Metagenome / Metatranscriptome Family F101282

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101282
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	68 residues
Representative Sequence	MMSRIPFPVVATHDISKGHAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGVAVTLSYLTRNDLREA
Number of Associated Samples	63
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	55.88 %
% of genes near scaffold ends (potentially truncated)	29.41 %
% of genes from short scaffolds (< 2000 bps)	93.14 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.824 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.490 % of family members)
Environment Ontology (ENVO)	Unclassified (48.039 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (62.745 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 28.87% Coil/Unstructured: 71.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.75
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.75
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SCOP family	SCOP domain	Representative PDB	TM-score
b.34.2.1: SH3-domain	d1k9ab1	1k9a	0.66886
b.34.2.0: automated matches	d2egca1	2egc	0.66476
b.34.4.4: Nitrile hydratase beta chain	d3hhtb_	3hht	0.66341
b.34.2.0: automated matches	d2dl5a1	2dl5	0.65737
b.34.4.3: Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain	d1dj7b_	1dj7	0.6564

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13472	Lipase_GDSL_2	3.92
PF02021	UPF0102	2.94
PF06737	Transglycosylas	2.94
PF01128	IspD	1.96
PF12728	HTH_17	1.96
PF14279	HNH_5	1.96
PF00563	EAL	1.96
PF13460	NAD_binding_10	0.98
PF13541	ChlI	0.98
PF13305	TetR_C_33	0.98
PF00196	GerE	0.98
PF10604	Polyketide_cyc2	0.98
PF00872	Transposase_mut	0.98
PF08533	Glyco_hydro_42C	0.98
PF01844	HNH	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	Replication, recombination and repair [L]	2.94
COG0746	Molybdopterin-guanine dinucleotide biosynthesis protein A	Coenzyme transport and metabolism [H]	1.96
COG1207	Bifunctional protein GlmU, N-acetylglucosamine-1-phosphate-uridyltransferase/glucosamine-1-phosphate-acetyltransferase	Cell wall/membrane/envelope biogenesis [M]	1.96
COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	Lipid transport and metabolism [I]	1.96
COG2068	CTP:molybdopterin cytidylyltransferase MocA	Coenzyme transport and metabolism [H]	1.96
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	1.96
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	1.96
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	1.96
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	1.96
COG1874	Beta-galactosidase GanA	Carbohydrate transport and metabolism [G]	0.98
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
All Organisms	root	All Organisms	41.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
cellular organisms	root	All Organisms → cellular organisms	41.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	27.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	26.47 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	25.49 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Nakamurellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales	5.88 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	3.92 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.94 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.96 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Nakamurellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae	5.88 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	3.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.94 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.96 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	5.88 %
Goekera	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Goekera	2.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.94 %
unclassified Pseudonocardiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae	1.96 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.98 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Goekera deserti	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Goekera → Goekera deserti	2.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.94 %
Pseudonocardiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	1.96 %
Nakamurella multipartita	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita	1.96 %
unclassified Geodermatophilus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → unclassified Geodermatophilus	0.98 %
Nakamurella panacisegetis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella panacisegetis	0.98 %
unclassified Myxococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Goekera deserti	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Goekera → Goekera deserti	2.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.94 %
Nakamurella multipartita DSM 44233	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita → Nakamurella multipartita DSM 44233	1.96 %
Pseudonocardiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	1.96 %
Myxococcaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	0.98 %
Geodermatophilus sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → unclassified Geodermatophilus → Geodermatophilus sp.	0.98 %
Nakamurella panacisegetis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella panacisegetis	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005329\|Ga0070683_100338453	Not Available	1433	Open in IMG/M
3300005330\|Ga0070690_101695457	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300005334\|Ga0068869_100688958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Goekera → Goekera deserti	870	Open in IMG/M
3300005337\|Ga0070682_100075383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → unclassified Geodermatophilus → Geodermatophilus sp.	2169	Open in IMG/M
3300005337\|Ga0070682_100396893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1042	Open in IMG/M
3300005337\|Ga0070682_101317016	Not Available	614	Open in IMG/M
3300005338\|Ga0068868_101405478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Goekera → Goekera deserti	651	Open in IMG/M
3300005364\|Ga0070673_102313257	Not Available	511	Open in IMG/M
3300005456\|Ga0070678_100150297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	1875	Open in IMG/M
3300005456\|Ga0070678_100220035	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300005456\|Ga0070678_100248720	Not Available	1490	Open in IMG/M
3300005466\|Ga0070685_10214229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1259	Open in IMG/M
3300005466\|Ga0070685_10530821	Not Available	837	Open in IMG/M
3300005548\|Ga0070665_100726954	Not Available	1006	Open in IMG/M
3300005578\|Ga0068854_100711213	Not Available	868	Open in IMG/M
3300005618\|Ga0068864_102001070	Not Available	585	Open in IMG/M
3300005841\|Ga0068863_100861425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	905	Open in IMG/M
3300005841\|Ga0068863_101339673	Not Available	723	Open in IMG/M
3300005842\|Ga0068858_100713628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	976	Open in IMG/M
3300005995\|Ga0066790_10390239	Not Available	595	Open in IMG/M
3300006354\|Ga0075021_10819964	Not Available	602	Open in IMG/M
3300006358\|Ga0068871_100428818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1182	Open in IMG/M
3300006642\|Ga0075521_10075890	Not Available	1510	Open in IMG/M
3300006642\|Ga0075521_10352616	Not Available	712	Open in IMG/M
3300006881\|Ga0068865_101831718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Goekera → Goekera deserti	549	Open in IMG/M
3300009098\|Ga0105245_10420615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1339	Open in IMG/M
3300009098\|Ga0105245_10836203	Not Available	960	Open in IMG/M
3300009101\|Ga0105247_11054570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	638	Open in IMG/M
3300009101\|Ga0105247_11875017	Not Available	501	Open in IMG/M
3300009148\|Ga0105243_10217393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1687	Open in IMG/M
3300009176\|Ga0105242_10188696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1823	Open in IMG/M
3300009177\|Ga0105248_11148701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	878	Open in IMG/M
3300009177\|Ga0105248_13109676	Not Available	528	Open in IMG/M
3300009551\|Ga0105238_11048269	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300009553\|Ga0105249_12393052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	601	Open in IMG/M
3300009553\|Ga0105249_12693606	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300009553\|Ga0105249_13040760	Not Available	539	Open in IMG/M
3300010154\|Ga0127503_10235081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1397	Open in IMG/M
3300011119\|Ga0105246_10984645	All Organisms → cellular organisms → Bacteria → Proteobacteria	762	Open in IMG/M
3300011119\|Ga0105246_11142527	Not Available	714	Open in IMG/M
3300011119\|Ga0105246_11231870	Not Available	690	Open in IMG/M
3300012951\|Ga0164300_10067312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita → Nakamurella multipartita DSM 44233	1475	Open in IMG/M
3300012951\|Ga0164300_10345424	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300012955\|Ga0164298_10169120	Not Available	1248	Open in IMG/M
3300012955\|Ga0164298_10814524	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300012958\|Ga0164299_10261485	Not Available	1041	Open in IMG/M
3300012958\|Ga0164299_11017579	Not Available	612	Open in IMG/M
3300012958\|Ga0164299_11275384	Not Available	560	Open in IMG/M
3300012961\|Ga0164302_11754238	Not Available	522	Open in IMG/M
3300012984\|Ga0164309_10428110	Not Available	995	Open in IMG/M
3300012984\|Ga0164309_10555430	Not Available	889	Open in IMG/M
3300012985\|Ga0164308_10224505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita → Nakamurella multipartita DSM 44233	1448	Open in IMG/M
3300012985\|Ga0164308_11400267	Not Available	638	Open in IMG/M
3300012987\|Ga0164307_10006142	All Organisms → cellular organisms → Bacteria	5631	Open in IMG/M
3300012987\|Ga0164307_10065826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella panacisegetis	2145	Open in IMG/M
3300012987\|Ga0164307_10078932	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1993	Open in IMG/M
3300012988\|Ga0164306_10930129	Not Available	711	Open in IMG/M
3300012988\|Ga0164306_11570641	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300012988\|Ga0164306_12007566	Not Available	503	Open in IMG/M
3300012989\|Ga0164305_10711559	Not Available	822	Open in IMG/M
3300012989\|Ga0164305_11528583	Not Available	593	Open in IMG/M
3300013296\|Ga0157374_11434194	Not Available	713	Open in IMG/M
3300013297\|Ga0157378_10552735	Not Available	1157	Open in IMG/M
3300013306\|Ga0163162_11359467	Not Available	808	Open in IMG/M
3300013308\|Ga0157375_10258937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1901	Open in IMG/M
3300014326\|Ga0157380_12275422	Not Available	606	Open in IMG/M
3300014968\|Ga0157379_10335795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	1381	Open in IMG/M
3300014968\|Ga0157379_10396081	Not Available	1269	Open in IMG/M
3300017792\|Ga0163161_10861690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	765	Open in IMG/M
3300018432\|Ga0190275_10037002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	3971	Open in IMG/M
3300018432\|Ga0190275_13340170	Not Available	519	Open in IMG/M
3300018920\|Ga0190273_10035412	All Organisms → cellular organisms → Bacteria	2401	Open in IMG/M
3300018920\|Ga0190273_10276789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1106	Open in IMG/M
3300019767\|Ga0190267_10377406	Not Available	779	Open in IMG/M
3300019767\|Ga0190267_11043920	Not Available	580	Open in IMG/M
3300025464\|Ga0208076_1060598	Not Available	657	Open in IMG/M
3300025474\|Ga0208479_1054790	Not Available	782	Open in IMG/M
3300025857\|Ga0209014_10209296	Not Available	671	Open in IMG/M
3300025878\|Ga0209584_10012137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2847	Open in IMG/M
3300025878\|Ga0209584_10063028	Not Available	1330	Open in IMG/M
3300025901\|Ga0207688_10651451	Not Available	665	Open in IMG/M
3300025904\|Ga0207647_10772354	Not Available	519	Open in IMG/M
3300025927\|Ga0207687_10075956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2412	Open in IMG/M
3300025927\|Ga0207687_10337818	Not Available	1224	Open in IMG/M
3300025927\|Ga0207687_10695611	Not Available	862	Open in IMG/M
3300025927\|Ga0207687_11400821	Not Available	601	Open in IMG/M
3300025935\|Ga0207709_10322112	Not Available	1157	Open in IMG/M
3300025935\|Ga0207709_10479529	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300025935\|Ga0207709_11453553	Not Available	568	Open in IMG/M
3300025939\|Ga0207665_11603335	Not Available	516	Open in IMG/M
3300025941\|Ga0207711_11960804	Not Available	528	Open in IMG/M
3300026035\|Ga0207703_12342596	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	510	Open in IMG/M
3300026121\|Ga0207683_10565190	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300026121\|Ga0207683_11000589	Not Available	776	Open in IMG/M
3300026294\|Ga0209839_10161579	Not Available	734	Open in IMG/M
3300028596\|Ga0247821_11040774	Not Available	550	Open in IMG/M
3300028597\|Ga0247820_10622501	Not Available	746	Open in IMG/M
3300028597\|Ga0247820_10735108	Not Available	690	Open in IMG/M
3300028597\|Ga0247820_10839716	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300028597\|Ga0247820_10992954	Not Available	599	Open in IMG/M
3300028608\|Ga0247819_10481954	Not Available	730	Open in IMG/M
3300029987\|Ga0311334_11493372	Not Available	572	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	50.98%
Host-Associated	Host-Associated	49.02%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.02%
Plants	Host-Associated → Plants	49.02%
Aquatic	Environmental → Aquatic	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.39%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.65%
Freshwater	Environmental → Aquatic → Freshwater	0.98%
Sediment	Environmental → Aquatic → Sediment	0.98%
Peat	Environmental → Terrestrial → Peat	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	28.43%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.75%
Loam	Environmental → Terrestrial → Soil → Loam	7.84%
Soil	Host-Associated → Plants → Rhizoplane → Soil	4.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	28.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.49%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.84%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.86%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	4.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.49%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	13.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	7.84%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	4.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.96%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.98%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300025464	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025857	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212 (SPAdes)	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070683_1003384531	3300005329	Corn Rhizosphere	MMSRIPFPVVATHDIRKGQAPLIKTGCAGDITGISGATPSHYTVAFRPFGPDGVVITLNYLTRTDLREA*
Ga0070690_1016954572	3300005330	Switchgrass Rhizosphere	ATHDICKGQAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGIAVTLSYLTRNDLREA*
Ga0068869_1006889581	3300005334	Miscanthus Rhizosphere	MMSRIPFPVVATHDISKGRAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGIAVTLSYLTRNDLREA*
Ga0070682_1000753833	3300005337	Corn Rhizosphere	MMTRIPFPVIAKRDIRQSTAYIRTGTPGEITGVSGATPPYYTVTFWPSGADSASITLSYLTRNDLREA*
Ga0070682_1003968931	3300005337	Corn Rhizosphere	MMSRIPFPVIATHDIRKGHAPLIKTGTAGEITGISGATPSHYTVAFRPFGPDGLVITLDYLTRTDLRDA*
Ga0070682_1013170161	3300005337	Corn Rhizosphere	MMTRIPFPVIAKRDIRQSTAYIRSGTPGEITGVNGATPPYYTVTFWPAGADAASITLSYLTRNDLREA*
Ga0068868_1014054781	3300005338	Miscanthus Rhizosphere	MMSRIPFPVVATHDISKGHAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGIAVTLSYLTRNDLREA*
Ga0070673_1023132571	3300005364	Switchgrass Rhizosphere	MMSRIPFPVVATHDIRKGQAPLIKTGCAGDITGISGATPSHYTVAFRPFGPDGVVITLNYLTRTDLR
Ga0070678_1001502972	3300005456	Miscanthus Rhizosphere	MMSRIPFPVVATHDICKGQAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGIAVTLSYLTRNDLREA*
Ga0070678_1002200351	3300005456	Miscanthus Rhizosphere	TALGGLSMMSRIPFPVVATHDISKGRAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGVAVTLSYLTRNDLREA*
Ga0070678_1002487202	3300005456	Miscanthus Rhizosphere	MMTRIPFPVIAKRDIRQSTAYIRTGTPGEITGVSGATPPYYTVTFWPSGADAASITLSYLTRNDLREA*
Ga0070685_102142292	3300005466	Switchgrass Rhizosphere	MMTRIPFPVIARRDIRQSTAYIRTGTPGEITGVSGATPPYYTVTFWPSGADAASITLSYLTRNDLREA*
Ga0070685_105308212	3300005466	Switchgrass Rhizosphere	MMTRIPFPVTARHDIRQSTVFIRSGTPGEITGVSGAQPSYYTVTFWPRGADSASVTLSYLTTNDLREA*
Ga0070665_1007269541	3300005548	Switchgrass Rhizosphere	MMSRIPFPVVATHDISKGRAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGIAVTLSYLTRND
Ga0068854_1007112132	3300005578	Corn Rhizosphere	MMSRIPFPVIATHDIHKGHAPLIKTGTAGEITGISGATPSHYTVAFRPFGPDGIVISIDYLTRTDLRDA*
Ga0068864_1020010701	3300005618	Switchgrass Rhizosphere	MMTRIPFPVIAKRDIRQSTAYIRSGTPGEITGVSGAQPSYYTVTFWPRGADSASVTLSYLTTNDLREA*
Ga0068863_1008614252	3300005841	Switchgrass Rhizosphere	MMSRIPFPVVATHDISKGYAPLIKSGTPGEITGISGATPGHYTVSFWPFGPDGVAVTLNYLTRNDLREA*
Ga0068863_1013396731	3300005841	Switchgrass Rhizosphere	MSRIPFPVIATHDIHKGHAPLIKTGTAGEITGISGATPSHYTVAFRPFGPDGIVISIDYLTRTDLRDA*
Ga0068858_1007136282	3300005842	Switchgrass Rhizosphere	MMTRIPFPVIAKRDIRQSTAYIRTGTPGEITGVSGATPPYYTVTFWPSGADSASIT
Ga0066790_103902391	3300005995	Soil	MMSRIPFPVVATHDIHKGQALIKTGTPGEITGVSGATPSHYTVTFWPLGADRASVTLSYLTRTDLREA*
Ga0075021_108199641	3300006354	Watersheds	MISRIPFPVIATHDIRKGHAPLITTGTAGEITGISGATPSHYTVAFRPFGPDGVVITLDYLTRTDLRDA*
Ga0068871_1004288182	3300006358	Miscanthus Rhizosphere	MMSRSPFPVVATHDICKGQAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGIAVTLSYLTRNDLREA*
Ga0075521_100758902	3300006642	Arctic Peat Soil	MMSRIPFPVVATHDIHKGQALIKTGTPGEITGVSGATPSHYTVTFRPFGLNGAVVTLHYLTGTDLREA*
Ga0075521_103526161	3300006642	Arctic Peat Soil	MMSRIPFPVVATHDIRKGQAPLIKRGTPGEITGVSGATPSHYTVTFWPYGLDGVVVTLTYLTRTDLREA*
Ga0068865_1018317181	3300006881	Miscanthus Rhizosphere	MMSRIPFPVVATHDISKGRAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGVAVTLSYLTRNDLREA*
Ga0105245_104206152	3300009098	Miscanthus Rhizosphere	MMAHIPFPVVATHDIQKGTAVVRTGTHGEITGISGATPSHYNVTFWPSGPDGTCVTLSYLTRTDIREA*
Ga0105245_108362031	3300009098	Miscanthus Rhizosphere	MMSRIPFPVVATHDISKGHAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGVAVTLSYLTRNDLREA*
Ga0105247_110545701	3300009101	Switchgrass Rhizosphere	MMTRIPFPVIARRDIRQSTAYIRTGTPGEITGVSGATPPYYTVTFWPSGADSASITLSYLTRNDLREA*
Ga0105247_118750172	3300009101	Switchgrass Rhizosphere	MFIGLGGLSMMSRIPFPVVATHDICKGQAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGIAVTLSYLTRNDLREA*
Ga0105243_102173931	3300009148	Miscanthus Rhizosphere	MMSRIPFPVIATHDIHKGHAPLIKTGTAGEITGISGATPSHYTVAFRPFGPDGIVISIDYLTRTDLRDAEHS*
Ga0105242_101886963	3300009176	Miscanthus Rhizosphere	MMSRIPFPVIATHDIHKGHAPLIKTGTAGEITGISGATPSHYTVAFRPFGPDGIVISIDY
Ga0105248_111487011	3300009177	Switchgrass Rhizosphere	MMSRIPFPVVATHDICKGQAPLIKSGTPGEITGISGATPSHYTVSFSPFGPDGIAVTLSYLTRNDLREA*
Ga0105248_131096761	3300009177	Switchgrass Rhizosphere	MSRIPFPVIATHDIRKGHIPMIKTGTAGEITGISGATPSHYTVAFRPFGPDGVVITIDYLTRTELRDA*
Ga0105238_110482691	3300009551	Corn Rhizosphere	AVTHIRFPATEGMSGSFSALGGLTMMSRIPFPVVATHDISKGRAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGIAVTLSYLTRNDLREA*
Ga0105249_123930522	3300009553	Switchgrass Rhizosphere	MLTRIPFPVIAKRDIRQSTAYIRTGTPGEITGVSGATPPYYTVTFWPSGADAASITLSYLTRNDLREA*
Ga0105249_126936062	3300009553	Switchgrass Rhizosphere	MMSRIPFPVVATHDIAKGHAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGVAVTLSYLTRNDLREA*
Ga0105249_130407601	3300009553	Switchgrass Rhizosphere	MMTRIPFPVIAKRDIRQSTAYIRSGTPGEITGVSEGSPSSYMATFWPFGPDSATVTVANLRRSDLIEA*
Ga0127503_102350812	3300010154	Soil	MMSHIPFPVVATHDIHKGRAYIKMGTPGEIIGISGATPSHYDVTFWPLDADGISVTLSYLTRIDLREA*
Ga0105246_109846452	3300011119	Miscanthus Rhizosphere	MMARIPFPVVATHDICKGRSPVIRKGTPGEITGVTNATPSHYTVTFWPPELKGEPVTLDYLTRTDLQEA*
Ga0105246_111425272	3300011119	Miscanthus Rhizosphere	MMAHMPCPVVATHDIHKGKAIIRTGTHGEITGISGATPSHYNVTFWPSGPDGTCVTLSYLTRTDIREA*
Ga0105246_112318702	3300011119	Miscanthus Rhizosphere	MMTRIPFPVIAKRDIRQSTAYIRTGTPGEITGVSGATPPYYTVTFWPSGADSASITLSYLTMNDLREA*
Ga0164300_100673121	3300012951	Soil	MISRIPFPVIATHDIRKGHAPLIKTGTAGEITGISGATPSHYTVAFRPFGPDGLVIILDYLTRTDLRDA*
Ga0164300_103454243	3300012951	Soil	FSALGGLTMMSRIPFPVVATHDISKGRAPLIKSGTPGEITGISGATPSHYTVSFWPFGPAGIAVTLSYLTRNDLREA*
Ga0164298_101691201	3300012955	Soil	MMSRIPFPVIATHDIHKGHAPLIKTGTAGELTGISGATPSHYTVAFRPFGPDGIVISIDYLTRTDLRDA*
Ga0164298_108145242	3300012955	Soil	VATHDISKGYAPLIKSGTPGEITGISGATPGHYTVSFWPFGPDGVAVTLNYLTRNDLREA
Ga0164299_102614853	3300012958	Soil	MISRIPFPVIATHDIRKGHAPLIKTGTAGEITGISGATPSHYTVAFRPCGPDGVVITLDYLTRTDLRDA*
Ga0164299_110175791	3300012958	Soil	MMYRIPFPVVATHDISKGRAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGIAVTLSYLTRNDL
Ga0164299_112753841	3300012958	Soil	MMSRIPFPVVATHDISKGHAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGVAVTLSYLTRN
Ga0164302_117542381	3300012961	Soil	MIAHIPFPVVATHDIHKGSAIIRTGTHGEITGISGATPSHYNVTFWPSGPDGSCVTLSYLTRIDIREA*
Ga0164309_104281102	3300012984	Soil	MISRIPFPVIATHDIRKGHAPLITTGTAGEITGISGATPSHYTVAFRPFGPDGVVITIDYLTRTELRDA*
Ga0164309_105554301	3300012984	Soil	MMSRIPFPVVATHDISKGYAPLIRSGTPGEITGISGATPGHYTVSFWPFGPDGVAVTLNYLTRNDLREA*
Ga0164308_102245052	3300012985	Soil	MISRIPFPVIATHDIRKGHAPLIKTGTAGEITGISGATPSHYTVAFRPFGPDGVVITIDYLTRTDLRDT*
Ga0164308_114002672	3300012985	Soil	GLTMMTHIPFPVVATHDIRKGAAVIKTGTHGEITGISGATPSHYNVTFWPSGPDGTCVTFSYLSRIDIREA*
Ga0164307_1000614210	3300012987	Soil	MMSRIPFPVIATHDIRKGHAPLITTGTAGEITGISGATPSHYTVAFRPFGPDGVVITLDYLTRTDLRDA*
Ga0164307_100658262	3300012987	Soil	MMAHIPFPVVATHDIHKGAAVIKTGTHGEITGISGATPSHYNVTFWPSGPDGTYVTLSYLTRTDIREA*
Ga0164307_100789322	3300012987	Soil	MMTRIPFPVIAKRDIRQSTAYIRTGTPGEITGVSGATPPYYTVTFWPSGADAASITLSYLTSNDLREA*
Ga0164306_109301292	3300012988	Soil	MMAHIPFPVVATHDIHKGAAVIKTGTHGEITGISGATPSHYNVTFWPSGADGTCVTLSYLTRIDIREA*
Ga0164306_115706411	3300012988	Soil	VVTALGGLSMMSRIPFPVVATHDISKGHAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGVAVTLSYLTRNDLREA*
Ga0164306_120075661	3300012988	Soil	MTRIPFPVIARRDIRQSAVDIRSGTPGEITGVSGATPPYYTVTFWPRGADSASVTLSYL
Ga0164305_107115591	3300012989	Soil	MMTRIPFPVIARRDIRQSAVYIRTGTPGEITGVSGATPTYYTVTFWPRGADSASVTLS
Ga0164305_115285831	3300012989	Soil	MMSRIPFPVVATHDISKGRAPLIKSGTPGEITGISGATPGHYTVSFWPFGPDGVAVTLNYLTRNDLREA*
Ga0157374_114341942	3300013296	Miscanthus Rhizosphere	HDLRQSTVFIRSGTPGEITGVSGAQPSYYTVTFWPRGADSASVTLSYLTTNDLREA*
Ga0157378_105527352	3300013297	Miscanthus Rhizosphere	MMCRIPFPIVATHDIRKGQAPLIKTGCAGDITGISGATPSHYTVAFRPFGPDGVVITLNYLTRTDLREA*
Ga0163162_113594671	3300013306	Switchgrass Rhizosphere	MMSRIPFPVIDTHDIRKGHAPLIKTGTAGEITGISGATPSHYTVAFRPFGPDGIVISIDYLTRTDLRDA*
Ga0157375_102589371	3300013308	Miscanthus Rhizosphere	MMTRIPFRVIARRDIRQSTAYIRTGTPGEITGVSGATPPYYTVTFWPSGADSASITLSYLTRNDLREA*
Ga0157380_122754221	3300014326	Switchgrass Rhizosphere	MMSRIPFPVIATHDIRRGQAPLIETGTAGEITGISGATPSHYTVAFRPFGPDGVVITIDYLTRSDLRDA*
Ga0157379_103357951	3300014968	Switchgrass Rhizosphere	MMSRIPFPVVATHDISKGYAPLIKSGTPGEITGISGATPGYYTVSFWPFGPDGVAVTLNYLTRNDLREA*
Ga0157379_103960812	3300014968	Switchgrass Rhizosphere	MMSRIPFPVIATHDIRKGHAPLIKTGTAGEITGISGATPSHYTVAFRPFGPDGIVISIDYLTRTDLRDA*
Ga0163161_108616901	3300017792	Switchgrass Rhizosphere	HMMTRIPFPVIAKRDIRQSTAYIRSGTPGEITGVNGATPPYYTVTFWPAGADAASITLSYLTRNDLREA
Ga0190275_100370023	3300018432	Soil	MMSRIPFPVVATHDIAKGHAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGVAVTLSYLTRNDLREA
Ga0190275_133401701	3300018432	Soil	MMSRIPFPVVATHDISKGHAPLIKSGTPGEITGISGATPSHYTVSFWPFGPHGVAVTLNYLTRNDLREA
Ga0190273_100354124	3300018920	Soil	MMSRIPFPVVATHDISKGHALLIKSGTPGEITGISGATPSHYTVSFWPFGPDGVAITLSYLTSNDLREA
Ga0190273_102767892	3300018920	Soil	MMTRIPFPVIATRDIRQSAVFIRGGTPGEITGVSGTTPPYYTVTFWPSGADRASVTLSYLTTNDLREA
Ga0190267_103774061	3300019767	Soil	MMSRIPFPVIATHDIRKGHAPLIKTGTAGDITGISGATPSHYTVAFRPFGPDGVVITLDYLTRTDLREA
Ga0190267_110439202	3300019767	Soil	MMARIPFPVVATHDICKGRSPVIRKGTPGEITGVSNATPSHYTMTFWPSELKGEPVTLDYLTRIDLQEA
Ga0208076_10605982	3300025464	Arctic Peat Soil	MMSRIPFPVVATHDIRKGQGPLIKRGTPGEITGVSGATPSHYTVTFWPYGLDGVVVTLTYLTRTDLREA
Ga0208479_10547901	3300025474	Arctic Peat Soil	PVVATHDIHKGQALIKTGTPGEITGVSGATPSHYTVTFRPFGLNGAVVTLHYLTGTDLRE
Ga0209014_102092962	3300025857	Arctic Peat Soil	MMSRIPFPVVATHDIHKGQALIKTGTPGEITGVSGATPSHYTVTFRPFGLNGAVVTLHYLTGTDLREA
Ga0209584_100121372	3300025878	Arctic Peat Soil	MMSRIPFPVVATHDIHKGQALIKTGTPGEITGVSGATPSHYTVTFWPLGADRASVTLSYLTRTDLREA
Ga0209584_100630281	3300025878	Arctic Peat Soil	LQPGGLPMMSRIPFPVVATHDIHKGQALIKTGTPGEITGVSGATPSHYTVTFRPFGLNGAVVTLHYLTGTDLREA
Ga0207688_106514511	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MSRIPFPVIATHDIHKGHAPLIKTGTAGEITGISGATPSHYTVAFRPFGPDGIVISIDYLTRTDLRDA
Ga0207647_107723541	3300025904	Corn Rhizosphere	MMSRIPFPVVATHDIRKGQAPLIKTGCAGDITGISGATPSHYTVAFRPFGPDGVVITLNYLTRTD
Ga0207687_100759564	3300025927	Miscanthus Rhizosphere	MMSRIPFPVIATHDIHKGHAPLIKTGTAGEITGISGATPSHYTVAFRPFGPDGIVISIDYLTRTDLRDA
Ga0207687_103378182	3300025927	Miscanthus Rhizosphere	MMSRIPFPVVATHDISKGRAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGIAVTLSYLTRNDLREA
Ga0207687_106956111	3300025927	Miscanthus Rhizosphere	MMTRIPFPVIAKRDIRQSTAYIRSGTPGEITGVNGATPPYYTVTFWPAGADAASITLSYLTRNDLREA
Ga0207687_114008212	3300025927	Miscanthus Rhizosphere	MAHMPCPVVATHDIHKGKAIIRTGTHGEITGISGATPSHYNVTFWPSGPDGTCVTLSYLTRTDIREA
Ga0207709_103221122	3300025935	Miscanthus Rhizosphere	MMSRIPFPVIATHDIRKGHLPLITTGTAGEITGISGATPSHYTVAFRPFGPDGLVITLDYLTRTDLRDA
Ga0207709_104795291	3300025935	Miscanthus Rhizosphere	SMMSRIPFPVVATHDISKGHAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGVAVTLSYLTRNDLREA
Ga0207709_114535532	3300025935	Miscanthus Rhizosphere	IAKRDIRQSTAYIRSGTPGEITGVNGATPPYYTVTFWPAGADAASITLSYLTRNDLREA
Ga0207665_116033352	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSRIPFPVIATHDIRKGHIPMIKTGTAGEITGISGATPSHYTVAFRPFGPDGVVITLDYLTRTDLRDA
Ga0207711_119608041	3300025941	Switchgrass Rhizosphere	MSRIPFPVIATHDIRKGHIPMIKTGTAGEITGISGATPSHYTVAFRPFGPDGVVITIDYLTRTELRDA
Ga0207703_123425961	3300026035	Switchgrass Rhizosphere	TEGMSGSFSALGGLTMMSRIPFPVVATHDISKGRAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGIAVTLSYLTRNDLREA
Ga0207683_105651902	3300026121	Miscanthus Rhizosphere	MMSRIPFPVVATHDISKGHAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGIAVTLSYLTRNDLREA
Ga0207683_110005892	3300026121	Miscanthus Rhizosphere	DIRKGHAPLIKTGTAGEITGISGATPSHYTVAFRPFGPDGIVISIDYLTRTDLRDA
Ga0209839_101615792	3300026294	Soil	MMSRIPFPVVATHDIHKGQALIKTGTPGEITGVSGATPSHYTVTFWPFGLNGAVVTLHYLTRTDLREA
Ga0247821_110407741	3300028596	Soil	MMTRIPFPVIAKRDIRQSTAYIRTGTPGEITGVSGATPPYYTVTFWPSGADAASITLSYLTRNDLREA
Ga0247820_106225012	3300028597	Soil	MMAHIPFPVVATHNIQKGTAVVRTGTHGEITGISGATPSHYNVTFWPSGPDGTCVTLSYLTRTDIREA
Ga0247820_107351081	3300028597	Soil	MMSRIPFPVVATHDISKGRAPLIKSGTPGEITGISGATPSHYTVSFWPFGPDGIAVTLSSLTTN
Ga0247820_108397162	3300028597	Soil	MMSRIPFPVVATHDISKGYAPLIKSGTPGEITGISGATPGHYTVSFWPFGPDGVAVTLNYLTRNDLREA
Ga0247820_109929542	3300028597	Soil	MMSRIPFPVVATHDISKGRAPIIRRGTPGEITGISGATPSHYTVSFWPFGPDGVSVTLSYLTTSDLREA
Ga0247819_104819542	3300028608	Soil	PMMSRIPFPVVATHDIRKGQAPLIKTGCAGDITGISGATPSHYTVAFRPFGPDGVVITLNYLTRTDLREA
Ga0311334_114933721	3300029987	Fen	MSRIPFPVVATHDIHKGQALIKTGTPGEITGVSGATPSHYTVTFWPLGADRASVTLSYLTRTDLREA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101282

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences