NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F101066

Metagenome Family F101066

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101066
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 53 residues
Representative Sequence MSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQLTTAPTVH
Number of Associated Samples 56
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 63.11 %
% of genes near scaffold ends (potentially truncated) 28.43 %
% of genes from short scaffolds (< 2000 bps) 76.47 %
Associated GOLD sequencing projects 49
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (43.137 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(42.157 % of family members)
Environment Ontology (ENVO) Unclassified
(51.961 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(78.431 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.73%    β-sheet: 12.20%    Coil/Unstructured: 67.07%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF02195ParBc 67.65
PF03237Terminase_6N 3.92
PF12851Tet_JBP 2.94
PF07120DUF1376 1.96
PF13238AAA_18 0.98
PF05133Phage_prot_Gp6 0.98
PF01507PAPS_reduct 0.98
PF04404ERF 0.98
PF12705PDDEXK_1 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG3756Uncharacterized conserved protein YdaU, DUF1376 familyFunction unknown [S] 1.96

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms56.86 %
UnclassifiedrootN/A43.14 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10021350All Organisms → Viruses → Predicted Viral3154Open in IMG/M
3300000116|DelMOSpr2010_c10032589All Organisms → Viruses → Predicted Viral2421Open in IMG/M
3300000116|DelMOSpr2010_c10058151All Organisms → Viruses → Predicted Viral1643Open in IMG/M
3300004097|Ga0055584_100231208All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium1884Open in IMG/M
3300005512|Ga0074648_1004097Not Available11861Open in IMG/M
3300005512|Ga0074648_1011463All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria5767Open in IMG/M
3300005512|Ga0074648_1013483All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria5121Open in IMG/M
3300005512|Ga0074648_1060341All Organisms → cellular organisms → Bacteria1562Open in IMG/M
3300006025|Ga0075474_10045658All Organisms → Viruses → Predicted Viral1493Open in IMG/M
3300006025|Ga0075474_10254731All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria527Open in IMG/M
3300006027|Ga0075462_10042667All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1450Open in IMG/M
3300006027|Ga0075462_10068402All Organisms → Viruses → Predicted Viral1118Open in IMG/M
3300006637|Ga0075461_10061316Not Available1209Open in IMG/M
3300006802|Ga0070749_10029501All Organisms → cellular organisms → Bacteria3434Open in IMG/M
3300006802|Ga0070749_10072446All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2065Open in IMG/M
3300006802|Ga0070749_10095678All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1760Open in IMG/M
3300006802|Ga0070749_10214827All Organisms → Viruses → Predicted Viral1098Open in IMG/M
3300006802|Ga0070749_10391016Not Available768Open in IMG/M
3300006802|Ga0070749_10767741Not Available513Open in IMG/M
3300006810|Ga0070754_10002293Not Available14229Open in IMG/M
3300006810|Ga0070754_10180390All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae994Open in IMG/M
3300006810|Ga0070754_10259084Not Available792Open in IMG/M
3300006922|Ga0098045_1082518Not Available768Open in IMG/M
3300007234|Ga0075460_10107057All Organisms → Viruses → Predicted Viral1000Open in IMG/M
3300007344|Ga0070745_1081576All Organisms → Viruses → Predicted Viral1284Open in IMG/M
3300007344|Ga0070745_1110045Not Available1070Open in IMG/M
3300007345|Ga0070752_1010515All Organisms → cellular organisms → Bacteria → Proteobacteria5003Open in IMG/M
3300007345|Ga0070752_1306103Not Available604Open in IMG/M
3300007345|Ga0070752_1379975All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria525Open in IMG/M
3300007539|Ga0099849_1047976All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1787Open in IMG/M
3300007539|Ga0099849_1261335Not Available634Open in IMG/M
3300007540|Ga0099847_1035178All Organisms → Viruses → Predicted Viral1601Open in IMG/M
3300007640|Ga0070751_1353026All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae538Open in IMG/M
3300007725|Ga0102951_1009138All Organisms → Viruses → Predicted Viral3360Open in IMG/M
3300007725|Ga0102951_1025498Not Available1845Open in IMG/M
3300007725|Ga0102951_1068672Not Available1023Open in IMG/M
3300007778|Ga0102954_1078766Not Available918Open in IMG/M
3300007778|Ga0102954_1141900All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria686Open in IMG/M
3300007960|Ga0099850_1125667Not Available1045Open in IMG/M
3300009001|Ga0102963_1118211All Organisms → Viruses → Predicted Viral1077Open in IMG/M
3300009001|Ga0102963_1247554Not Available706Open in IMG/M
3300009001|Ga0102963_1328527All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium601Open in IMG/M
3300009027|Ga0102957_1025648All Organisms → Viruses → Predicted Viral2006Open in IMG/M
3300009529|Ga0114919_10580004Not Available769Open in IMG/M
3300010300|Ga0129351_1064701All Organisms → Viruses → Predicted Viral1488Open in IMG/M
3300010368|Ga0129324_10162152All Organisms → cellular organisms → Bacteria925Open in IMG/M
3300010389|Ga0136549_10074732Not Available1661Open in IMG/M
3300010389|Ga0136549_10393060Not Available563Open in IMG/M
3300012920|Ga0160423_10283830All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1141Open in IMG/M
3300017818|Ga0181565_10107147Not Available1978Open in IMG/M
3300017951|Ga0181577_10042302All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3266Open in IMG/M
3300017963|Ga0180437_10506012All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria890Open in IMG/M
3300017967|Ga0181590_10809375Not Available623Open in IMG/M
3300017986|Ga0181569_10113498Not Available1926Open in IMG/M
3300018080|Ga0180433_10329227All Organisms → Viruses → Predicted Viral1196Open in IMG/M
3300018416|Ga0181553_10686636Not Available536Open in IMG/M
3300018416|Ga0181553_10716921Not Available522Open in IMG/M
3300018420|Ga0181563_10584971Not Available622Open in IMG/M
3300018421|Ga0181592_10449206Not Available901Open in IMG/M
3300018421|Ga0181592_10642154Not Available715Open in IMG/M
3300018421|Ga0181592_11080069Not Available513Open in IMG/M
3300020404|Ga0211659_10501771Not Available518Open in IMG/M
3300020439|Ga0211558_10022165All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3247Open in IMG/M
3300021335|Ga0213867_1049061All Organisms → Viruses → Predicted Viral1620Open in IMG/M
3300021356|Ga0213858_10037169Not Available2351Open in IMG/M
3300021356|Ga0213858_10052330All Organisms → Viruses → Predicted Viral1978Open in IMG/M
3300021356|Ga0213858_10211923All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria939Open in IMG/M
3300021364|Ga0213859_10072751Not Available1633Open in IMG/M
3300021364|Ga0213859_10150230All Organisms → cellular organisms → Bacteria1095Open in IMG/M
3300021364|Ga0213859_10316762Not Available702Open in IMG/M
3300021373|Ga0213865_10475817Not Available538Open in IMG/M
3300021425|Ga0213866_10001881Not Available15289Open in IMG/M
3300021425|Ga0213866_10145143All Organisms → Viruses → Predicted Viral1263Open in IMG/M
3300021425|Ga0213866_10165119All Organisms → Viruses → Predicted Viral1167Open in IMG/M
3300021425|Ga0213866_10237074All Organisms → cellular organisms → Bacteria934Open in IMG/M
3300021425|Ga0213866_10479481Not Available596Open in IMG/M
3300021958|Ga0222718_10003374Not Available13738Open in IMG/M
3300021958|Ga0222718_10051255All Organisms → Viruses → Predicted Viral2619Open in IMG/M
3300021959|Ga0222716_10550848Not Available639Open in IMG/M
3300021960|Ga0222715_10258314Not Available1010Open in IMG/M
3300022074|Ga0224906_1000828Not Available16238Open in IMG/M
3300022074|Ga0224906_1028162All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1945Open in IMG/M
3300022929|Ga0255752_10370677Not Available576Open in IMG/M
3300025630|Ga0208004_1019559All Organisms → Viruses → Predicted Viral2123Open in IMG/M
3300025630|Ga0208004_1027416Not Available1703Open in IMG/M
3300025655|Ga0208795_1017538All Organisms → Viruses → Predicted Viral2397Open in IMG/M
3300025671|Ga0208898_1025642All Organisms → Viruses → Predicted Viral2500Open in IMG/M
3300025671|Ga0208898_1053357All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Halanaerobiales → Halanaerobiaceae → Halarsenatibacter → Halarsenatibacter silvermanii1451Open in IMG/M
3300025671|Ga0208898_1073626All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1127Open in IMG/M
3300025671|Ga0208898_1139791All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria670Open in IMG/M
3300025759|Ga0208899_1008809All Organisms → cellular organisms → Bacteria5785Open in IMG/M
3300025769|Ga0208767_1105186All Organisms → Viruses → Predicted Viral1119Open in IMG/M
3300025853|Ga0208645_1075515All Organisms → Viruses → Predicted Viral1484Open in IMG/M
3300025853|Ga0208645_1082430Not Available1391Open in IMG/M
3300025889|Ga0208644_1033144All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3065Open in IMG/M
3300025889|Ga0208644_1074296All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1768Open in IMG/M
3300025889|Ga0208644_1089658All Organisms → Viruses → Predicted Viral1546Open in IMG/M
3300025889|Ga0208644_1311251Not Available620Open in IMG/M
3300026130|Ga0209961_1024314All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1334Open in IMG/M
3300034374|Ga0348335_008267Not Available6011Open in IMG/M
3300034374|Ga0348335_048989All Organisms → Viruses → Predicted Viral1648Open in IMG/M
3300034418|Ga0348337_106228Not Available900Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous42.16%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater12.75%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh10.78%
WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water5.88%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water3.92%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water3.92%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment3.92%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine2.94%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.96%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.96%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.96%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment1.96%
Marine Methane Seep SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment1.96%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.98%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.98%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface0.98%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006922Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaGEnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007640Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28EnvironmentalOpen in IMG/M
3300007725Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MGEnvironmentalOpen in IMG/M
3300007778Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MGEnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009027Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MGEnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010389Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsfEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017963Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaGEnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017986Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018080Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaGEnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020404Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)EnvironmentalOpen in IMG/M
3300020439Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)EnvironmentalOpen in IMG/M
3300021335Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540EnvironmentalOpen in IMG/M
3300021356Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245EnvironmentalOpen in IMG/M
3300021364Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021425Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300022074Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)EnvironmentalOpen in IMG/M
3300022929Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaGEnvironmentalOpen in IMG/M
3300025630Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025655Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300026130Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M
3300034418Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1002135023300000116MarineMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQLTTAPTVH*
DelMOSpr2010_1003258913300000116MarineMSEPQSYIIVENEDGTFTAYVNFGIYTSKEEAETSLDLAMKMLGMQITTAPTVH*
DelMOSpr2010_1005815153300000116MarineMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLG
Ga0055584_10023120833300004097Pelagic MarineMSQPQSYIIVDNEDGTYTAYVNFGSWTSKEEAERNLDLAMQMLGLHVNKLPTLH*
Ga0074648_100409723300005512Saline Water And SedimentMSDPQSYIIVDNEDGTFTAYVNFGSWQSKEEAEHNLDLAMRMLGMQLTKSPTVH*
Ga0074648_101146343300005512Saline Water And SedimentMSEPQSYIIVENDDGTFTAYVNFGSWSSKEEAEHNLDLAMKMLGMQINTAPTVH*
Ga0074648_101348353300005512Saline Water And SedimentMSEPQSYIIVENEDGTFTAYVNFGMFQSKEEAETSLDLAMKMLGMQINTAPTVH*
Ga0074648_106034123300005512Saline Water And SedimentMSQPQSYIIVENDDGTFTAYVNFGNWTSKEEAEHNLDLAMRMLGLQVTTAPTVH*
Ga0075474_1004565823300006025AqueousMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQITNAPTVH*
Ga0075474_1025473113300006025AqueousIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQLTTAPTVH*
Ga0075462_1004266733300006027AqueousMSQPQSYIIVENEDGTFTAYVNFGMYPSKEEAEYNLDLAMKMLGLQVTTAPTVH*
Ga0075462_1006840213300006027AqueousAMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQLTTAPTVH*
Ga0075461_1006131613300006637AqueousMSQPQSYIIVENEDGTFTAYVNFGSWTSKEEAEHNLDLAMKMLGLQVTTAPTVH*
Ga0070749_1002950143300006802AqueousMSQPQSYIIVDNEDGTYTAYVNFGIWQSKEEAEHNLDLAMQMLGLNLMKAPTVH*
Ga0070749_1007244623300006802AqueousMSNPQSYIIVENDDGTYTAYVNFGSWTTKEEAEHNLDLAMRMLGMQLTKSPTVH*
Ga0070749_1009567813300006802AqueousSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQLTTAPTVH*
Ga0070749_1021482713300006802AqueousSAMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQLTTAPTVH*
Ga0070749_1039101613300006802AqueousMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQITTSPTIH*
Ga0070749_1076774123300006802AqueousMSQPQSYIIVENEDGTFTAYVNFGMFQTKEEAETSLDLAMKMLGLQITTAPTIH*
Ga0070754_10002293233300006810AqueousMSQPQSYMIVENDDGTFTAYVNFGMFPSKEEAEHSLELAMQMLGMELHKTPTVH*
Ga0070754_1018039013300006810AqueousMSQPQSYIIVENEDGTFTAYVNFGMYQSKEEAETSLDLAMKMLGLQITTSPTIH*KIRVFSV*
Ga0070754_1025908423300006810AqueousMSQPQSYIIVENEDGTFTAYVNFGMYQSKEEAETSLDLAMKMLGMQITTSPTIH*
Ga0098045_108251833300006922MarineMSQPQSYIIVDNEDGTFTAYVNFGSWASKEEAERNLDLAMQMLGLHVNDLPTLH*
Ga0075460_1010705723300007234AqueousMSQPQSYIIVENEDGTFTAYVNFGIYTSKEESEVSLDLAMKMLGMQITNAPTVH*
Ga0070745_108157613300007344AqueousQSYIIVENEDGTFTAYVNFGIYTSKEEAEINLDLAMKMLGMQLTTAPTVH*
Ga0070745_111004513300007344AqueousMSQPQSYIIVENEDGTFTAYVNFGMYQSKEEAETSLDLAMKMLGLQITTSPTIH*
Ga0070752_101051533300007345AqueousMIVENDDGTFTAYVNFGMFPSKEEAEHSLELAMQMLGMELHKTPTVH*
Ga0070752_130610323300007345AqueousMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAETSLDLAMKMLGMQITTAPTVH*
Ga0070752_137997523300007345AqueousVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQLTTAPTVH*
Ga0099849_104797623300007539AqueousMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQLTTVPTVH*
Ga0099849_126133523300007539AqueousMSQPQSYIIVDNEDGTFTAYVNFGVWQSKEEAEYNLNLAMQMLGLNITKTPTVH*
Ga0099847_103517833300007540AqueousMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEINLDLAMKMLGMQLTTAPTVH*
Ga0070751_135302613300007640AqueousMSQPQSYIIVENEDGTFTAYVNFGMFQTKEEAETSLDLAMKMLGMEITTAPTVH*
Ga0102951_100913833300007725WaterMSQPQSYIIVDNEDGTFTAYVNFGVYADKEEAERSLDLAMQMLGLKITTEPTVH*
Ga0102951_102549843300007725WaterMQQPQSYIIVENDDGTFTAYVNFGSWTSKEEAEHNLDLAMKMLGLQVTTAPTVH*
Ga0102951_106867223300007725WaterLKKKNSKSDMSQPQSYIIVDNEDGTFTAYVNFGLFTSKEEAEHSIELAMQMLGMELNKTPTVH*
Ga0102954_107876623300007778WaterMSQPQSYIIVDNEDGTFTAYVNFGLYTSKEEAEHSLELAMQMLGMELNKTPTVH*
Ga0102954_114190013300007778WaterVENDDGTFTAYVNFGSWTSKEEAEHNLDLAMKMLGLQVTTAPTVH*
Ga0099850_112566713300007960AqueousMVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQITSAPTVH*
Ga0102963_111821133300009001Pond WaterQSYIIVDNEDGTFTAYVNFGLYTSKEEAEHSLELAMQMLGMQLTTTPTIH*
Ga0102963_124755413300009001Pond WaterQSYIIVDNEDGTFTAYVNFGLYTSKEEAEHSLELAMQMLGMELNKTPTVH*
Ga0102963_132852723300009001Pond WaterMSQPQSYIIVDNEDGTFTAYVNFGVFTSKDEAERSLELAMQMLGLQVTKVPTVH*
Ga0102957_102564833300009027Pond WaterLKKKNSKSDMSQPQSYIIVDNEDGTFTAYVNFGLYTSKEEAEHSIELAMQMLGMELNKTPTVH*
Ga0114919_1058000433300009529Deep SubsurfaceMSHPQSYIIVENDDGTFTAYVNFGNWTSKEEAEHNLDLAMRMLGLQVTTAPTVH*
Ga0129351_106470113300010300Freshwater To Marine Saline GradientMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQITSAPTVH*
Ga0129324_1016215233300010368Freshwater To Marine Saline GradientYIIVENEDGTFTAYVNFGIYTSKEEAEINLDLAMKMLGMQLTTAPTVH*
Ga0136549_1007473263300010389Marine Methane Seep SedimentMSQPQSYIIVDNEDGTFTAYVNFGLFTSKEEAEHSIELAMQMLGMELNKTPTVH*
Ga0136549_1039306023300010389Marine Methane Seep SedimentLNCYYEKSAMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQLTTAPTVH*
Ga0160423_1028383033300012920Surface SeawaterMSQPQSYIIVENDDGSFTAYVNFGNYISKEEAEQSLTLAMKMLGLQVTTNPTIH*
Ga0181565_1010714743300017818Salt MarshLNYQYEKTVMSQPQSYIIVENDDGSFTAYVNFGNYLSKEEAEQSLNLAMKMLGLQITTTPTIH
Ga0181577_1004230263300017951Salt MarshMSQPQSYIIVENDDGSFTAYVNFGNYLSKEEAEQSLNLAMKMLGLQITTTPTIH
Ga0180437_1050601213300017963Hypersaline Lake SedimentMQQPQSYIIVENDDGTFTAYVNFGSWTSKEEAEHNLDLAMKMLGLQVTTAPTVH
Ga0181590_1080937523300017967Salt MarshMSQPQSYIIVDNEDGTFTAYVNFGVFTSKDEAERSLDLAMQMLGLQVTKPPTVH
Ga0181569_1011349813300017986Salt MarshMSQPQSYIIVENDDGSFTAYVNFGNYLTKEEAEQSLNLAMKMLGLQITTAPTIH
Ga0180433_1032922733300018080Hypersaline Lake SedimentMSQPQSYIIVENEDGTFTAYVNFGMFQTKEEAETSLDLAMKMLGLQITTAPTIH
Ga0181553_1068663613300018416Salt MarshHLNYQYEKTVMSQPQSYIIVENDDGSFTAYVNFGNYISKEEAEQSLNLAMKMLGLQITTTPTIH
Ga0181553_1071692113300018416Salt MarshMSQPQSYIIVENDDGSFTAYVNFGNYLSKEEAEQSLNLAMKMLGLQITTTPTI
Ga0181563_1058497133300018420Salt MarshMSQPQSYIIVDNEDGTFTAYVNFGVFTSKDEAERSLDLAMQMLG
Ga0181592_1044920633300018421Salt MarshMSQPQSYIIVENDDGSFTAYVNFGNYISKEEAEQSLNLAMKMLGLQITTTPTIH
Ga0181592_1064215423300018421Salt MarshMSQPQSYIIVDNEDGTFTAYVNFGVWQSKEEAEYNLNLAMQMLGLNITKTPTVH
Ga0181592_1108006923300018421Salt MarshMSQPQSYIIVENEDGTFTAYVNFGVFTDKEEAERSLDLAMQMLGLKITTAPTVH
Ga0211659_1050177123300020404MarineMSQPQSYIIVENDDGTFTAYVNFGNYISKEEAEQSLTLAMKMLGLQVTTNPTIH
Ga0211558_1002216563300020439MarineMSQPQSYIIVENDDGSFTAYVNFGNYISKEEAEQSLSLAMKMLGLQVTTTPTIH
Ga0213867_104906143300021335SeawaterMSQPQSYIIVENEDGTFTAYVNFGMYQSKEEAETSLDLAMKMLGMQITTSPTIH
Ga0213858_1003716933300021356SeawaterMSNPQSYIIVENDDGTFTAYVNFGSWSSKEEAEHNLDLAMKMLGMQLTKSPTVH
Ga0213858_1005233013300021356SeawaterMSQPQSYIIVENDDGTFTAYVNFGSWSSKEEAEHNLDLAMKMLGMQLTTTPTIH
Ga0213858_1021192323300021356SeawaterMSQPQSYIIVENDDGTFTAYVNFGSWSSKEEAEHNLDLAMQMLGMQLTTTPTIH
Ga0213859_1007275113300021364SeawaterVENDDGSFTAYVNFGNYLSKEEAEQSLNLAMKMLGLQITTTPTIH
Ga0213859_1015023033300021364SeawaterMSQPQSYIIVENDDGSFTAYVNFGNYISKEEAEYSLDLAMKMLGLQLTSAPTVH
Ga0213859_1031676233300021364SeawaterQLHLNYQYEKTVMSQPQSYIIVENDDGSFTAYVNFGNYLSKEEAEQSLNLAMKMLGLQLTTTPTIH
Ga0213865_1047581733300021373SeawaterMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAETSLDLAMKMLGMQ
Ga0213866_1000188173300021425SeawaterMSNPQSYIIVENDDGTYTAYVNFGSWTTKEEAEHNLDLAMRMLGMQLTKSPTVH
Ga0213866_1014514343300021425SeawaterMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAETSLDLAMKMLGMEITTAPTVH
Ga0213866_1016511913300021425SeawaterMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAETSLDLAMKMLGMEITT
Ga0213866_1023707433300021425SeawaterMSQPQSYIIVDNEDGTFTAYVNFGNFASKHEAETSLELAMQMLGLQVTKSPTVH
Ga0213866_1047948123300021425SeawaterMSQPQSYIIVENDDGSFTAYVNFGNYLSKEEAEQSLNLAMNMLGLQITTTPTIH
Ga0222718_10003374303300021958Estuarine WaterMSQPQSYIIVDNEDGTFTAYVNFGSWQSKEEAEYNLDLAMQMLGLNITKTPTVH
Ga0222718_1005125553300021958Estuarine WaterMSQPQSYIIVDNEDGTFTAYVNFGLYTSKEEAEHSLELAMQMLGMELNKTPTVH
Ga0222716_1055084813300021959Estuarine WaterMSQPQSYIIVDNEDGTFTAYVNFGLYTSKEEAEHSIELAMQMLGMELNKTPTVH
Ga0222715_1025831423300021960Estuarine WaterMSQPQSYIIVDNEDGTFTAYVNFGLFTSKEEAEHSIELAMQMLGMELNKTPTVH
Ga0224906_1000828233300022074SeawaterMSQPQSYIIVDNEDGTYTAYVNFGSWASKEEAERNLDLAMQMLGLHVNKLPTLH
Ga0224906_102816213300022074SeawaterSYIIVDNEDGTYTAYVNFGSWASKEEAERNLDLAMQMLGLHVNKLPTLH
Ga0255752_1037067733300022929Salt MarshMSQPQSYIIVDNEDGTFTAYVNFGVFTSKDEAERSLDLAMQMLGLQVTKPPT
Ga0208004_101955923300025630AqueousMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQLTTAPTVH
Ga0208004_102741613300025630AqueousSQPQSYIIVENEDGTFTAYVNFGSWTSKEEAEHNLDLAMKMLGLQVTTAPTVH
Ga0208795_101753833300025655AqueousMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQLTTVPTVH
Ga0208898_102564223300025671AqueousMSQPQSYIIVENEDGTFTAYVNFGMYQSKEEAETSLDLAMKMLGLQITTSPTIH
Ga0208898_105335723300025671AqueousMSEPQSYIIVENEDGTFTAYVNFGIYTSKEEAETSLDLAMKMLGMQITTAPTVH
Ga0208898_107362633300025671AqueousMSNPQSYIIVENDDGTYTAYVNFGSWTTKEEAEHNLDLAMQMLGMQLTKSPTVH
Ga0208898_113979123300025671AqueousMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQITNAPTVH
Ga0208899_100880973300025759AqueousMSQPQSYIIVENEDGTFTAYVNFGMYPSKEEAEYNLDLAMKMLGLQVTTAPTVH
Ga0208767_110518613300025769AqueousCYYEKSAMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQLTTAPTV
Ga0208645_107551513300025853AqueousAQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQLTTAPTVH
Ga0208645_108243013300025853AqueousMSQPQSYMIVENDDGTFTAYVNFGMFPSKEEAEHSLELAMQMLGME
Ga0208644_103314443300025889AqueousMSQPQSYIIVDNEDGTYTAYVNFGIWQSKEEAEHNLDLAMQMLGLNLMKAPTVH
Ga0208644_107429613300025889AqueousQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQLTTAPTVH
Ga0208644_108965813300025889AqueousQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQITNAPTVH
Ga0208644_131125113300025889AqueousMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAEVSLDLAMKMLGMQ
Ga0209961_102431423300026130WaterMSQPQSYIIVDNEDGTFTAYVNFGVYADKEEAERSLDLAMQMLGLKITTEPTVH
Ga0348335_008267_5769_59123300034374AqueousMIVENDDGTFTAYVNFGMFPSKEEAEHSLELAMQMLGMELHKTPTVH
Ga0348335_048989_1213_13773300034374AqueousMSQPQSYIIVENEDGTFTAYVNFGIYTSKEEAETSLELAMKMLGMQITTAPTVH
Ga0348337_106228_3_1403300034418AqueousMSNPQSYIIVENDDGTYTAYVNFGSWTTKEEAEHNLDLAMRMLGMQ

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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