Metagenome / Metatranscriptome Family F100917

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100917
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	49 residues
Representative Sequence	MNWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPEAQKK
Number of Associated Samples	81
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	97.06 %
% of genes from short scaffolds (< 2000 bps)	82.35 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (68.627 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (44.118 % of family members)
Environment Ontology (ENVO)	Unclassified (84.314 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (88.235 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 17.39% β-sheet: 0.00% Coil/Unstructured: 82.61%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF10415	FumaraseC_C	84.31
PF03706	LPG_synthase_TM	5.88
PF07883	Cupin_2	4.90
PF13473	Cupredoxin_1	0.98
PF03745	DUF309	0.98
PF00403	HMA	0.98
PF00753	Lactamase_B	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	5.88
COG1547	Predicted metal-dependent hydrolase	Function unknown [S]	0.98
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.98
COG2608	Copper chaperone CopZ	Inorganic ion transport and metabolism [P]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
All Organisms	root	All Organisms	31.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
cellular organisms	root	All Organisms → cellular organisms	31.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	7.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	7.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	5.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	5.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	5.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	5.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10160042	Not Available	603	Open in IMG/M
3300002561\|JGI25384J37096_10175340	Not Available	650	Open in IMG/M
3300002561\|JGI25384J37096_10192689	Not Available	604	Open in IMG/M
3300002911\|JGI25390J43892_10009190	All Organisms → cellular organisms → Bacteria	2285	Open in IMG/M
3300002911\|JGI25390J43892_10177267	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	501	Open in IMG/M
3300002916\|JGI25389J43894_1106790	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	507	Open in IMG/M
3300005166\|Ga0066674_10235795	Not Available	869	Open in IMG/M
3300005167\|Ga0066672_10497006	Not Available	793	Open in IMG/M
3300005174\|Ga0066680_10130796	All Organisms → cellular organisms → Bacteria	1559	Open in IMG/M
3300005176\|Ga0066679_10405894	Not Available	892	Open in IMG/M
3300005176\|Ga0066679_10634397	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	696	Open in IMG/M
3300005177\|Ga0066690_10482393	Not Available	836	Open in IMG/M
