Basic Information | |
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Family ID | F101042 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 102 |
Average Sequence Length | 39 residues |
Representative Sequence | MTVNQAKLVNANADTFDFSAMSFTGNTVRGAANESRFALAA |
Number of Associated Samples | 70 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 34.31 % |
% of genes near scaffold ends (potentially truncated) | 26.47 % |
% of genes from short scaffolds (< 2000 bps) | 69.61 % |
Associated GOLD sequencing projects | 63 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.17 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (59.804 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (29.412 % of family members) |
Environment Ontology (ENVO) | Unclassified (78.431 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (86.275 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 5.80% β-sheet: 0.00% Coil/Unstructured: 94.20% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.17 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 102 Family Scaffolds |
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PF00313 | CSD | 26.47 |
PF00578 | AhpC-TSA | 7.84 |
PF07437 | YfaZ | 6.86 |
PF13505 | OMP_b-brl | 4.90 |
PF02915 | Rubrerythrin | 4.90 |
PF04304 | DUF454 | 3.92 |
PF05488 | PAAR_motif | 3.92 |
PF07012 | Curlin_rpt | 1.96 |
PF13759 | 2OG-FeII_Oxy_5 | 1.96 |
PF03401 | TctC | 0.98 |
PF00301 | Rubredoxin | 0.98 |
PF00149 | Metallophos | 0.98 |
PF12849 | PBP_like_2 | 0.98 |
PF09694 | Gcw_chp | 0.98 |
PF05221 | AdoHcyase | 0.98 |
PF13946 | DUF4214 | 0.98 |
PF00085 | Thioredoxin | 0.98 |
PF10417 | 1-cysPrx_C | 0.98 |
COG ID | Name | Functional Category | % Frequency in 102 Family Scaffolds |
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COG2832 | Uncharacterized membrane protein YbaN, DUF454 family | Function unknown [S] | 3.92 |
COG4104 | Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion | Intracellular trafficking, secretion, and vesicular transport [U] | 3.92 |
COG0499 | S-adenosylhomocysteine hydrolase | Coenzyme transport and metabolism [H] | 0.98 |
COG3181 | Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC | Energy production and conversion [C] | 0.98 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 59.80 % |
All Organisms | root | All Organisms | 40.20 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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2035265000|ErSWdraf_F5BXKTZ02HPAOS | Not Available | 508 | Open in IMG/M |
3300001605|Draft_10029772 | Not Available | 4926 | Open in IMG/M |
3300002835|B570J40625_100390154 | Not Available | 1359 | Open in IMG/M |
3300003277|JGI25908J49247_10017514 | Not Available | 2162 | Open in IMG/M |
3300004793|Ga0007760_11388063 | Not Available | 769 | Open in IMG/M |
3300005517|Ga0070374_10066561 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1877 | Open in IMG/M |
3300005517|Ga0070374_10284822 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED46 | 840 | Open in IMG/M |
3300005525|Ga0068877_10701696 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 542 | Open in IMG/M |
3300005527|Ga0068876_10185001 | Not Available | 1213 | Open in IMG/M |
3300005581|Ga0049081_10054819 | Not Available | 1507 | Open in IMG/M |
3300005662|Ga0078894_10019426 | All Organisms → cellular organisms → Bacteria | 5472 | Open in IMG/M |
3300005662|Ga0078894_10055493 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3372 | Open in IMG/M |
3300005662|Ga0078894_10057367 | Not Available | 3320 | Open in IMG/M |
3300005662|Ga0078894_10141094 | Not Available | 2157 | Open in IMG/M |
3300005662|Ga0078894_10401530 | Not Available | 1238 | Open in IMG/M |
3300005662|Ga0078894_10470036 | Not Available | 1131 | Open in IMG/M |
3300006639|Ga0079301_1083275 | Not Available | 995 | Open in IMG/M |
3300008052|Ga0102893_1070514 | Not Available | 1049 | Open in IMG/M |
3300008113|Ga0114346_1269390 | Not Available | 615 | Open in IMG/M |
3300008116|Ga0114350_1019882 | Not Available | 5258 | Open in IMG/M |
3300008120|Ga0114355_1023155 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 4771 | Open in IMG/M |
3300009068|Ga0114973_10348732 | Not Available | 782 | Open in IMG/M |
3300009152|Ga0114980_10484864 | Not Available | 705 | Open in IMG/M |
3300009155|Ga0114968_10091978 | Not Available | 1866 | Open in IMG/M |
3300009158|Ga0114977_10029795 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 3421 | Open in IMG/M |
3300009158|Ga0114977_10269640 | Not Available | 977 | Open in IMG/M |
3300009158|Ga0114977_10443742 | Not Available | 717 | Open in IMG/M |
3300009159|Ga0114978_10030934 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 3825 | Open in IMG/M |
3300009159|Ga0114978_10051836 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 2829 | Open in IMG/M |
3300009159|Ga0114978_10088258 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium TMED143 | 2064 | Open in IMG/M |
3300009160|Ga0114981_10257965 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 949 | Open in IMG/M |
3300009164|Ga0114975_10021396 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3921 | Open in IMG/M |
3300009164|Ga0114975_10099395 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1683 | Open in IMG/M |
3300009164|Ga0114975_10100096 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1676 | Open in IMG/M |
3300009164|Ga0114975_10177653 | Not Available | 1209 | Open in IMG/M |
3300009180|Ga0114979_10426617 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 773 | Open in IMG/M |
3300009183|Ga0114974_10000626 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 29035 | Open in IMG/M |
3300009419|Ga0114982_1124825 | Not Available | 794 | Open in IMG/M |
3300010885|Ga0133913_10121269 | Not Available | 7007 | Open in IMG/M |
3300010885|Ga0133913_11044322 | Not Available | 2109 | Open in IMG/M |
3300012346|Ga0157141_1049582 | Not Available | 517 | Open in IMG/M |
3300013004|Ga0164293_10054565 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3206 | Open in IMG/M |
3300013004|Ga0164293_10212497 | Not Available | 1389 | Open in IMG/M |
3300013005|Ga0164292_10026154 | All Organisms → cellular organisms → Bacteria | 4728 | Open in IMG/M |
3300013006|Ga0164294_10098810 | Not Available | 2167 | Open in IMG/M |
(restricted) 3300013126|Ga0172367_10003327 | Not Available | 21001 | Open in IMG/M |
3300018868|Ga0187844_10108167 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae | 1248 | Open in IMG/M |
3300020141|Ga0211732_1137099 | Not Available | 671 | Open in IMG/M |
3300020141|Ga0211732_1292597 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium TMED143 | 1196 | Open in IMG/M |
3300020141|Ga0211732_1499556 | Not Available | 505 | Open in IMG/M |
3300020151|Ga0211736_10232088 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 4168 | Open in IMG/M |
3300020151|Ga0211736_10322387 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium TMED143 | 1260 | Open in IMG/M |
3300020151|Ga0211736_10671560 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3119 | Open in IMG/M |
3300020151|Ga0211736_10849569 | Not Available | 639 | Open in IMG/M |
3300020159|Ga0211734_10653025 | Not Available | 627 | Open in IMG/M |
3300020159|Ga0211734_11028088 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 2370 | Open in IMG/M |
3300020160|Ga0211733_10777732 | Not Available | 1529 | Open in IMG/M |
3300020160|Ga0211733_10906868 | Not Available | 957 | Open in IMG/M |
3300020161|Ga0211726_10008035 | Not Available | 527 | Open in IMG/M |
3300020161|Ga0211726_10032658 | Not Available | 673 | Open in IMG/M |
3300020161|Ga0211726_10340560 | All Organisms → Viruses → Predicted Viral | 1691 | Open in IMG/M |
3300020162|Ga0211735_10935985 | Not Available | 735 | Open in IMG/M |
3300020162|Ga0211735_11129316 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium TMED143 | 1618 | Open in IMG/M |
3300020162|Ga0211735_11138558 | Not Available | 922 | Open in IMG/M |
3300020172|Ga0211729_10171849 | Not Available | 796 | Open in IMG/M |
3300021438|Ga0213920_1050831 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 862 | Open in IMG/M |
3300021961|Ga0222714_10179164 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1242 | Open in IMG/M |
3300021962|Ga0222713_10358977 | Not Available | 909 | Open in IMG/M |
3300021963|Ga0222712_10484090 | Not Available | 735 | Open in IMG/M |
3300021964|Ga0222719_10341620 | Not Available | 953 | Open in IMG/M |
3300022407|Ga0181351_1122122 | Not Available | 975 | Open in IMG/M |
3300022594|Ga0236340_1002518 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 7616 | Open in IMG/M |
3300024350|Ga0255167_1025033 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1136 | Open in IMG/M |
3300027144|Ga0255102_1043643 | Not Available | 731 | Open in IMG/M |
3300027146|Ga0255104_1040235 | Not Available | 807 | Open in IMG/M |
(restricted) 3300027728|Ga0247836_1083586 | All Organisms → Viruses → Predicted Viral | 1616 | Open in IMG/M |
3300027733|Ga0209297_1202530 | Not Available | 786 | Open in IMG/M |
3300027733|Ga0209297_1317845 | Not Available | 575 | Open in IMG/M |
3300027734|Ga0209087_1330087 | Not Available | 533 | Open in IMG/M |
3300027759|Ga0209296_1001567 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 17354 | Open in IMG/M |
3300027759|Ga0209296_1012594 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 5012 | Open in IMG/M |
3300027759|Ga0209296_1089548 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1495 | Open in IMG/M |
3300027763|Ga0209088_10216342 | Not Available | 812 | Open in IMG/M |
3300027782|Ga0209500_10025035 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 3423 | Open in IMG/M |
3300027793|Ga0209972_10040557 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 2606 | Open in IMG/M |
3300027798|Ga0209353_10066233 | Not Available | 1649 | Open in IMG/M |
3300027805|Ga0209229_10194294 | Not Available | 910 | Open in IMG/M |
3300027836|Ga0209230_10023797 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2990 | Open in IMG/M |
3300027963|Ga0209400_1124071 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Janthinobacterium → Janthinobacterium agaricidamnosum → Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 | 1163 | Open in IMG/M |
3300027963|Ga0209400_1137270 | Not Available | 1083 | Open in IMG/M |
3300027969|Ga0209191_1053608 | Not Available | 1835 | Open in IMG/M |
3300027969|Ga0209191_1065217 | Not Available | 1625 | Open in IMG/M |
(restricted) 3300027977|Ga0247834_1159079 | Not Available | 902 | Open in IMG/M |
(restricted) 3300028114|Ga0247835_1012997 | Not Available | 5167 | Open in IMG/M |
(restricted) 3300028581|Ga0247840_10084381 | All Organisms → Viruses → Predicted Viral | 2182 | Open in IMG/M |
3300032050|Ga0315906_10362959 | Not Available | 1277 | Open in IMG/M |
3300034020|Ga0335002_0474510 | Not Available | 675 | Open in IMG/M |
3300034062|Ga0334995_0301302 | Not Available | 1050 | Open in IMG/M |
3300034102|Ga0335029_0261263 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1113 | Open in IMG/M |
3300034102|Ga0335029_0322794 | Not Available | 964 | Open in IMG/M |
3300034106|Ga0335036_0553113 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 707 | Open in IMG/M |
3300034108|Ga0335050_0118684 | Not Available | 1497 | Open in IMG/M |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Habitat | Taxonomy | Distribution |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 29.41% |
Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 19.61% |
Freshwater Lake | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake | 14.71% |
Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 14.71% |
Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 3.92% |
Freshwater, Plankton | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton | 2.94% |
Freshwater | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater | 2.94% |
Freshwater And Sediment | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment | 1.96% |
Deep Subsurface | Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface | 1.96% |
Freshwater | Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater | 0.98% |
Freshwater | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater | 0.98% |
Freshwater Lentic | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic | 0.98% |
Freshwater | Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater | 0.98% |
Freshwater | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater | 0.98% |
Freshwater | Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater | 0.98% |
Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 0.98% |
Hydrocarbon Resource Environments | Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments | 0.98% |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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2035265000 | Freshwater microbial communities from Swedish Lakes - surface of Lake Erken | Environmental | Open in IMG/M |
3300001605 | Tailings pond microbial communities from Northern Alberta - Syncrude Mildred Lake Settling Basin | Engineered | Open in IMG/M |
3300002835 | Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605) | Environmental | Open in IMG/M |
3300003277 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD | Environmental | Open in IMG/M |
3300004793 | Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300005517 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4) | Environmental | Open in IMG/M |
3300005525 | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG | Environmental | Open in IMG/M |
3300005527 | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG | Environmental | Open in IMG/M |
3300005581 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF | Environmental | Open in IMG/M |
3300005662 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4) | Environmental | Open in IMG/M |
3300006639 | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 | Environmental | Open in IMG/M |
3300008052 | Estuarine microbial communities from the Columbia River estuary - metaG 1553A-02 | Environmental | Open in IMG/M |
3300008113 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA | Environmental | Open in IMG/M |
3300008116 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA | Environmental | Open in IMG/M |
3300008120 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA | Environmental | Open in IMG/M |
3300009068 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG | Environmental | Open in IMG/M |
3300009152 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG | Environmental | Open in IMG/M |
3300009155 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG | Environmental | Open in IMG/M |
3300009158 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG | Environmental | Open in IMG/M |
3300009159 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG | Environmental | Open in IMG/M |
3300009160 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG | Environmental | Open in IMG/M |
3300009164 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG | Environmental | Open in IMG/M |
3300009180 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG | Environmental | Open in IMG/M |
3300009183 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG | Environmental | Open in IMG/M |
3300009419 | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT | Environmental | Open in IMG/M |
3300010885 | northern Canada Lakes Co-assembly | Environmental | Open in IMG/M |
3300012346 | Freshwater microbial communities from Emily Creek, Ontario, Canada - S29 | Environmental | Open in IMG/M |
3300013004 | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG | Environmental | Open in IMG/M |
3300013005 | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG | Environmental | Open in IMG/M |
3300013006 | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG | Environmental | Open in IMG/M |
3300013126 (restricted) | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m | Environmental | Open in IMG/M |
3300018868 | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50 | Environmental | Open in IMG/M |
3300020141 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 | Environmental | Open in IMG/M |
3300020151 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1 | Environmental | Open in IMG/M |
3300020159 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1 | Environmental | Open in IMG/M |
3300020160 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1 | Environmental | Open in IMG/M |
3300020161 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1 | Environmental | Open in IMG/M |
3300020162 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1 | Environmental | Open in IMG/M |
3300020172 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1 | Environmental | Open in IMG/M |
3300021438 | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG | Environmental | Open in IMG/M |
3300021961 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D | Environmental | Open in IMG/M |
3300021962 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D | Environmental | Open in IMG/M |
3300021963 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D | Environmental | Open in IMG/M |
3300021964 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D | Environmental | Open in IMG/M |
3300022407 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D | Environmental | Open in IMG/M |
3300022594 | Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S1 | Environmental | Open in IMG/M |
3300024350 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8d | Environmental | Open in IMG/M |
3300027144 | Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0h | Environmental | Open in IMG/M |
3300027146 | Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_0h | Environmental | Open in IMG/M |
3300027728 (restricted) | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m | Environmental | Open in IMG/M |
3300027733 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300027734 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300027759 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300027763 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300027782 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300027793 | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes) | Environmental | Open in IMG/M |
3300027798 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes) | Environmental | Open in IMG/M |
3300027805 | Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes) | Environmental | Open in IMG/M |
3300027836 | Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes) | Environmental | Open in IMG/M |
3300027963 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300027969 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
3300027977 (restricted) | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12m | Environmental | Open in IMG/M |
3300028114 (restricted) | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_13.5m | Environmental | Open in IMG/M |
3300028581 (restricted) | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17m | Environmental | Open in IMG/M |
3300032050 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122 | Environmental | Open in IMG/M |
3300034020 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055 | Environmental | Open in IMG/M |
3300034062 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045 | Environmental | Open in IMG/M |
3300034102 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112 | Environmental | Open in IMG/M |
3300034106 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131 | Environmental | Open in IMG/M |
3300034108 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
ErSWdraft_3880240 | 2035265000 | Freshwater | MTVNQANKVNANADTFDFSAMSFTGNTVANDSRFALAA |
Draft_100297725 | 3300001605 | Hydrocarbon Resource Environments | MGSTRQAIVVNEAKLVNANADTFDFSAMSFSGNTVGGKVALAA* |
B570J40625_1003901543 | 3300002835 | Freshwater | MTLNQAKQVNAENADTFDFTAMSFTGNTVTGSSKVALAA* |
JGI25908J49247_100175144 | 3300003277 | Freshwater Lake | MTVNQAKLVNANADTYDFSAMSFTGNTVRGAANESRFALAA* |
Ga0007760_113880631 | 3300004793 | Freshwater Lake | MTVNQAKLVNANADTFDFSAMSFTGNTVRGAANESRFALAA* |
Ga0070374_100665612 | 3300005517 | Freshwater Lake | MTVNQANKVKANADTFEFGAMSFTGNTVSGKSKFALAA* |
Ga0070374_102848222 | 3300005517 | Freshwater Lake | MTVNQAKLVNANANTTEFSGFSFTGNTVRGAANEGRFALAA* |
Ga0068877_107016961 | 3300005525 | Freshwater Lake | MTVNQANKVKANADTFEFGALNFTGNTVRGAANEGRFALAA* |
Ga0068876_101850013 | 3300005527 | Freshwater Lake | MTVNQAKIVNANADTFDFSAMSFTGNTVSGKSKVALAA* |
Ga0049081_100548194 | 3300005581 | Freshwater Lentic | MTVNQANKVKANADTFDFSAMSFTGNTVRGAANESRF |
Ga0078894_1001942610 | 3300005662 | Freshwater Lake | MTVNQAFINAEENAFDFAAMSFTGNTVKGSKVAVAA* |
Ga0078894_100554938 | 3300005662 | Freshwater Lake | MTVNQANKVKANADTFEFGAMSFTGNTVSGKSKVALAA* |
Ga0078894_100573671 | 3300005662 | Freshwater Lake | MDVIQAKNVNANADTFDFSAMSFSGNTVRGEVALAA* |
Ga0078894_101410943 | 3300005662 | Freshwater Lake | MTVNQANKVKANADTFEFGAMSFTGNTVSGTSRFALAA* |
Ga0078894_104015303 | 3300005662 | Freshwater Lake | NVNATADTFDFSAMSFTGNTVRGAANESRFALAA* |
Ga0078894_104700361 | 3300005662 | Freshwater Lake | MTVNQAKNVNANADTFDFSAMSFTGNSVSGKSKVALAA* |
Ga0079301_10832752 | 3300006639 | Deep Subsurface | MTVNQANKVKANADTFDFSAMSFTGNTVRGAANESRFALAA* |
Ga0102893_10705141 | 3300008052 | Estuarine | MTVNQAKLVNANADTFDFSAMSFTGNTVRGAANESR |
Ga0114346_12693902 | 3300008113 | Freshwater, Plankton | MTVNQANKVKANADTFDFSAMSFTGNTVSGKSKVALAA* |
Ga0114350_10198828 | 3300008116 | Freshwater, Plankton | MTVNQANKVKANADTFEFGAMSLTGNTVSGKSKVALAA* |
Ga0114355_10231558 | 3300008120 | Freshwater, Plankton | MTVNQAKLVNAKADTFDFSAMSFTGNTVRGAANESRFALAA* |
Ga0114973_103487323 | 3300009068 | Freshwater Lake | MTVNQAKLVNANADTFDFSAMSFTGNTVRGAANESRFAL |
Ga0114980_104848642 | 3300009152 | Freshwater Lake | MTVNQANKVNAKADTFDFSAMSFTGNSVTGASKFALAA* |
Ga0114968_100919782 | 3300009155 | Freshwater Lake | MTVNQAKLVNANADTFDFSAMSFTGNSVSGKSKVALAA* |
Ga0114977_100297952 | 3300009158 | Freshwater Lake | MTANQANKVNANADTFEFSGFNFTGNTVRGAANEGRFALAA* |
Ga0114977_102696401 | 3300009158 | Freshwater Lake | MTVNQAKIVNATADTFDFSAMSFTGNTVRGAANESRFALAA* |
Ga0114977_104437422 | 3300009158 | Freshwater Lake | ANKVNANADTFEFSGFNFTGNTVRGAANEGRFALAA* |
Ga0114978_100309341 | 3300009159 | Freshwater Lake | MTANQANKVNANADTFEFSGFNFTGNTVRGAANEGR |
Ga0114978_100518366 | 3300009159 | Freshwater Lake | MTVNQANKVKANADTFDFSAMSFTGNTVRGAANDSRFALAA* |
Ga0114978_100882583 | 3300009159 | Freshwater Lake | MTVNQANQVNAKADTFDFSAMSFTGNSVTGASKVALAA* |
Ga0114981_102579651 | 3300009160 | Freshwater Lake | NQAKLVNANADTFDFSAMSFTGNTVRGAANESRFALAA* |
Ga0114975_100213967 | 3300009164 | Freshwater Lake | MTVNQAKLVNANADTFEFSGFNFTGNTVRGAANEGRFALAA* |
Ga0114975_100993954 | 3300009164 | Freshwater Lake | MTVNQANKVKANADTFEFSAMSFTGNTVTGKSKVALAA* |
Ga0114975_101000963 | 3300009164 | Freshwater Lake | MTVNQANKVKANADTNDFTAMSFTGNTVSGKSKVALAA* |
Ga0114975_101776531 | 3300009164 | Freshwater Lake | MTVNQAKIVNANANTNDFTAMSFTGNTVRGAANESRFALAA* |
Ga0114979_104266172 | 3300009180 | Freshwater Lake | IQAKIVNANADTFDFTAMSFTGNSVTGKSKTALAA* |
Ga0114974_1000062631 | 3300009183 | Freshwater Lake | MTVNQAKIVNANADTFDFTAMSFTGNTVRGAANESKFALAA* |
Ga0114982_11248252 | 3300009419 | Deep Subsurface | MTVNQAKLVNANADTFDFSAMSFTGNTVSGKSKVALAA* |
Ga0133913_101212699 | 3300010885 | Freshwater Lake | MTVNQAKIVNANANTTDFTAMSFTGNSVTGKSKTALAA* |
Ga0133913_110443221 | 3300010885 | Freshwater Lake | QANKVNANADTFEFSGFNFTGNTVRGAANEGRFALAA* |
Ga0157141_10495821 | 3300012346 | Freshwater | MTVNQANKVNANADTFDFSAMSFSGNTVGGKVALAA* |
Ga0164293_100545654 | 3300013004 | Freshwater | MTVNQAKTVNAEKADTFDFTAMSFTGNTVSGKSKVALAA* |
Ga0164293_102124972 | 3300013004 | Freshwater | MDVIQAKTVNAEKADTFDFTAMSFTGNTVRGAANVSRFALAA* |
Ga0164292_100261544 | 3300013005 | Freshwater | MTLNQAKQVNAENADTFDFTAMSFTGNTVSGKSKVALAA* |
Ga0164294_100988104 | 3300013006 | Freshwater | MTVNQAKNVNATADTFDFSAMSFTGNTVRGAANESRFALAA* |
(restricted) Ga0172367_100033276 | 3300013126 | Freshwater | MTLNQANKVKANADTFDFTAMSFTGNTVANDSRFALAA* |
Ga0187844_101081673 | 3300018868 | Freshwater | MTVNQAKNVNATADTFDFSAMSFTGNTVRGAANESRFALAA |
Ga0211732_11370992 | 3300020141 | Freshwater | MDVIQAKTVNAEKADTFDFTAMSFTGNTVRGAANVSRFALAA |
Ga0211732_12925971 | 3300020141 | Freshwater | MTVNQANKVNAKADTFDFSAMSFTGNSVTGASKFALAA |
Ga0211732_14995561 | 3300020141 | Freshwater | MTVNQAKLVNANADTFDFSAMSFTGNTVRGAANESRFALAA |
Ga0211736_102320882 | 3300020151 | Freshwater | MTLNQAKQVNAEKADTFDFTAMSFTGNTVTGSSKIAFAA |
Ga0211736_103223871 | 3300020151 | Freshwater | MTVNQANKVKANADTFEFGAMSFTGNTVRGAANEGRFALAA |
Ga0211736_106715601 | 3300020151 | Freshwater | MTVNQAKIVNANADTFDFSAMSFTGNSVTGASKVALAA |
Ga0211736_108495692 | 3300020151 | Freshwater | AMTVNQANKVKANADTFDFSAMSFTGNTVSGKSKVALAA |
Ga0211734_106530251 | 3300020159 | Freshwater | MTVNQAKIVNANADTTEFSGFSFTGNTVRGAANEGRFALAA |
Ga0211734_110280885 | 3300020159 | Freshwater | MTVNQANKVKANADTFDFSAMSFTGNTVSGKSKVALAA |
Ga0211733_107777322 | 3300020160 | Freshwater | MTVNQAKLVNANADTFDFSAMSFTGNTVRGAANDSRFALAA |
Ga0211733_109068682 | 3300020160 | Freshwater | MTVNQASKVKANADTFEFSAFGFTGNTVRGAANEGRFALAA |
Ga0211726_100080351 | 3300020161 | Freshwater | AKLVNANADTFDFSAMSFTGNTVRGAANESRFALAA |
Ga0211726_100326582 | 3300020161 | Freshwater | MDVIQAKKVKANADTFDFTAMSFTGNTVSGKSKVAVAA |
Ga0211726_103405601 | 3300020161 | Freshwater | MTVNQANQVNANADTFDFSAMSFTGNSVTGASKVALAA |
Ga0211735_109359851 | 3300020162 | Freshwater | NQAKLVNANADTFDFSAMSFTGNSVTGASKFALAA |
Ga0211735_111293161 | 3300020162 | Freshwater | MTVNQAKLVNANADTFDFSAMSFTGNSVTGASKFAL |
Ga0211735_111385581 | 3300020162 | Freshwater | REAMDVIQAKKVKANADTFDFTAMSFTGNTVSGTSKVAVAA |
Ga0211729_101718492 | 3300020172 | Freshwater | MDVIQAKKVKANADTFDFTAMSFTGNTVSGKSKVALAA |
Ga0213920_10508311 | 3300021438 | Freshwater | MTVNQAKIVNANADTFDFGAMSFTGNSVSGKSKVALAA |
Ga0222714_101791641 | 3300021961 | Estuarine Water | MTVNQAKNVNANADTFDFSAMSFTGNSVSGKSKVALAA |
Ga0222713_103589772 | 3300021962 | Estuarine Water | MTVNQANKVKANADTFEFGAMSFTGNSVTGASRFALAA |
Ga0222712_104840901 | 3300021963 | Estuarine Water | MTVNQAKLVNANADTFDFSAMSFTGNTVSGKSKVALAA |
Ga0222719_103416202 | 3300021964 | Estuarine Water | TGQATDLISAKQVNAEDADTFEFGALSFTGNTVGGEVALAA |
Ga0181351_11221223 | 3300022407 | Freshwater Lake | MTVNQAKIVNANADTFDFSAMSFSGNTVGGKVALAA |
Ga0236340_100251810 | 3300022594 | Freshwater | MTVNQANNVNANADTFEFGAMSFTGNSVAGKSKVALAA |
Ga0255167_10250333 | 3300024350 | Freshwater | MTLNQANKVIANDDSFDVGAISFTGNTVRGAANESRFALAA |
Ga0255102_10436431 | 3300027144 | Freshwater | MTVNQAKLVNANADTFEFGAMSFTGNTVSGKSKFALAA |
Ga0255104_10402352 | 3300027146 | Freshwater | NQANKVKANADTFDFSAMSFTGNTVRGAANESRFALAA |
(restricted) Ga0247836_10835862 | 3300027728 | Freshwater | MTVNQANKVKANADTFEFGALNFTGNTVRGAANEGRFALAA |
Ga0209297_12025301 | 3300027733 | Freshwater Lake | QAKLVNANADTFDFSAMSFTGNTVRGAANESRFALAA |
Ga0209297_13178451 | 3300027733 | Freshwater Lake | MTANQANKVNANADTFEFSGFNFTGNTVRGAANEGRFALAA |
Ga0209087_13300872 | 3300027734 | Freshwater Lake | MTVNQANKVKANADTNDFTAMSFTGNTVSGKSKVALAA |
Ga0209296_10015672 | 3300027759 | Freshwater Lake | MTVNQAKIVNANADTFDFTAMSFTGNTVRGAANESKFALAA |
Ga0209296_101259410 | 3300027759 | Freshwater Lake | MTVNQAKIVNANANTTDFTAMSFTGNSVTGKSKTALAA |
Ga0209296_10895483 | 3300027759 | Freshwater Lake | MTVNQANKVKANADTFEFSAMSFTGNTVTGKSKVALAA |
Ga0209088_102163422 | 3300027763 | Freshwater Lake | MTVNQANKVKANADTFDFSAMSFTGNTVRGAANDSRFALAA |
Ga0209500_100250352 | 3300027782 | Freshwater Lake | MTVNQANQVNAKADTFDFSAMSFTGNSVTGASKVALAA |
Ga0209972_100405575 | 3300027793 | Freshwater Lake | MTVNQANKVKANADTFDFSAMSFTGNTVRGAANESRFALAA |
Ga0209353_100662335 | 3300027798 | Freshwater Lake | AMTVNQANKVKANADTFEFGAMSFTGNTVSGKSKFALAA |
Ga0209229_101942942 | 3300027805 | Freshwater And Sediment | MTVNQAKLVNANADTFEFSAMSFTGNTVSGKSKFALAA |
Ga0209230_100237976 | 3300027836 | Freshwater And Sediment | MTVNQAKLVNANADTFDLSAMSFTGNTVRGAANESRFAL |
Ga0209400_11240713 | 3300027963 | Freshwater Lake | MTVNQAKLVNATADTFDFSAMSFTGNTVRGAANESRFALAA |
Ga0209400_11372702 | 3300027963 | Freshwater Lake | MTVNQAKLVNANADTFDFSAMSFTGNSVSGKSKVALAA |
Ga0209191_10536081 | 3300027969 | Freshwater Lake | NKVNANADTFEFSGFNFTGNTVRGAANEGRFALAA |
Ga0209191_10652174 | 3300027969 | Freshwater Lake | MTVNQAKLVNANADTFEFSGFNFTGNTVRGAANEGRFALAA |
(restricted) Ga0247834_11590792 | 3300027977 | Freshwater | MTVNQAKQVNAEKADTFDFTAMSFTGNTVSGKSKVAVAA |
(restricted) Ga0247835_10129971 | 3300028114 | Freshwater | AMTVNQANKVKANADTFEFGALNFTGNTVRGAANEGRFALAA |
(restricted) Ga0247840_100843811 | 3300028581 | Freshwater | MTVNQAKLVNANANTTEFSGFSFTGNTVRGAANEGRFALA |
Ga0315906_103629593 | 3300032050 | Freshwater | NQAKLVNANADTFDFSAMSFTGNTVSGKSKVALAA |
Ga0335002_0474510_490_615 | 3300034020 | Freshwater | MTVNQAKHVNANANTFDFSAMSFTGNTVRGAANESRFALAA |
Ga0334995_0301302_50_169 | 3300034062 | Freshwater | MTLNQAKQVNAENADTFDFTAMSFTGNTVSGKSKVALAA |
Ga0335029_0261263_1004_1111 | 3300034102 | Freshwater | INVNAKADTFDFSAMSFTGNTVRGAANESRFALAA |
Ga0335029_0322794_774_893 | 3300034102 | Freshwater | MTVNQAKTVNAEKADTFDFTAMSFTGNTVTGSSKVAFAA |
Ga0335036_0553113_585_707 | 3300034106 | Freshwater | PLIKQINVNAKADTFDFSAMSFTGNTVRGAANESRFALAA |
Ga0335050_0118684_1335_1460 | 3300034108 | Freshwater | MTVNQAKHVNATADTFDFSAMSFTGNTVRGAANESRFALAA |
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