Metagenome / Metatranscriptome Family F100830

Basic Information
Family ID	F100830
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	53 residues
Representative Sequence	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIQPMHDSEAGNPALTNK
Number of Associated Samples	79
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Most Common Taxonomy
Group	Unclassified (96.078 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (35.294 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.26% β-sheet: 0.00% Coil/Unstructured: 59.74%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01329	Pterin_4a	42.16
PF13491	FtsK_4TM	17.65
PF00398	RrnaAD	2.94
PF01370	Epimerase	1.96
PF16864	Dimerisation2	1.96
PF00664	ABC_membrane	0.98
PF00891	Methyltransf_2	0.98
PF02511	Thy1	0.98
PF04851	ResIII	0.98
PF14437	MafB19-deam	0.98
PF07715	Plug	0.98
PF13343	SBP_bac_6	0.98
PF13450	NAD_binding_8	0.98
PF06983	3-dmu-9_3-mt	0.98
PF04166	PdxA	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	42.16
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	2.94
COG1351	Thymidylate synthase ThyX, FAD-dependent family	Nucleotide transport and metabolism [F]	0.98
COG1995	4-hydroxy-L-threonine phosphate dehydrogenase PdxA	Coenzyme transport and metabolism [H]	0.98
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.98
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.98

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.08 %
All Organisms	root	All Organisms	3.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.08 %
cellular organisms	root	All Organisms → cellular organisms	3.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.08 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.08 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.08 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.08 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.08 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.08 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	2.94 %

Scaffold	Taxonomy	Length	IMG/M Link
3300009444\|Ga0114945_10000191	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	37892	Open in IMG/M
3300009777\|Ga0105164_10000036	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	94774	Open in IMG/M
3300025173\|Ga0209824_10000004	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	344525	Open in IMG/M
3300025910\|Ga0207684_10000363	All Organisms → cellular organisms → Bacteria	61249	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.02%
Host-Associated	Host-Associated	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.69%
Aquatic	Environmental → Aquatic	33.33%
Plants	Host-Associated → Plants	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.69%
Sediment	Environmental → Aquatic → Sediment	15.69%
Freshwater	Environmental → Aquatic → Freshwater	12.75%
Thermal Springs	Environmental → Aquatic → Thermal Springs	4.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	15.69%
Loam	Environmental → Terrestrial → Soil → Loam	9.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.84%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	4.90%
Lake	Environmental → Aquatic → Freshwater → Lake	2.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.94%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	26.47%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.49%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	15.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	2.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.94%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.67%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	15.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	9.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	7.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.86%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.90%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.94%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	1.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009777	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water	Environmental	Open in IMG/M
3300010118	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012379	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012403	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013092	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_150m	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021357	Freshwater microbial communities from subterranean cave lake in Wind Cave National Park, South Dakota, United States - WICALVC2017	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300025173	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water (SPAdes)	Environmental	Open in IMG/M
3300025174	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 3	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300030831	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_141 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25383J37093_101743692	3300002560	Grasslands Soil	AMFPERVLDMLDGLVAHFYACANCGRREEAENCVQPMHSSEVGGSVVSR*
JGI25384J37096_100202362	3300002561	Grasslands Soil	MRKCKKCQGAMFPERVLDMLDGLVAHFYACANCGRREEAENCVQPMHSSEVGGSVVSR*
JGI25382J37095_100153962	3300002562	Grasslands Soil	MRKCKKCQGAMFPERVLDMLDGLVAHFYACANCGRREEAENCVQPMHSSEXGGSVVSR*
JGI25386J43895_100015747	3300002912	Grasslands Soil	MTMRKCKKCQGAMFPERVLDMLDGLVAHFYACANCGRREEAENCVQPMHSSEVGGSVVSR
Ga0066674_101064322	3300005166	Soil	MRKCKKCGGMMFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAVDPALTNK*
Ga0066674_101299292	3300005166	Soil	MRKCKKCQGMMFPERVIDMLDGLIGHFYACANCGRREEAANCIEPMHTSETLSGR*
Ga0066672_107051091	3300005167	Soil	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAGSPALTNK*
Ga0066680_104848902	3300005174	Soil	MRKCKKCQGMMFPERVIDMLDGLIGHFYACANCGRREEAANCIEPMHTSETLSG
Ga0066690_101848832	3300005177	Soil	MRKCKKCQGAMFPERVLDMLDGLVAHFYACANCGRREEAENCVQPMHSSE
Ga0066690_103667582	3300005177	Soil	MMFPERVIDMLDGLIGHFYACANCGRREEAPRCIQPMHDSEAGQPAALTK*
Ga0066690_109928102	3300005177	Soil	RVLDMLDGLVAHFYACANCGRREEAENCVQPMHSSEVGGSVVSR*
Ga0066688_100566092	3300005178	Soil	MRETNMRKCKKCQGMMFPERVIDMLDGLIGHFYACANCGRREEAANCIEPMHTSETLSGR
Ga0066685_105685961	3300005180	Soil	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAVDPA
Ga0070700_1015825212	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MFPERVIDMLDGLIGHFHACANCGRREEAARCIEPMHNSDPSQPVLTNK*
Ga0070706_1010222502	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIQPMHDSEALTNK*
Ga0070707_1000553563	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRKCKKCQGSMFPERVLDMLDGLVAHFYACANCGRREEAEHCIQPMHVPEVSGVAHS*
Ga0070707_1007015642	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRKCKKCGGMMFPERVIDMLDGLIGHFYACANCGRREEAPRCIQPMHDSEALTNK*
Ga0070699_1010733322	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	PKTLEKTMRKCKKCGGMMFPERVIDMLDGLIGHFYACANCGRREEAPRCIQPMHDSEALTNK*
Ga0070697_1000056262	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MMFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAGYPALTNNHQ*
Ga0070704_1001305031	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRKCKKCGGMMFPERVIDMLDGLIGHFHACANCGRREEAARCIEPMHNSAPSQPVLTNK*
Ga0066699_111976131	3300005561	Soil	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAVDQALTNR*
Ga0070717_103246042	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAGYPALTNK*
Ga0066696_107741571	3300006032	Soil	MRKCKKCGGMMFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSDAGSPALTNK*
Ga0066658_103496582	3300006794	Soil	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIQPMHDSEAGQPAALTK*
Ga0066659_111512512	3300006797	Soil	MFPERVIDMLDGLIGHFYACANCGRLDEAPRCIQPMHDSEAAQPA
Ga0066660_107991752	3300006800	Soil	MRKCKKCQGMMFPERVIDMLDGLIGHFYACANCGRREEAANCIEPMHTSET
Ga0066710_1044999782	3300009012	Grasslands Soil	MRKCKKCQGMMFPERVIDMLDGLIGHFYACANCGRREEAANCIEPMHTSETLGGR
Ga0099829_101683382	3300009038	Vadose Zone Soil	MFPERVLDMLDGLVAHFYACANCGRREEAEHCIQPMHVPEVSGVAHS*
Ga0099830_101339363	3300009088	Vadose Zone Soil	MRKCKKCQGAMFPERVLDMLDGLVAHFYACANCGRREETENCVQPMHSSEVGGSVVSR*
Ga0099828_100754542	3300009089	Vadose Zone Soil	MFPERVLDMLDGLVAHFYACANCGRREEAEHCIQPMHVPEVSGVTHS*
Ga0066709_1003813483	3300009137	Grasslands Soil	MFPERVIDMLDGLIGHFYACGNCGRREEARRCIQPMHDSEGLTNK*
Ga0105242_103576192	3300009176	Miscanthus Rhizosphere	MRKCKKCGGMMFPERVIDMLDGLIGHFHACANCGRREEAARCIEPMHNSDPSQPVLTNK*
Ga0114945_1000019114	3300009444	Thermal Springs	MRKCKKCQGTMFPERVIDMLDGLIGNFYACANCGRREEAKLCVQPMHTAEVGGSPQV*
Ga0114945_1000026942	3300009444	Thermal Springs	MFPERVLDMLDGLVAHFYACANCGRREEAEHCIRPMHTAEVGGASRS*
Ga0114945_100063622	3300009444	Thermal Springs	MFPERVIDMLDGLIGHFYACANCGRREEAKQCVQPMHAAEVGEA*
Ga0105164_100000362	3300009777	Wastewater	MRKCKKCQGSMFPERVLDMLDGLVAHFYACINCGRREEAANCIQPMHVAEVGGAARS*
Ga0127465_10674791	3300010118	Grasslands Soil	QGMMFPERVIDMLDGLIGHFYACANCGRREEAAHCIEPMHTSETLSGR*
Ga0134086_103473741	3300010323	Grasslands Soil	QRLLTLEKTMRKCKKCGGMMFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAGSPALTNK*
Ga0134071_104197901	3300010336	Grasslands Soil	TLEMTMRKCKKCGGMMFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAGSPALTNK*
Ga0137365_107155691	3300012201	Vadose Zone Soil	MFPERVLDMLDGLVAHFYACANCGRREEAEHCIQPMHVPEVSGAVHS*
Ga0137379_113164342	3300012209	Vadose Zone Soil	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAG
Ga0137370_101090422	3300012285	Vadose Zone Soil	MFPERVIDMLDGLIGHFYACANCGRREEAPRCILPMHDSEAGSPALTNK*
Ga0137387_106197392	3300012349	Vadose Zone Soil	MRKCKKCQGSMFPERVLDMLDGLVANFYACANCGRREEAEHCIQPMHVPEVSGAVHS*
Ga0137366_102771091	3300012354	Vadose Zone Soil	RKCKKCGGIMFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAESPALTNK*
Ga0137366_109776061	3300012354	Vadose Zone Soil	MMFPERVIDMLDGLIGHFYACANCGRREEAARCIQPMHNSETSDTVLSNK*
Ga0134058_11200051	3300012379	Grasslands Soil	ETNMRKCKKCQGMMFPERVIDMLDGLIGHFYACANCGRREEAANCIEPMHTSETLSGR*
Ga0134049_13735771	3300012403	Grasslands Soil	PERVLDMLDGLVAHFYACANCGRREEAENCVQPMHSSEVGGSVVSR*
Ga0137373_107761151	3300012532	Vadose Zone Soil	MMFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHD
Ga0137396_107245351	3300012918	Vadose Zone Soil	KKCQGAMFPERVLDMLDGLVAHFYACANCGRREEAENCVQPMHSSEVGGSVVSR*
Ga0137416_102001751	3300012927	Vadose Zone Soil	MFPERVLDMLDGLVAHFYACANCGRREEAENCVQPMHSSEVGGSVVSR*
Ga0163199_10170353	3300013092	Freshwater	MWTVRKLEDQMRKCKKCQGSMFPERVLDMLDGLVAHFYACINCGRREDAAHCVRPMHTAEVGGAARS*
Ga0134085_100495002	3300015359	Grasslands Soil	MFPERVIDMLDGLIGHFYACANCGRREEAANCIEPMHTSETLSGR*
Ga0134085_102359652	3300015359	Grasslands Soil	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAVDPALTNK*
Ga0187781_100527812	3300017972	Tropical Peatland	MRKCKKCQGSMFPERVLDMLDGLVAHFYACANCGRREEAEHCIQPMHAAEVGGAARS
Ga0187782_103672462	3300017975	Tropical Peatland	RRSLMRKCKKCQGSMFPERVLDMLDGLVAHFYACANCGRREEAEHCIQPMHAAEVGGAAR
Ga0184610_10096173	3300017997	Groundwater Sediment	MRKCKKCGGMMFPERVIDMLDGLIGHFFACANCGRREEAAQCIQPMHNSEAVVAAISNK
Ga0184610_10183011	3300017997	Groundwater Sediment	MRKCKKCQGAMFPERVLDMLDGLVAHFYACANCGRREEAEHCIQPMHVPEVSGVAHS
Ga0184604_100415442	3300018000	Groundwater Sediment	MRKCKKCGGMMFPERVIDMLDGLIGHFYACANCGRRDEAARCIQPMHDSESAPVELATKT
Ga0184604_100951201	3300018000	Groundwater Sediment	MRKCKKCGGMMFPERVIDMLDGLIGHFHACANCGRREEAARCIEPMHDSQSSQP
Ga0184604_102910102	3300018000	Groundwater Sediment	MRKCKKCGGMMFPERVIDMLDGLIGHFYACANCGRREEAARCIEPMHNSDSIHPVLTNK
Ga0184605_102975082	3300018027	Groundwater Sediment	MMFPERVIDMLDGLIGHFYACANCGRREEAARCIEPMHNSDSIHPVLTNK
Ga0184608_100100222	3300018028	Groundwater Sediment	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIQPMHDSEAGQPAALTNK
Ga0184608_105050531	3300018028	Groundwater Sediment	MFPERVIDMLDGLIGHFYACANCGRREEAARCIEPMHNSDSVQPVLTNK
Ga0184634_103285591	3300018031	Groundwater Sediment	MRKCKKCKGSMFPERVIDMLDGLVAHFYACAICGRREEAEHCIQPMHHAAEVGGAARS
Ga0184638_10022804	3300018052	Groundwater Sediment	MRKCKKCGGMMFPERVIDMLDGLIGHFFACANCGRREEAAQCIQPMHNSESVVVAISNK
Ga0184638_12653341	3300018052	Groundwater Sediment	MRKCKKCQGSMFPERVLDMLDGLVAHFYACANCGRREEAEHCIQPMHVPEVSGVAHS
Ga0184626_100477243	3300018053	Groundwater Sediment	MRKCKKCGGMMFPERVIDMLDGLIGHFFACANCGRREEAAQCIQPMHNSESVVVAISHK
Ga0184635_101413011	3300018072	Groundwater Sediment	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIQPMHDSEAGQSALINK
Ga0184632_102633162	3300018075	Groundwater Sediment	KCGGMMFPERVIDMLDGLIGHFYACANCGRREEAPRCIQPMHDSEAGQSALINK
Ga0184609_101655402	3300018076	Groundwater Sediment	MMFPERVIDMLDGLIGHFYACANCGRREEAARCIEPMHNSDSIQPVLTNK
Ga0184609_102862191	3300018076	Groundwater Sediment	MFPERVIDMLDGLVGHFYDCANCGRREEAPRCIQPMHDSEAGNPALTNK
Ga0066667_100262632	3300018433	Grasslands Soil	MRKCKKCQGMMFPERVIDMLDGLIGHFYACANCGRREEAANCIEPMHTSETLSGR
Ga0066667_100660173	3300018433	Grasslands Soil	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAGSPALTNK
Ga0066667_109801571	3300018433	Grasslands Soil	ERVLDMLDGLVAHFYACANCGRREEAENCVQPMHSPKVGGSVVSR
Ga0184648_12001761	3300019249	Groundwater Sediment	PKTLEKTMRKCKKCGGMMFPERVIDMLDGLIGHFYACANCGRREEAPRCIQPMHDSEAGQSALINK
Ga0184641_11080152	3300019254	Groundwater Sediment	MMFPERVIDMLDGLIGHFYACANCGRREEAPRCIQPMHDSEAGQSALINK
Ga0184641_14323331	3300019254	Groundwater Sediment	MFPERVIDMLDGLIGHFFACANCGRRDEAARCIQP
Ga0184646_11882892	3300019259	Groundwater Sediment	GPMRKCKKCQGAMFPERVLDMLDGLVAHFYACANCGRREEAEHCIQPMHVPEVSGVAHS
Ga0184646_11997911	3300019259	Groundwater Sediment	MRKCKKCGGMMFPERVIDMLDGLIGHFFACANCGRREEAAQCIQPMHNSESIVAAVSNK
Ga0184646_12761441	3300019259	Groundwater Sediment	LTEQSPTAPKTLEKTMRKCKKCGGMMFPERVIDMLDGLIGHFYACANCGRREEAPRCIQPMHDSEAGQSALINK
Ga0184642_12330051	3300019279	Groundwater Sediment	MFPERVIDMLDGLIGHFYACANCGRREEAARCIEPMHAPDSESVVLSK
Ga0184642_14529862	3300019279	Groundwater Sediment	MFPERVIDMLDGLIGHFHACANCGRREEAARCIEPMHHSEPSQPVLTNK
Ga0193747_10474802	3300019885	Soil	MFPERVIDMLDGLIGHFHACANCGRREEAARCIEPMHNSEPSHPVLTNK
Ga0193733_10081844	3300020022	Soil	MFPERVIDMLDGLIGHFHACANCGRREEAARCIEPMHNSEPSQSVLTNK
Ga0213870_10006482	3300021357	Freshwater	MRKCKKCQGSMFPERVLDMLDGLVAHFYACINCGRREEAAHCIQPMHVAEVGGAARSR
Ga0213870_10098952	3300021357	Freshwater	MRKCKKCGGTMFPERVIDMLDGLIGHFYACFNCGRREEAMRCIEPMHTAELSGSPRA
Ga0212128_1000167918	3300022563	Thermal Springs	MRKCKKCQGTMFPERVIDMLDGLIGNFYACANCGRREEAKLCVQPMHTAEVGGSPQV
Ga0212128_100340134	3300022563	Thermal Springs	MRKCKKCQGAMFPERVIDMLDGLIGHFYACANCGRREEAKQCVQPMHAAEVGEA
Ga0209824_10000004286	3300025173	Wastewater	MRKCKKCQGSMFPERVLDMLDGLVAHFYACINCGRREEAANCIQPMHVAEVGGAARS
Ga0209324_105489302	3300025174	Soil	MRKLEDQMRKCKKCQGSMFPERVLDMLDGLVAHFYACINCGRREDAAHCVRPMHTAEVGGAARS
Ga0207684_1000036348	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAGYPALTNNHQ
Ga0207646_102309802	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIQPMHDSEALTNK
Ga0209235_11084551	3300026296	Grasslands Soil	MRKCKKCQGAMFPERVLDMLDGLVAHFYACANCGRREEAENCVQPMHSSEVGGSVVSR
Ga0209470_11749101	3300026324	Soil	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAVDPALTNK
Ga0209470_12426201	3300026324	Soil	MRKCKKCQGMMFPERVIDMLDGLIGHFYACANCGRREEAANCIEPMHTS
Ga0209577_103037472	3300026552	Soil	TLEKTMRKCKKCGGMMFPERVIDMLDGLIGHFYACANCGRREEAPRCIRPMHDSEAGSPALTNK
Ga0209590_110250231	3300027882	Vadose Zone Soil	KCKKCQGAMFPERVLDMLDGLVAHFYACANCGRREETENCVQPMHSSEVGGSVVSR
Ga0308152_1126971	3300030831	Soil	PERVIDMLDGLIGHFHACANCGRREEAARGIEPMHDSQSSQPVLSNK
Ga0308183_12227371	3300030988	Soil	MFPERVIDMLDGLIGHFYACANCGRRDEAARCIRPMHDSESARAELAAKT
Ga0308189_104661581	3300031058	Soil	MFPERVIDMLDGLIGHFHACANCGRREEAARGIEPMHDSQSSQPVLTNK
Ga0307469_107255842	3300031720	Hardwood Forest Soil	MFPERVIDMLDGLIGHFYACANCGRREEAPRCIQPMHDSEAGNPALTNK
Ga0314864_0136767_43_189	3300033805	Peatland	MFPERVLDMLDGLVAHFYACANCGRREEAEHCIQPMHHAAEVGGVARS

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100830

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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