3300005179\|Ga0066684_10138247	Not Available	1535	Open in IMG/M
3300005180\|Ga0066685_10168992	Not Available	1493	Open in IMG/M
3300005180\|Ga0066685_10211685	Not Available	1331	Open in IMG/M
3300005180\|Ga0066685_10539587	Not Available	805	Open in IMG/M
3300005450\|Ga0066682_10168771	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300005552\|Ga0066701_10428107	Not Available	820	Open in IMG/M
3300005552\|Ga0066701_10901421	Not Available	524	Open in IMG/M
3300005554\|Ga0066661_10232260	Not Available	1143	Open in IMG/M
3300005556\|Ga0066707_10000269	All Organisms → cellular organisms → Bacteria	14889	Open in IMG/M
3300005558\|Ga0066698_10682009	Not Available	680	Open in IMG/M
3300005560\|Ga0066670_10069503	All Organisms → cellular organisms → Bacteria	1888	Open in IMG/M
3300005561\|Ga0066699_10883025	Not Available	625	Open in IMG/M
3300005561\|Ga0066699_11197940	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	521	Open in IMG/M
3300005569\|Ga0066705_10016866	All Organisms → cellular organisms → Bacteria	3667	Open in IMG/M
3300005574\|Ga0066694_10591874	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	517	Open in IMG/M
3300006046\|Ga0066652_100259124	Not Available	1526	Open in IMG/M
3300006046\|Ga0066652_101744891	Not Available	565	Open in IMG/M
3300006755\|Ga0079222_10504975	Not Available	887	Open in IMG/M
3300006791\|Ga0066653_10439187	Not Available	666	Open in IMG/M
3300006797\|Ga0066659_10200879	All Organisms → cellular organisms → Bacteria	1459	Open in IMG/M
3300006954\|Ga0079219_11257941	Not Available	647	Open in IMG/M
3300007258\|Ga0099793_10015638	All Organisms → cellular organisms → Bacteria	3031	Open in IMG/M
3300009012\|Ga0066710_103876776	Not Available	561	Open in IMG/M
3300009038\|Ga0099829_11776620	Not Available	505	Open in IMG/M
3300009137\|Ga0066709_100090070	All Organisms → cellular organisms → Bacteria	3707	Open in IMG/M
3300009137\|Ga0066709_100426112	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1848	Open in IMG/M
3300009137\|Ga0066709_101289886	Not Available	1072	Open in IMG/M
3300009137\|Ga0066709_102988709	Not Available	621	Open in IMG/M
3300010128\|Ga0127486_1025991	Not Available	565	Open in IMG/M
3300010301\|Ga0134070_10016900	All Organisms → cellular organisms → Bacteria	2346	Open in IMG/M
3300010303\|Ga0134082_10391536	Not Available	593	Open in IMG/M
3300010304\|Ga0134088_10062698	All Organisms → cellular organisms → Bacteria	1718	Open in IMG/M
3300010320\|Ga0134109_10299076	Not Available	619	Open in IMG/M
3300010322\|Ga0134084_10003714	All Organisms → cellular organisms → Bacteria	3480	Open in IMG/M
3300010329\|Ga0134111_10116831	Not Available	1035	Open in IMG/M
3300010333\|Ga0134080_10058500	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300010335\|Ga0134063_10239531	Not Available	861	Open in IMG/M
3300010336\|Ga0134071_10334011	Not Available	764	Open in IMG/M
3300010336\|Ga0134071_10340770	Not Available	757	Open in IMG/M
3300010337\|Ga0134062_10133755	Not Available	1090	Open in IMG/M
3300010337\|Ga0134062_10775464	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	511	Open in IMG/M
3300012096\|Ga0137389_11002309	Not Available	716	Open in IMG/M
3300012200\|Ga0137382_10215912	Not Available	1321	Open in IMG/M
3300012209\|Ga0137379_11178591	Not Available	672	Open in IMG/M
3300012211\|Ga0137377_11824891	Not Available	527	Open in IMG/M
3300012349\|Ga0137387_10000704	All Organisms → cellular organisms → Bacteria	15195	Open in IMG/M
3300012356\|Ga0137371_10635047	Not Available	819	Open in IMG/M
3300012362\|Ga0137361_10372917	Not Available	1310	Open in IMG/M
3300012400\|Ga0134048_1070661	Not Available	681	Open in IMG/M
3300012404\|Ga0134024_1029468	Not Available	714	Open in IMG/M
3300012532\|Ga0137373_10590784	Not Available	838	Open in IMG/M
3300012683\|Ga0137398_11245916	Not Available	506	Open in IMG/M
3300012972\|Ga0134077_10481148	Not Available	547	Open in IMG/M
3300014157\|Ga0134078_10360725	Not Available	642	Open in IMG/M
3300015359\|Ga0134085_10352699	Not Available	654	Open in IMG/M
3300015359\|Ga0134085_10548562	Not Available	533	Open in IMG/M
3300017656\|Ga0134112_10323344	Not Available	624	Open in IMG/M
3300017657\|Ga0134074_1005097	All Organisms → cellular organisms → Bacteria	4207	Open in IMG/M
3300017657\|Ga0134074_1263962	Not Available	621	Open in IMG/M
3300017657\|Ga0134074_1384609	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	521	Open in IMG/M
3300018433\|Ga0066667_10622381	Not Available	901	Open in IMG/M
3300018433\|Ga0066667_11116564	Not Available	683	Open in IMG/M
3300021178\|Ga0210408_10397985	Not Available	1097	Open in IMG/M
3300026296\|Ga0209235_1203680	Not Available	676	Open in IMG/M
3300026296\|Ga0209235_1210291	Not Available	649	Open in IMG/M
3300026298\|Ga0209236_1205107	Not Available	734	Open in IMG/M
3300026310\|Ga0209239_1063659	Not Available	1627	Open in IMG/M
3300026313\|Ga0209761_1259698	Not Available	655	Open in IMG/M
3300026314\|Ga0209268_1042529	All Organisms → cellular organisms → Bacteria	1486	Open in IMG/M
3300026318\|Ga0209471_1081346	Not Available	1430	Open in IMG/M
3300026323\|Ga0209472_1005194	All Organisms → cellular organisms → Bacteria	6958	Open in IMG/M
3300026327\|Ga0209266_1295031	Not Available	510	Open in IMG/M
3300026329\|Ga0209375_1189347	Not Available	799	Open in IMG/M
3300026329\|Ga0209375_1327317	Not Available	501	Open in IMG/M
3300026330\|Ga0209473_1032501	All Organisms → cellular organisms → Bacteria	2353	Open in IMG/M
3300026332\|Ga0209803_1000748	All Organisms → cellular organisms → Bacteria	21896	Open in IMG/M
3300026334\|Ga0209377_1004300	All Organisms → cellular organisms → Bacteria	9008	Open in IMG/M
3300026334\|Ga0209377_1276181	Not Available	555	Open in IMG/M
3300026335\|Ga0209804_1134861	Not Available	1114	Open in IMG/M
3300026523\|Ga0209808_1017931	All Organisms → cellular organisms → Bacteria	3540	Open in IMG/M
3300026528\|Ga0209378_1012300	All Organisms → cellular organisms → Bacteria	5090	Open in IMG/M
3300026530\|Ga0209807_1017918	All Organisms → cellular organisms → Bacteria	3467	Open in IMG/M
3300026540\|Ga0209376_1248629	Not Available	762	Open in IMG/M
3300026547\|Ga0209156_10158185	Not Available	1096	Open in IMG/M
3300026547\|Ga0209156_10170307	Not Available	1049	Open in IMG/M
3300026548\|Ga0209161_10113269	Not Available	1617	Open in IMG/M
3300026550\|Ga0209474_10160158	All Organisms → cellular organisms → Bacteria	1460	Open in IMG/M
3300027725\|Ga0209178_1058383	Not Available	1246	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	61.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	44.12%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	22.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	17.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010128	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012400	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012404	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_101600422	3300002558	Grasslands Soil	MSWIVAGLIAGVGAFFSDFVMWGKVFTGPEMRAFGTMPPTPEE
JGI25384J37096_101753402	3300002561	Grasslands Soil	MSWIVAGLIAGVGAFFADYVMWGKVFTGPEMRGFGTMPPTPEEGKKMMAANMPKAAALA
JGI25384J37096_101926891	3300002561	Grasslands Soil	MXWIVAGLIAGVGAFFSDFVMWGKVFTGPEMRAFGTMPPTPEE
JGI25390J43892_100091901	3300002911	Grasslands Soil	MNWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPEAQKKLMASNMPK
JGI25390J43892_101772672	3300002911	Grasslands Soil	MNWIVAGLIAGVGAFFSDYVMWGKVFTGPEVHGFATMPPTPEEQKKMMLPAMLK
JGI25389J43894_11067901	3300002916	Grasslands Soil	MHWIVAGLIAGVGAFFADYVMWGKVFTGPEMHAFGTLPSTPAARKEMMLPAMLKSGALAL
Ga0066674_102357951	3300005166	Soil	MTWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPT
Ga0066672_104970062	3300005167	Soil	MNWILAGLLAGVGAFFSDFVMWGKVFTGPEMRAFGTMPPTPEEQKKMM
Ga0066680_101307962	3300005174	Soil	MSWIVAGLVAGVGAFFADYVMWGKVFTGPEMRAFGTMPPTPEEGKKMMAA
Ga0066679_104058941	3300005176	Soil	MNWIVAGLIAAVGAFFSDYVMWGKVFTGPEMRAFGTMPPTPEEQKKMM
Ga0066679_106343971	3300005176	Soil	MNWILAGLLAGVGAFFSDFVMWGKVFTGPEMRAFGTMPPTP*
Ga0066690_104823932	3300005177	Soil	MNWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPEAQKKLMASNMPKAA
Ga0066684_101382472	3300005179	Soil	MHWIVAGLIAGVGAFFADYVMWGKVFTGPEMHAYGTMPPTPAEQKKLMAANMPKA
Ga0066685_101689922	3300005180	Soil	MNWIVAGLIAGVGAFFSDYVMWGKVFTSPEMHAFGTMPPRPEDAKKMMAAN
Ga0066685_102116851	3300005180	Soil	MNWIVAGLIAGVGAFFSDYVMWGKVFTGPEVHGFATMPPTPEEQKKMMLP
Ga0066685_105395872	3300005180	Soil	MHWIVAGLIAGVGAWIADYVMWGKVFTGPEMHAFGTMPPTPEEQKKVMAANMP
Ga0066682_101687712	3300005450	Soil	MNWIVAGLIAGVGAFFADFVMWGKVFTGPEMRAFGTMPPTPEEQKKMMLPAMLKSGALALVFG
Ga0066701_104281071	3300005552	Soil	MHWIVAGLIAGVGAFFADYVMWGKVFTGPDMHAFGTMPPTPAEQQKLMVANLPK
Ga0066701_109014211	3300005552	Soil	MSWIVAGLIGGVGAFFADYVMWGKVFTGPEMQAFGT
Ga0066661_102322601	3300005554	Soil	MHWIVAGLIAGVGAWIADYVMWGKVFTGPEMHAFGTMPPTPEEQKKVMAANMPKSAVLAL
Ga0066707_100002691	3300005556	Soil	MNWILAGLLAGVGAFFSDFVMWGKVFTGPEMRAFGTMPPTP
Ga0066698_106820092	3300005558	Soil	MNWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPEAQKKLMASN
Ga0066670_100695033	3300005560	Soil	MSWIVAGLIAGVGAFFADFVMWGKVFTGPEMRAFGTMPPTPEERK
Ga0066699_108830251	3300005561	Soil	MSWIVAGLIAGVGAFFADFVMWGKVFTGPEMRGFGTMPPTPEEQKKLMA
Ga0066699_111979401	3300005561	Soil	MHWIVAGLIAGVGAFFADYVTWGKVFTGPEMHAFGTMPPTPEAQKEMMLPAMLKTGALAL
Ga0066705_100168661	3300005569	Soil	MNWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPEAQKKLMASNMPKAAALALVFGL
Ga0066694_105918742	3300005574	Soil	MSWIVAGLIGGVGAFFSDFVMWGKVFTGPEMRAFGTMPPTPEEGKKMMAANMPKA
Ga0066652_1002591242	3300006046	Soil	MHWIVAGLIAGVGAFFADYVTWGKIFTGPEMHGFGTMPPTPEER
Ga0066652_1017448911	3300006046	Soil	MSWIVAGLVAGVGAFFADYVMWGKVFTGPEMRAFGTMPPTPQEGKKMMAANMPKA
Ga0079222_105049752	3300006755	Agricultural Soil	MSWIVAGLIAGVGAFVADYVMWGKVFTGPEMHAFGTMPPTPEEQKKLMAANMPKSAAL
Ga0066653_104391871	3300006791	Soil	MNWIVPGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPEAQKKLMASNMPK
Ga0066659_102008792	3300006797	Soil	MNWILAGLLAGVGAFFSDFVMWGKVFTGPEMRAFGTMPPTPQEQ
Ga0079219_112579411	3300006954	Agricultural Soil	MHWIVAGLIAGVGAWIADYVMWGKVFTGPEMHAFGTMPPTPEEQKKLM
Ga0099793_100156381	3300007258	Vadose Zone Soil	MNWIVAGLIAAVGAFFSDYVMWGKVFTGPEMRAFGTMPPTPEEQKKMMLPAMLKSAALALVFGLL
Ga0066710_1038767762	3300009012	Grasslands Soil	MNWILAGLLAGVGAFFSDFVMWGKVFTGPEMRAFGTMPPTPEEQKKMMLPAML
Ga0099829_117766202	3300009038	Vadose Zone Soil	MSWIVAGLIGGVGAFFADWLMWGKVFTTGMEAFGTQRSPEEMQKLMM
Ga0066709_1000900701	3300009137	Grasslands Soil	MHWIVAGLIAGVGAWIADYVMWGKVFTGPEMHAFGTMPPTPEEQKKVMAANMPKS
Ga0066709_1004261123	3300009137	Grasslands Soil	MSWIVAGLIAGVGAFFSDFVMWGKVFTGPEMRAFGTMPPTP
Ga0066709_1012898862	3300009137	Grasslands Soil	MHWIVAGLIAGVGAFFADYVMWGKVFTGPDMHAFGTMPPT
Ga0066709_1029887092	3300009137	Grasslands Soil	MNWIVAGLIAGVGAFFADFVMWGKVFTGPEMRTFSTMPPTPEE
Ga0127486_10259911	3300010128	Grasslands Soil	MNWIVAGLIAGVGAFFADYVMWGKIFTGPEMHAFGTMPPTPEE
Ga0134070_100169001	3300010301	Grasslands Soil	MSWIVAGLVAGVGAFFADYVMWGKVFTGPEMRAFGTMPPTPEEGKKMMAANMPKAAA
Ga0134082_103915361	3300010303	Grasslands Soil	MSWIVAGLIAGVGAFFADFVMWGKVFTGPEMRGFGTMPPTPEEQKKL
Ga0134088_100626981	3300010304	Grasslands Soil	MSWIVAGLIAGVGAFFSDFVMWGKVFTGPEMRTFGTMPPTPEEGKKMMAANMPK
Ga0134109_102990762	3300010320	Grasslands Soil	MTWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPEAQKK
Ga0134084_100037146	3300010322	Grasslands Soil	MNWIVAGLIGGVGAFFADFVMWGKVFTKGMEQYGTMAATPEEG
Ga0134111_101168312	3300010329	Grasslands Soil	MSWIVAGLIAGVGAFFSDFVMWGKVFTGPEMRAFGTMPPTPEEGKKM
Ga0134080_100585001	3300010333	Grasslands Soil	MHWIVAGLIAGVGAWIADYVMWGKVFTGPEMHAFGTMPPTPEEQKKLMAANMPKSAVLAL
Ga0134063_102395311	3300010335	Grasslands Soil	MNWIVAGLIAGVGAFFADYVMWGKVFTGPEMHAFGTMPSRPEDAKKMMAAN
Ga0134071_103340112	3300010336	Grasslands Soil	MNWIVAGLIAGVGAFFADYVMWGKVFTGAEMHAFGTMPPTPEE
Ga0134071_103407701	3300010336	Grasslands Soil	MHWIVAGLIAGVGAWIADYVMWGKVFTGPEMHAFGTMPPTPEEQKKVM
Ga0134062_101337551	3300010337	Grasslands Soil	MNWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPEAQKKLMASNMP
Ga0134062_107754642	3300010337	Grasslands Soil	MTWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPEAQKKLMASNMP
Ga0137389_110023091	3300012096	Vadose Zone Soil	MNWIVAGLIAGVGAFFSDYVMWGKVFTGPEMHGFGTMPPTPEEQKKMMLPAMLKSGALAL
Ga0137382_102159122	3300012200	Vadose Zone Soil	MHWTVAGLIAGVGAWIADYVMWGKVFTGPEMHAFGTMPPTPEEQ
Ga0137379_111785911	3300012209	Vadose Zone Soil	MTWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPDERKKMMLPAML
Ga0137377_118248912	3300012211	Vadose Zone Soil	MHWIVAGLIAGVGAWIADYVMWGKVFTGPEMHAFGT
Ga0137387_100007041	3300012349	Vadose Zone Soil	MHWIVAGLIAGVGAFFADYVMWGKVFAGPDMHAFGTTPPTPAEQQKLMAANLPKSALLAL
Ga0137371_106350471	3300012356	Vadose Zone Soil	MTWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPDERKKMMLPAMLKSGALAL
Ga0137361_103729171	3300012362	Vadose Zone Soil	MSWIVAGLIAGVGAFFSDYVMWGKVFTSPEMHAFGTMPPRPEDAKKMMAANMPKAAALAL
Ga0134048_10706612	3300012400	Grasslands Soil	MTWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPE
Ga0134024_10294682	3300012404	Grasslands Soil	MTWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPEAQKKLM
Ga0137373_105907841	3300012532	Vadose Zone Soil	MHWVVGGLIGGVGAFVADWVMWGKVFTKGMEQYGTTAATPEEGKKMMAANL
Ga0137398_112459162	3300012683	Vadose Zone Soil	MHWIVVGLIAGVGAFFADFVMWGKVFTKGMDAFST
Ga0137407_114451992	3300012930	Vadose Zone Soil	MHWIVAGLIAGVGAFFSDYVMWGKVFTKGMDAFSTPRSPEQ
Ga0134077_104811482	3300012972	Grasslands Soil	MHWIVAGLIAGVGAFFADYVMWGKVFTGPAMEAFG
Ga0134078_103607252	3300014157	Grasslands Soil	MNWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPEAQKK
Ga0134085_103526991	3300015359	Grasslands Soil	MTWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPDERKKMMLPAM
Ga0134085_105485622	3300015359	Grasslands Soil	MNWILAGLLAGVGAFFSDFVMWGKVFTGPEMRAFGTMPPT
Ga0134112_103233442	3300017656	Grasslands Soil	MNWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPP
Ga0134074_10050977	3300017657	Grasslands Soil	MSWIVAGLVAGVGAFFADYVMWGKVFTGPEMRAFGTMPPTPEEGK
Ga0134074_12639622	3300017657	Grasslands Soil	MTWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPDERK
Ga0134074_13846092	3300017657	Grasslands Soil	MNWIVAGLIAGVGAFFADYVMWGKIFTGPEMHAFGTMPPTPEERKKMMLPAMLKS
Ga0066667_106223812	3300018433	Grasslands Soil	MHWIVAGLIAGVGAFFADYVTWGKIFTGPEMHGFGTMPPTPEERKQMMLPAML
Ga0066667_111165642	3300018433	Grasslands Soil	MHWIVAGLIAGVGAFFADFVMWGKVFTGPEMHAFGTLPSTPQARKEMMLPAMLKS
Ga0210408_103979852	3300021178	Soil	MHWIVAGLIAGVGAFFADYVMWGKVFTGPEMHAFGTMPSTPEELKKQMAANMPKSAALAL
Ga0209235_12036802	3300026296	Grasslands Soil	MSWIVAGLIAGVGAFFSDFVMWGKVFTGPEMRAFGTMPPTPEEGKKMMAANMPKAAALAL
Ga0209235_12102912	3300026296	Grasslands Soil	MNWILAGLLAGVGAFFSDYVMWGKVFTGPEMRTFSTMPPTPEEQKKMMLPAMLKSAVLAL
Ga0209236_12051071	3300026298	Grasslands Soil	MNWIFAGLLAGVGAFFSDFVMWGKVFTGPEMRAFGTM
Ga0209239_10636592	3300026310	Grasslands Soil	MHWIVAGLIAGVGAFFADYVMWGKVFTGPEMHAFGTTPPTPAAQ
Ga0209761_12596981	3300026313	Grasslands Soil	MSWIVAGLIAGVGAFFSDFVMWGKVFTGPEMRAFGTMPPTPEEGKKMMAANM
Ga0209268_10425292	3300026314	Soil	MHWIVAGLIAGVGAFFADYVMWGKVFTGPEMHAFGTMPPTPEAQKEMMLPAMLK
Ga0209471_10813461	3300026318	Soil	MNWIVAGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPDERKKMMLPAMLKSGAL
Ga0209472_100519411	3300026323	Soil	MHWIVAGLIAGVGAFFADYVMWGKVFTGPEMHAFGTMPPTPEA
Ga0209470_13653731	3300026324	Soil	MSWIVAGLIASVGAFFSDFVMWGKVFTGPEMRAFGTMPPTPEEGKKMMAANMPKAAALALIFGLLL
Ga0209266_12950311	3300026327	Soil	MNWIVPGLIAGVGAFFADYVMWGKVFTGPEMHGFGTMPPTPEAQKKL
Ga0209375_11893472	3300026329	Soil	MNWIVAGLIAGVGAFFSDYVMWGKVFTGPEVHGFATMPPTPEEQKKMML
Ga0209375_13273172	3300026329	Soil	MHWIVAGLIAGVGAFFADYVTWGKIFTGPEMHGFGTMPPTPE
Ga0209473_10325011	3300026330	Soil	MNWIVAGLIAGVGAFFADFVMWGKVFTGPEMRTFSTMPPTPE
Ga0209803_100074828	3300026332	Soil	MSWIVAGLIGGVGAFFADYVMWGKVFTGPEMQAFGTFPPTPEEGKKMMAANLPK
Ga0209377_10043001	3300026334	Soil	MSWIVAGLIAGVGAFFSDFVMWGKVFTGPEMRAFGTMPPT
Ga0209377_12761812	3300026334	Soil	MHWIVAGLIAGVGAWIADYVMWGKVFTGPEMHAFGTMPPT
Ga0209804_11348612	3300026335	Soil	MSWIVAGLIAGVGAFFADFVMWGKVFTGPEMHAFGTMPPTPQER
Ga0209808_10179316	3300026523	Soil	MHWIVAGLIAGVGAFFADYVMWGKVFTGPEMHAFGT
Ga0209378_10123001	3300026528	Soil	MNWIVAGLIAGVGAFFSDYVMWGKVFTSPEMHAFGTMPPRPED
Ga0209807_10179181	3300026530	Soil	MNWIVAGLIAGVGAFFADFVMWGKVFTGPEMRTFSTMPPTPEERKKMMLPAMMKSAV
Ga0209376_12486291	3300026540	Soil	MHWIVAGLIAGVGAWIADYVMWGKVFTGPEMHAFGTMPPTPEEQKKVMAANMPKSAV
Ga0209156_101581851	3300026547	Soil	MNWIVAGLIGGVGAFFADFVMWGKVFTKGMEQYGTMAATPEEGKK
Ga0209156_101703072	3300026547	Soil	MHWIVAGLIAGVGAFFADFVMWGKVFTGPEMHAFGTL
Ga0209161_101132691	3300026548	Soil	MHWIVAGLIAGVGAFFADYVMWGKVFTGPEMHAFGTTPPTPEGQKKLMAANMPKAAL
Ga0209474_101601582	3300026550	Soil	MHWIVAGLIAGVGAFFADYVMWGKVFTGPEMHAYGTMPPTPAEQKKLMAAN
Ga0209178_10583831	3300027725	Agricultural Soil	MNWIVAGLIGGVGAFFADYVMWGKVFTGPEMQAFGTFPASPEEGKKMMAANMPKSAVL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100917

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences