NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101087

Metagenome / Metatranscriptome Family F101087

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101087
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 40 residues
Representative Sequence MIDNKEKHYLKACKSDFKCGNYFYGPKYQYCEQCRAKDMC
Number of Associated Samples 81
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 44.12 %
% of genes near scaffold ends (potentially truncated) 34.31 %
% of genes from short scaffolds (< 2000 bps) 44.12 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction Yes
3D model pTM-score0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (56.863 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Strait → Unclassified → Seawater
(13.725 % of family members)
Environment Ontology (ENVO) Unclassified
(66.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(92.157 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54
1DelMOSum2011_100182493
2DelMOSum2011_101118062
3DelMOSpr2010_100040041
4DelMOSpr2010_100073745
5DelMOSpr2010_100114514
6DelMOSpr2010_100898182
7DelMOWin2010_101323091
8DelMOWin2010_102149762
9JGI20151J14362_100237262
10JGI20158J14315_100118253
11GOS2250_10291403
12GOS2243_10719094
13Ga0073579_11743024
14Ga0101444_1178914
15Ga0098048_100107115
16Ga0098048_10095293
17Ga0098048_10103932
18Ga0098055_100035931
19Ga0098055_10325872
20Ga0075476_102656071
21Ga0098045_10528703
22Ga0098050_11387841
23Ga0075460_100111453
24Ga0099849_10124422
25Ga0102948_10345332
26Ga0070751_10093603
27Ga0105746_13131742
28Ga0105748_101290981
29Ga0102960_10395891
30Ga0102963_10218151
31Ga0102957_10455912
32Ga0102854_10154752
33Ga0115552_14178642
34Ga0115554_12545181
35Ga0115568_101164411
36Ga0115011_100060203
37Ga0163110_107989192
38Ga0163179_100400573
39Ga0163111_100553812
40Ga0181391_10003393
41Ga0181391_10084703
42Ga0181412_10016532
43Ga0181399_11462251
44Ga0181389_10016982
45Ga0181400_10545011
46Ga0181407_11438492
47Ga0181411_10020051
48Ga0181420_10055302
49Ga0181422_12016091
50Ga0187217_10045641
51Ga0181425_12737541
52Ga0181394_10343083
53Ga0181394_10949861
54Ga0181580_100072457
55Ga0181581_100027645
56Ga0181590_100661172
57Ga0181590_109876192
58Ga0181564_105642952
59Ga0206124_100755701
60Ga0211654_10613912
61Ga0211605_10397841
62Ga0211594_10697762
63Ga0211652_101226702
64Ga0211705_100288603
65Ga0211644_100317391
66Ga0211581_103424912
67Ga0211708_100124912
68Ga0211576_100006263
69Ga0211576_100064144
70Ga0211576_100179553
71Ga0211558_104027582
72Ga0211643_100153153
73Ga0213858_100390002
74Ga0222718_100006795
75Ga0222718_100024182
76Ga0222718_100222113
77Ga0222716_106268723
78Ga0222719_100123573
79Ga0196899_10038382
80Ga0196899_10241692
81Ga0244775_106158601
82Ga0208791_10524371
83Ga0208298_10002741
84Ga0208298_10035473
85Ga0208298_10694732
86Ga0208793_10245093
87Ga0208162_10462722
88Ga0209305_10005448
89Ga0208547_10017433
90Ga0208547_11502191
91Ga0208644_10515823
92Ga0209631_100213861
93Ga0209631_100744303
94Ga0209929_10088243
95Ga0209929_10251313
96Ga0247588_11300531
97Ga0208671_100825792
98Ga0209404_100046123
99Ga0233450_101233741
100Ga0257114_11530552
101Ga0315330_100241132
102Ga0316202_100367473
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 7.35%    β-sheet: 2.94%    Coil/Unstructured: 89.71%
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Variant

510152025303540MIDNKEKHYLKACKSDFKCGNYFYGPKYQYCEQCRAKDMCSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.19
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
43.1%56.9%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Seawater
Marine
Surface Seawater
Marine
Microbial Mat
Aqueous
Seawater
Marine Surface Water
Estuary Water
Marine
Seawater
Estuarine
Salt Marsh
Marine
Estuarine
Estuarine Water
Pelagic Marine
Seawater
Pelagic Marine
Marine
Seawater
Pond Water
Water
13.7%9.8%5.9%12.7%4.9%3.9%3.9%7.8%13.7%4.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1001824933300000115MarineNKEKHYLKACKSDWNCGEYFYGPKYSMCKQCRDKEMC*
DelMOSum2011_1011180623300000115MarineMIDNKEKHYLKACQSDMKCGNYFYHTKYRYCEQCRAKDYC*
DelMOSpr2010_1000400413300000116MarineDNKEKHYLKACKSDWNCGEYFYGPKYSMCKQCRDKEMC*
DelMOSpr2010_1000737453300000116MarineMIDNKEKHYLKACKSDWNCGEYFYGPKYSMCKQCRDKEMC*
DelMOSpr2010_1001145143300000116MarineMIDNKDTAILKPCESDSKCGNYFYHTKYRYCEQCRAKDMC*
DelMOSpr2010_1008981823300000116MarineMMDNKDTDILKPCESDFKCGNYFYHTKYRYCEQCRAKDVC*
DelMOWin2010_1013230913300000117MarineKDTDILKPCESDFKCGNYFYHTKYRYCEQCRAKDVC*
DelMOWin2010_1021497623300000117MarineMINTLSNKQDDILKACQSDFKCGNYFYHTKYRYCEQCRAKDYC*
JGI20151J14362_1002372623300001346Pelagic MarineMIDNKEKHYLKACKSDWNCGEYFYGPKYSMCKQCRNKEMC*
JGI20158J14315_1001182533300001355Pelagic MarineMIDNKEKHYLKSCKSDWNCGEYFYGPKYRYCKQCRDKEMC*
GOS2250_102914033300001957MarineMIDNKDKDILKPCESDFKCGNYFYHTKYRYCEQCRVKDMC*
GOS2243_107190943300001965MarineMIDNKEKNVLKACQSDFNCGNYFYHTKYRYCEICRAKDMC*
Ga0073579_117430243300005239MarineMIDNKQKDILQACQSDMKCGNYFYHTKYRYCEQCRAKDYC*
Ga0101444_11789143300006620Marine Surface WaterRIVAMIDNKQKDILKACKSEIKCGNYFYSTEYRYCEQCRSREMC*
Ga0098048_1001071153300006752MarineMIDNKDREVLKPCKSDFKCGNYFYGPKYQYCEICRAKDMC*
Ga0098048_100952933300006752MarineMIDNKEKQYLKACKSDFKCGNYFYGPKYQYCEICRAKDMC*
Ga0098048_101039323300006752MarineMIDNKEKHYLKACKSDFKCGNYFYGPKYQYCEQCRAKDMC*
Ga0098055_1000359313300006793MarineMGRGRMIDNKDREVLKPCKSDFKCGNYFYGPKYQYCEICRAKDMC*
Ga0098055_103258723300006793MarineMIDNKEKQYLKACKSDFKCGNYFYGPKYQYCEQCRAKDMC*
Ga0075476_1026560713300006867AqueousRTVVEMIDNKHSDILKPCESDLKCGNYFYHTKYRYCEQCRAKDYC*
Ga0098045_105287033300006922MarineVNNIDNKEKNYLKSCKSDFKCGNYFYHSTFRYCEQCRAKDMC*
Ga0098050_113878413300006925MarineRMIDNKDREVLKPCKSDFKCGNYFYGPKYQYCEICRAKDMC*
Ga0075460_1001114533300007234AqueousMIDNKDTDILKPCESDFKCGNYFYHTKYRYCEQCRTKDYC*
Ga0099849_101244223300007539AqueousMIDNKDTDILKPCESDFKCGNYFYHTKYKYCEQCRAKDMC*
Ga0102948_103453323300007623WaterMIDNKEKHYLKACKSDFKCGNYFYGPKYQFCEKCRAKEMC*
Ga0070751_100936033300007640AqueousMTDNKDTDILKPCESDFKCGNYFYHTKYRYCEQCRAKDVC*
Ga0105746_131317423300007973Estuary WaterMGRGIMIDNKEKHYLKACKSDFKCGNYFYGPKYQYCEQCRAKDMC*
Ga0105748_1012909813300007992Estuary WaterMIDNKEKHYLKACKSDFKCGNYFYGPKYQYCEICRAK
Ga0102960_103958913300009000Pond WaterMVDNKQKDYLKACKSDFKCGNYFYGPDYRYCEQCRTKDMC*
Ga0102963_102181513300009001Pond WaterNKQKDYLKACKSDFKCGNYFYGPDYRYCEQCRTKDMC*
Ga0102957_104559123300009027Pond WaterMVDNKEKHYLKACKSDWNCGEYFYGPQYNMCKQCRTKEMC*
Ga0102854_101547523300009058EstuarineMIDNKEKHYLKACKSDWNCGEYFYGPQYKYCKKCRAKEMC*
Ga0115552_141786423300009077Pelagic MarineAMVDNKEKHYLKACKSDWNCGEYFYGPQYSMCKQCRDKEMC*
Ga0115554_125451813300009472Pelagic MarineIMIDNKEKHYLKACKSDWNCGEYFYGPKYSMCKQCRDKEMC*
Ga0115568_1011644113300009498Pelagic MarineIVAMVDNKEKHYLKACKSDWNCGEYFYGPQYSMCKQCRDKEMC*
Ga0115011_1000602033300009593MarineMIDNKDTDILKPCESEIKCGNYFYSPIYRYCEQCRVKDMC*
Ga0163110_1079891923300012928Surface SeawaterMGRRRMIDNKEKKFLKACQSDFACGNYFYHTKYRYCEICRTKDWC*
Ga0163179_1004005733300012953SeawaterMISTLSNKQDDILKSCESEFKCGNYFYHPKYRYCELCRAKDWC*
Ga0163111_1005538123300012954Surface SeawaterMIDNKDKDILKPCESDFKCGNYFYHSKYRYCEQCRAKDMC*
Ga0181391_100033933300017713SeawaterMEEAVVLDNKEKHYLKACKSDWDCGEYFYGPKYQYCRKCRDKDMC
Ga0181391_100847033300017713SeawaterMIDNKEKHYLKACKSDFKCGNYFYGPKYQYCEKCRAKDMC
Ga0181412_100165323300017714SeawaterMIDNKEKHYLKACKSDWNCGEYFYGPQYSMCKQCRDKEMC
Ga0181399_114622513300017742SeawaterXMGRRVMIDNKDKEVLKPCKSDFKCGNYFYGPKYQYCEKCRAKDMC
Ga0181389_100169823300017746SeawaterMGRGRMIDNKEKHYLKSCKSDWNCGEYFYGPQYSMCKKCRDKEMC
Ga0181400_105450113300017752SeawaterKEKHYLKACKSDFKCGNYFYGPEYRYCKQCRAKDMC
Ga0181407_114384923300017753SeawaterMIDNKEKSYLKSCESDWDCGNYFYGPKYKYCEQCRAKDMC
Ga0181411_100200513300017755SeawaterIDNKEKHYLKACKSDWNCGEYFYGPQYSMCKQCRDKEMC
Ga0181420_100553023300017757SeawaterMLDNKEKHYLKACKSDWNCGEYFYGPQYSMCKQCRDKEMC
Ga0181422_120160913300017762SeawaterDNKEKHYLKACKSDWDCGEYFYGPKYQYCRKCRDKDMC
Ga0187217_100456413300017770SeawaterMDIKMIDNKEKHYLKACKSDFKCGNYFYGPKYQYCEKCRAKDMC
Ga0181425_127375413300017771SeawaterDKEVLKPCKSDFKCGNYFYGPKYKYCEQCRAKDMC
Ga0181394_103430833300017776SeawaterDNKEKHYLKACKSDWNCGEYFYGPQYSMCKQCRDKEMC
Ga0181394_109498613300017776SeawaterDKEVLKPCKSDFKCGNYFYGPEYRYCKQCRAKDMC
Ga0181580_1000724573300017956Salt MarshMIDNKYTDILKPCESDFKCGNYFYHTKYRYCEQCRAKDVC
Ga0181581_1000276453300017962Salt MarshMIDNKYTDILKPCESDFKCGNYFYHTKYRYCEQCRAKDIC
Ga0181590_1006611723300017967Salt MarshMMSNKDTDILKPCESDFKCGNYFYHTKYRYCEQCRTKDYC
Ga0181590_1098761923300017967Salt MarshMIDNKDTDILKPCESDFKCGNYFYHTKYRYCEQCRAKDMC
Ga0181564_1056429523300018876Salt MarshMIDNKDTDILKPCESDFKCGNYFYHTKYRYCEQCRTKDYC
Ga0206124_1007557013300020175SeawaterMVDNKEKHYLKACKSDWNCGEYFYGPKYRYCKQCRDKEMC
Ga0211654_106139123300020247MarineMIDNKEKTYLKSCKSDWDCGNYFYGPKYRYCKQCREKDMC
Ga0211605_103978413300020339MarineMIATNKNTDILKKCESDFNCGNYFYHTKYRYCEQC
Ga0211594_106977623300020340MarineMIATNKNTDILKKCESDFNCGNYFYHTKYRYCEQCRAKDWC
Ga0211652_1012267023300020379MarineIMIDNKEKHYLKACKSDFKCGNYFYGPKYQYCEQCRAKDMC
Ga0211705_1002886033300020395MarineMLNSTLSNKQDDILKPCESEFKCGNYFYHSKYRYCEQCRAKDWC
Ga0211644_1003173913300020416MarineMIDNKDSDILKACESDFKCGNYFYHSKYRYCEQCRAK
Ga0211581_1034249123300020429MarineMGRRMIDNKDSDILKACESDFKCGNYFYHSKYRYCEQC
Ga0211708_1001249123300020436MarineMITTNKSTDILKKCESDFNCGNYFYHTKYRYCEQCRAKDWC
Ga0211576_1000062633300020438MarineMIDNKDKEVLKPCKSDFKCGNYFYGPKYKYCEQCRAKDMC
Ga0211576_1000641443300020438MarineMIDNKEKHYLKACKSDWNCGEYFYGPQYKYCKKCRAKEMC
Ga0211576_1001795533300020438MarineMIDNKDKEVLKPCKSDFKCGNYFYGPEYRYCKQCRAKDMC
Ga0211558_1040275823300020439MarineMGRRRMIDNKEKKFLKACQSDLACGNYFYHTKYRYCEVCRTKDWC
Ga0211643_1001531533300020457MarineMIDNKDSDILKACESDFKCGNYFYHSKYRYCEQCRAKDMC
Ga0213858_1003900023300021356SeawaterMIDNKDSDILKACESDFACGNYFYHTKYRYCEQCRVKDMC
Ga0222718_1000067953300021958Estuarine WaterMIDNKQKDILQACQSDMKCGNYFYHTKYRYCEQCRAKDYC
Ga0222718_1000241823300021958Estuarine WaterMVDNKEKHYLKACKSDWNCGEYFYGPQYNMCKQCRTKEMC
Ga0222718_1002221133300021958Estuarine WaterMIDNKEKHYLKACKSDFKCGNYFYGPKYQFCEKCRAKEMC
Ga0222716_1062687233300021959Estuarine WaterMVDNKQKDYLKACKSDFKCGNYFYGPDYRYCEQCRAKD
Ga0222719_1001235733300021964Estuarine WaterMIDNKEKHYLKACKSDWNCGEYFYGPKYSMCKQCRAKDMC
Ga0196899_100383823300022187AqueousMMDNKDTDILKPCESDFKCGNYFYHTKYRYCEQCRAKDVC
Ga0196899_102416923300022187AqueousMIDNKDTAILKPCESDSKCGNYFYHTKYRYCEQCRAKDMC
Ga0244775_1061586013300024346EstuarineGRGIMIDNKEKHYLKSCKSDWNCGEYFYGPQYSMCKKCRAKEMC
Ga0208791_105243713300025083MarineIDNKDREVLKPCKSDFKCGNYFYGPKYQYCEICRAKDMC
Ga0208298_100027413300025084MarineMIDNKEKQYLKACKSDFKCGNYFYGPKYQYCEICRAKDMC
Ga0208298_100354733300025084MarineMGRGRMIDNKDREVLKPCKSDFKCGNYFYGPKYQYCEICRAKDMC
Ga0208298_106947323300025084MarineMIDNKEKHYLKACKSDFKCGNYFYGPKYQYCEQCRAKDMC
Ga0208793_102450933300025108MarineMIDNKEKQYLKACKSDFKCGNYFYGPKYQYCEQCRAKDMC
Ga0208162_104627223300025674AqueousMIDNKDTDILKPCESDFKCGNYFYHTKYKYCEQCRAKDMC
Ga0209305_100054483300025712Pelagic MarineMIDNKEKHYLKACKSDWNCGEYFYGPKYSMCKQCRDKEMC
Ga0208547_100174333300025828AqueousMTDNKDTDILKPCESDFKCGNYFYHTKYRYCEQCRAKDVC
Ga0208547_115021913300025828AqueousRTVVEMIDNKHSDILKPCESDLKCGNYFYHTKYRYCEQCRAKDYC
Ga0208644_105158233300025889AqueousIDNKDTDILKPCESDFKCGNYFYHTKYRYCEQCRTKDYC
Ga0209631_1002138613300025890Pelagic MarineDNKEKHYLKACKSDWNCGEYFYGPKYSMCKQCRNKEMC
Ga0209631_1007443033300025890Pelagic MarineDNKEKHYLKACKSDWNCGEYFYGPKYSMCKQCRDKEMC
Ga0209929_100882433300026187Pond WaterMVDNKQKDYLKACKSDFKCGNYFYGPDYRYCEQCRAKDMC
Ga0209929_102513133300026187Pond WaterNKQKDYLKACKSDFKCGNYFYGPDYRYCEQCRTKDMC
Ga0247588_113005313300026465SeawaterKEKHYLKACKSDWNCGEYFYGPQYSMCKQCRDKEMC
Ga0208671_1008257923300027757EstuarineIVAMVDNKEKHYLKACKSDFKCGNYFYGPKYQYCEQCRAKDMC
Ga0209404_1000461233300027906MarineMIDNKDTDILKPCESEIKCGNYFYSPIYRYCEQCRVKDMC
Ga0233450_1012337413300028115Salt MarshMIDNKDSNILKACQSDFSCGNYFYHTKYRYCEQCRAKDY
Ga0257114_115305523300028196MarineMVDNKEKHYLKACKSDWNCGEYFYGPQYSMCKKCRDKEMC
Ga0315330_1002411323300032047SeawaterMIATNESTDILKKCESDFACGNYFYHTKYRYCEQCRSKDWC
Ga0316202_1003674733300032277Microbial MatIMIDNKEKHYLKACKSDWNCGEYFYGPKYSMCKQCRDKEMC


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