETPSLRVR* |
Ga0157380_114822762 | 3300014326 | Switchgrass Rhizosphere | LVGRDKLRYEVVVNFVDKDRVRGYLSAPKDKVLSAERPQFRPE* |
Ga0132258_110459065 | 3300015371 | Arabidopsis Rhizosphere | TFLVGRDRVRYELVVNYVDKDRVRGYLSTPKDKLIAGDTPTLRRLQ* |
Ga0132258_137440901 | 3300015371 | Arabidopsis Rhizosphere | TFLVGRDRLRYEIVVNYVDKDRIRGYMSTPKDKVLSAEAPRR* |
Ga0182038_113493281 | 3300016445 | Soil | EPVTFMVGSDKLRYEFVVNYVDRDRIRGYMSTPKDKVLAAETPVRQRLQ |
Ga0134069_11588951 | 3300017654 | Grasslands Soil | GRDRLRYEFVVNYVDKDRIRGYVSTPKDKILSAEGPSFRRSQ |
Ga0134112_100404052 | 3300017656 | Grasslands Soil | RDQLRYELVVNSVDKDRIRGYLSVPKDKVLASEVPILRQ |
Ga0066655_109090583 | 3300018431 | Grasslands Soil | FVVNFVDKDRIRGYMSTPKDKVLAAEGPSTVQHPD |
Ga0066667_102463803 | 3300018433 | Grasslands Soil | RYEFVVNYVDKDRIRGYLSTPKDKTLSAEGPNFRRLQ |
Ga0066669_113326432 | 3300018482 | Grasslands Soil | DKLRYEIVVNFVDKDRVRGYLSAPKDKALAAERPQFRP |
Ga0173482_105678161 | 3300019361 | Soil | RDELRYEVVVNSVDKDRIRGYISTPKDKVLSAEAPRLKGQ |
Ga0187892_103474041 | 3300019458 | Bio-Ooze | DKLRYEVVVNFVDKDRVRGYVSAPKDKVLSAERPAFRPQ |
Ga0179594_102656331 | 3300020170 | Vadose Zone Soil | FLVGRDKLRYEIVVNYVDKDRIRGYLSAPKDKVLAAERPAFRPE |
Ga0210387_118576881 | 3300021405 | Soil | DRVLYEFVVNSVDKDRIRGYLSTPKDKVLAAETPASAQRLQ |
Ga0207700_110049251 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MVGSDRVRYEFVVNSVDKDRIRGYLSTPKDKVLAAEKAPAAQRLQ |
Ga0207701_102153241 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | GRDRLRYELVVNYVDKDRIRGYMSTPKDKMLSAEGPTLRRER |
Ga0207711_105505521 | 3300025941 | Switchgrass Rhizosphere | QPIAFLVGREKLRYEIVVNVVDKDRIRGYLSAPKDKALSAERPAFK |
Ga0207648_119379311 | 3300026089 | Miscanthus Rhizosphere | PLLVGKNHLRYELVVNSVEKDRIRGYVSAPKDSSLNSEGPTVN |
Ga0207698_110911061 | 3300026142 | Corn Rhizosphere | TVNQPIAFLVGREKLRYEIVVNVVDKDRIRGYLSAPKDKVLSAERPAFK |
Ga0209375_10444563 | 3300026329 | Soil | MFLVGPDRLRYELVVNYVDKDRIRAYLSTPKAPKDKTLAAEGPSFRRLQ |
Ga0209159_12121202 | 3300026343 | Soil | DQLRYELVVNSVDKDRIRGYLSVPKDKILASEVPILRQ |
Ga0209378_11768341 | 3300026528 | Soil | RYELVVNSVDKDRIRGYVSVPKDKVLASEVPILRQ |
Ga0209378_12885571 | 3300026528 | Soil | FLVGRDRLRYEFVVNYIDKDRIRGYVSTPKDKVLSAEGPSFRRPQ |
Ga0209058_10602521 | 3300026536 | Soil | GRDQLRYELVVNSVDKDRIRGYLSVPKDKVLASEVPILRQ |
Ga0209376_13797992 | 3300026540 | Soil | RYEMVINAVNKDRIQGYLSTPKDKVLSAERTTQVKR |
Ga0209161_105572602 | 3300026548 | Soil | MFLVGPDRLRYELVVNYVDKDRIRGYLSTPKAPKDKTLAAEGPSFRRLQ |
Ga0209799_10506392 | 3300027654 | Tropical Forest Soil | LRYEVVVNFVDKDRIRGYLSAPKDKALAAERPQFRPE |
Ga0209814_100395271 | 3300027873 | Populus Rhizosphere | VVNFVDKDHVQGYLSTPKDKALAAERPQFRPESKP |
Ga0209382_117538061 | 3300027909 | Populus Rhizosphere | GRNELRYEVVVNSVEKDRIRGYVSAPKDKVLSAEGPKFRAQ |
Ga0315912_100220491 | 3300032157 | Soil | VPLLVGQNHVRYELVVNAVEKDRIRGYVSTPKDVVLSAEGPAPKQ |
Ga0315912_100908455 | 3300032157 | Soil | YELVVNYVDKNRIRGYVSTPGGKAIAAEERALRPQ |
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