Metagenome / Metatranscriptome Family F101329

Basic Information
Family ID	F101329
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	42 residues
Representative Sequence	AVTIKIINNTNITSTKGVTLISLIGSLDERLNLKAILYY
Number of Associated Samples	59
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (34.314 % of family members)
Environment Ontology (ENVO)	Unclassified (68.627 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (86.275 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.75% β-sheet: 0.00% Coil/Unstructured: 49.25%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01618	MotA_ExbB	90.20
PF01709	Transcrip_reg	5.88
PF13277	YmdB	1.96

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0217	Transcriptional and/or translational regulatory protein YebC/TACO1	Translation, ribosomal structure and biogenesis [J]	5.88

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	97.06%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.96%
Sediment	Environmental → Aquatic → Sediment	0.98%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	62.75%
Coastal	Environmental → Aquatic → Marine → Coastal	13.73%
Pelagic	Environmental → Aquatic → Marine → Pelagic	9.80%
Volcanic	Environmental → Aquatic → Marine → Volcanic	6.86%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.96%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.96%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	38.24%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	23.53%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	13.73%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	9.80%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	6.86%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.96%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	34.31%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	13.73%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	9.80%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	8.82%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	7.84%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	6.86%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.94%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.96%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.98%
Environmental And Host-Associated	Environmental → Aquatic → Marine → Oceanic → Unclassified → Environmental And Host-Associated	0.98%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.98%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.98%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	0.98%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.98%
Water Column	Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column	0.98%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.98%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine	0.98%
Methane Seep Mesocosm	Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm	0.98%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.98%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.98%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.98%
Polar Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2008193001	Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Winter	Environmental	Open in IMG/M
2166559017	Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean5 (GOS 4441573)	Environmental	Open in IMG/M
2236876007	Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-0p1-Deep1200	Environmental	Open in IMG/M
3300001963	Marine microbial communities from Nags Head, North Carolina, USA - GS013	Environmental	Open in IMG/M
3300005401	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV203	Environmental	Open in IMG/M
3300005431	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75	Environmental	Open in IMG/M
3300006308	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m	Environmental	Open in IMG/M
3300007283	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_250_ad_252m_LV_B	Environmental	Open in IMG/M
3300007337	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S7 Surf_B metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007340	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 c16 DCM_A metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007504	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a	Environmental	Open in IMG/M
3300007509	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate b	Environmental	Open in IMG/M
3300007514	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a	Environmental	Open in IMG/M
3300007778	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG	Environmental	Open in IMG/M
3300008097	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (version 2)	Environmental	Open in IMG/M
3300008249	Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN10B Hudson Canyon	Environmental	Open in IMG/M
3300008629	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um	Environmental	Open in IMG/M
3300008738	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um, replicate b	Environmental	Open in IMG/M
3300009000	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG	Environmental	Open in IMG/M
3300009008	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um	Environmental	Open in IMG/M
3300009103	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um	Environmental	Open in IMG/M
3300009104	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um	Environmental	Open in IMG/M
3300009124	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf	Environmental	Open in IMG/M
3300009172	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154	Environmental	Open in IMG/M
3300009193	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321	Environmental	Open in IMG/M
3300009409	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150	Environmental	Open in IMG/M
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental	Open in IMG/M
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental	Open in IMG/M
3300009442	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519	Environmental	Open in IMG/M
3300009472	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404	Environmental	Open in IMG/M
3300009476	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407	Environmental	Open in IMG/M
3300009481	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG	Environmental	Open in IMG/M
3300009498	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426	Environmental	Open in IMG/M
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental	Open in IMG/M
3300009526	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300009703	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG	Environmental	Open in IMG/M
3300009785	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130	Environmental	Open in IMG/M
3300009790	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome	Environmental	Open in IMG/M
3300010297	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA	Environmental	Open in IMG/M
3300010883	western Arctic Ocean co-assembly	Environmental	Open in IMG/M
3300010936	Marine microbial communities from surface seawater of North Pacific Subtropical Gyre ? Stn. ALOHA, 15m	Environmental	Open in IMG/M
3300011254	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02	Environmental	Open in IMG/M
3300011325	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 DCM_B metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011331	Marine microbial communities from the Southern Atlantic ocean - KN S17 Surf_B metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012414	Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA16.ICE_1m.20151115 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012525	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300012950	Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG	Environmental	Open in IMG/M
3300012952	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome	Environmental	Open in IMG/M
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental	Open in IMG/M
3300013010	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA	Environmental	Open in IMG/M
3300013195	Marine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station7_GOM_Metagenome	Environmental	Open in IMG/M
3300026269	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263 (SPAdes)	Environmental	Open in IMG/M
3300027830	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV (SPAdes)	Environmental	Open in IMG/M
3300032820	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2008211954	2008193001	Marine	MALTLLAKNPAELSGKSTCIPTVNNGAVTIKIINNTNITSTKGVTLISLIGSLDERLNLKAILYY
Ocean5-_01692380	2166559017	Environmental And Host-Associated	IKIIKRTSITSTKGVTFISLIGSLSERFKLNAILDY
none_04798791	2236876007	Marine Estuarine	SPTQKGAVTIKIISKTNITSTKGVTLISLIGSLDERFN
GOS2229_10243711	3300001963	Marine	FLVDLLEHPLVNNGAVTMKIISSTSITSTNGVTLISLIGSLEERFNLNAILNN*
Ga0066857_103337182	3300005401	Marine	KGAVTIKIINNTNITSTKGVTLISLIGPLDELFNLNAIN*
Ga0066854_102572912	3300005431	Marine	PTVKKGAVTINIINKTSITSTNGVTFISLIGSLDELFNLNVIN*
Ga0068470_11824071	3300006308	Marine	VNRGAVTIKIMSKTNITSTKGVTLISLIGSFDERLN*
Ga0066366_103411141	3300007283	Marine	VSSGAVTIKIISKTNITSTKGVTLISLIGSFDERLN*
Ga0066366_104138161	3300007283	Marine	GAVTIKIISSTNITSTNGVTFISLIGFLSERFNLKVILNYR*
Ga0079244_10060761	3300007337	Marine	AVTIKIIKSTNITSTNGVTFISLIGSFDERFNLKAILDNR*
Ga0079241_12657072	3300007340	Marine	VTINIINNTSITSTNGVTFISLIGSLDELLNLNAII*
Ga0104999_11231141	3300007504	Water Column	KGAVTIKIINNTNITSTKGVTLISLIGSLDKLFNLNAIN*
Ga0105012_11222991	3300007509	Marine	TIKIINKTNITSTNGVTFISLIGSLDERFNLKVILNYR*
Ga0105020_10708335	3300007514	Marine	IKIINNTNITSTNGVTFISLIGSLSELLNLNAILDY*
Ga0102954_11109302	3300007778	Water	STCTPTVKSGAVTIKIIKRTNMTSTNGVTLISLMGSFDERFNLKAILNY*
Ga0111541_101280451	3300008097	Marine	IKIINNTNITSTNGVTFISLMGSLSERLNLNAILNYRYKSF*
Ga0105353_10988162	3300008249	Methane Seep Mesocosm	PTVNNGAVTINIINKTNITSTKGVTLISLIGSLDERFNLKVITK*
Ga0115658_11275401	3300008629	Marine	NIINKTNITSTKGVTFISLIGSLDERFNLKAILNY*
Ga0115660_11044521	3300008738	Marine	NGAVTMNIINKTNITSTKGVTFISLIGSLDERFNLKAILNY*
Ga0102960_13096141	3300009000	Pond Water	NGAVTINIINKTNITSTKGVTFISLIGSFDERLSLKAILNY*
Ga0115649_11780791	3300009008	Marine	AVTMNIINKTNITSTKGVTLISLIGSLDERFNLKAILNY*
Ga0115649_12234693	3300009008	Marine	VNKGAVTIKIINKTNITSTNGVTFISLIGSLDELFSLNAIN*
Ga0117901_13309301	3300009103	Marine	KESAELSGKSTWTPTVNNGAVTINIINKTNITSTNGVTFISLIGSLEERFNLKAILNYR*
Ga0117902_12834291	3300009104	Marine	PTVNNGAVTIKIIKSTNITSTNGVTFISLIGSLDERFNLKVILNYR*
Ga0118687_101321671	3300009124	Sediment	VNNGAVTINIINNTNITSTNGVTFISLIGSFDERLRLKAILYY*
Ga0114995_104773172	3300009172	Marine	GAVTINIINNTNITSTNGVTFISLMGSFDERLSLKAILYY*
Ga0115551_11401623	3300009193	Pelagic Marine	PTVNNGAVTIKIINRTSITSTNGVTFISLIGSFDERLSLKAILNYCKKSF*
Ga0115551_12662742	3300009193	Pelagic Marine	ELSGKSTCTPTVNSGAVTIKIIKRTSITSTKGVTLISLMGSFDERFNLKAILNY*
Ga0115551_14771661	3300009193	Pelagic Marine	WTPTVNNGAVTIKIINNTSITSTKGVTLISLIGSFEERFNLKAILNY*
Ga0114993_104074621	3300009409	Marine	TIKIINNTNITSTNGVTFISLIGSRDERFNLNAIAK*
Ga0114994_100487971	3300009420	Marine	TINIINKTNITSTNGVTLISLIGSFDERLSLKAMFKL*
Ga0114994_102285203	3300009420	Marine	IINKTNITSTKGVTLISLIGSFDERLSLKAILNY*
Ga0114994_105034732	3300009420	Marine	GAVTIKIINNTNITSTKGVTFISLIGSFDERFILKAI*
Ga0114994_110539622	3300009420	Marine	INIINNTNITSTKGVTLISLIGSLDERLSLKAILYY*
Ga0114997_101070414	3300009425	Marine	AELSGKSTCTPTVNSGAVTIKIINNTSITSTKGVTFISLIGSFTERLSLKAILDY*
Ga0114997_103433011	3300009425	Marine	IKIINNTNITSTKGVTLISLMGSLDERLSLNAILYY*
Ga0114997_103874902	3300009425	Marine	VNNGAVTIKIINNTNITSTKGVTLISLIGSLDERLNLKAILYY*
Ga0114997_103964761	3300009425	Marine	KSTCTPTVNSGAVTIKIINNTNITSTKGVTFISLMGSLDELLSLNAIILNN*
Ga0114997_104041261	3300009425	Marine	NNGAVTIKIINNTNITSTKGVTLISLMGSLDERLSLKAILYY*
Ga0114997_107595112	3300009425	Marine	IKIINNTNITSTKGVTLISLIGSFDERLSLKAILYY*
Ga0115563_11878591	3300009442	Pelagic Marine	NGAVTIKIMRRTNITSTNGVTLISLIGSFDERFNLNAI*
Ga0115554_10395241	3300009472	Pelagic Marine	IRRTNITSTNGVTFISLIGSFDERLSLKAIFKLL*
Ga0115554_11279851	3300009472	Pelagic Marine	GAVTIKIINNTNITSTKGVTLMSLIGSFDERFNLKAILNYS*
Ga0115554_12242012	3300009472	Pelagic Marine	TIKIINNTNITSTKGVTLISLIGSLDERLSLKAILYN*
Ga0115555_14417951	3300009476	Pelagic Marine	INIIRRTSITSTNGVTLISLIGSLDERFNLNAILNYS*
Ga0114932_103726022	3300009481	Deep Subsurface	TPTVKKGAVTINIINKTNITSTNGVTFISLIGSFDERFILKAIF*
Ga0114932_106493041	3300009481	Deep Subsurface	KGAVTIKIISKTSITSTKGVTLISLIGSFDERLS*
Ga0115568_102258611	3300009498	Pelagic Marine	NNGAVTIKIINNTNITSTKGVTFISLIGSFDERLNLKAI*
Ga0115572_105710191	3300009507	Pelagic Marine	GRSTCIPTVNNGAVTINIINNTNITSTKGVTFISLMGSLDERLSLKVILYY*
Ga0115004_107565892	3300009526	Marine	SKGAVTIKIINKTNITSTNGVTLISLIGSFLERLNLKAII*
Ga0115011_106969322	3300009593	Marine	VTMNIIRSTNITSTNGVTFISLIGSLDERLNLKAILNYS*
Ga0115011_112305431	3300009593	Marine	INKTNITSTNGVTLISLIGSLDERFNLKAILNYR*
Ga0115011_112993402	3300009593	Marine	GAVTINIISKTSITSTNGVTLISLIGSLDERLNLKAILNYC*
Ga0114933_106026172	3300009703	Deep Subsurface	TVNNGAVTINIINKTNITSTKGVTLISLIGSLDERFNLKVITK*
Ga0114933_106547262	3300009703	Deep Subsurface	GRSTWTPTVNNGAVTIKIINNTNITSTNGVTFISLIGSLSERLNLNAILNY*
Ga0114933_108781162	3300009703	Deep Subsurface	INMINKTSITSTNGVTLISLIGSFFERLKLKAIN*
Ga0114933_110155162	3300009703	Deep Subsurface	GKVSAEVSGKSTCTPTVSKGAVTIKIIKRTSITSTNGVTFISLIGSLSERFKLNAMLNY*
Ga0114933_110663461	3300009703	Deep Subsurface	KIIKSTNMTSTNGVTFISLIGSLDERLNLKAIFKL*
Ga0115001_100440401	3300009785	Marine	IKIIKRTNITSTKGVTFISLIGSFLERFNLKAII*
Ga0115001_105554251	3300009785	Marine	NGAVTIKIINNTNITSTKGVTLISLIGSFDERFSLKAILNY*
Ga0115001_107609911	3300009785	Marine	NTNITSTKGVTLISLMGSFDERLSLKAIFKLLIKIF*
Ga0115012_113061472	3300009790	Marine	MKIIKSTNITSTNGVTFISLIGSFDERFNLKAILDNR*
Ga0115012_114508792	3300009790	Marine	VSKGAVTMKIMRSTNITSTKGVTFISLIGSFLERLNLNAIFFIK*
Ga0129345_13598092	3300010297	Freshwater To Marine Saline Gradient	GAVTIKMINKTNITSTKGVTLISLIGSFDERLNLNAIW*
Ga0133547_112837503	3300010883	Marine	AVTIKIINNTNITSTKGVTLISLIGSLDERLNLKAILYY*
Ga0133547_118468203	3300010883	Marine	VTINIINNTNITSTKGVTLISLIGSLDERLSLKAILNY*
Ga0137784_11927622	3300010936	Marine	VTINMIKRTNITSTNGVTFISLIGSFEERFNLKAILNYC*
Ga0151675_10598542	3300011254	Marine	GAVTIKIMRRTNITSTNGVTLISLIGSFDERFNLNAI*
Ga0138365_10619291	3300011325	Marine	AVTIKIISKTNITSTNGVTFISLIGSFFELLNLKAILNYLNKSF*
Ga0138384_10184181	3300011331	Marine	TVNKGAVTMKIISKTNITSTNGVTFISLIGSFDERLNLNAILDNS*
Ga0138264_17619452	3300012414	Polar Marine	SAELSGKSTCIPTVNNGAVTINIINNTNITSTNGVTFISLIGSFDERLSLKAILYY*
Ga0129353_15817391	3300012525	Aqueous	TIKIIKRTNITSTKGVTLISLMGSFDERFNLKAI*
Ga0160422_104233942	3300012919	Seawater	VTINIINKTSITSTNGVTLISLIGSLDERFNLKAILNYC*
Ga0160422_107371131	3300012919	Seawater	TINKTSITSTKGVTLISLIGSFEERLNLKAILNYS*
Ga0160422_108524731	3300012919	Seawater	VTIKIIKSTNITSTKGVTFISLIGSRVDRLNLKAILNN*
Ga0160423_110946442	3300012920	Surface Seawater	TVNKGAVTIKIIKSTNITSTNGVTFISLIGSFDERFNLKAILDNR*
Ga0163110_107009501	3300012928	Surface Seawater	GKESAADSGKSTCTPTVSKGAVTINIISKTNITSTNGVTFISLIGWFFERLKLNAIIIK*
Ga0163110_110083061	3300012928	Surface Seawater	SGAVTIKIIKRTSITSTNGVTFISLIGSFLERLNLNAILND*
Ga0163110_113976542	3300012928	Surface Seawater	AELSGKSTCTPTVNKGAVTIKIIRRTNITSTNGVTFISLIGSFDERFRLKAILNY*
Ga0163110_114364701	3300012928	Surface Seawater	VNKGAVTIKIINSTSITSTNGVTFISLIGSLDERLSLNAI*
Ga0163109_100712725	3300012936	Surface Seawater	TCTPTVNNGAVTMNIIRSTNITSTNGVTLISLIGSFDERFNLKAILNYS*
Ga0163109_105757871	3300012936	Surface Seawater	KGAVTIKIIKSTNITSTNGVTFISLIGSFFERLKLKAIIKL*
Ga0163108_100170701	3300012950	Seawater	PTVSNGAVTIKIINKTNITSTKGVTFISLIGSLDELLNLNAIN*
Ga0163108_100575375	3300012950	Seawater	PTVSRGAVTMKIINKTSITSTNGVTFISLIGSLSERFNLNAILNY*
Ga0163108_103688403	3300012950	Seawater	AVTIKIINKTNITSTNGVTFISLIGSLDERFNLKAILNYR*
Ga0163108_107164531	3300012950	Seawater	VTIKIIKRTNITSTNGVTLISLIGSLEDLLKLKAIF*
Ga0163108_107563272	3300012950	Seawater	IINNTNITSTKGVTLISLIGSLDERFVLKAILDY*
Ga0163180_112401011	3300012952	Seawater	TPTVNNGAVTIKITNRTSITSTKGVTFISLIGSLDERLNLNAILNY*
Ga0163180_118562702	3300012952	Seawater	AVTIKIINNTNITSTNGVTFISLIGSLDELLNLNAIN*
Ga0163111_102288741	3300012954	Surface Seawater	MIKSTNITSTKGVTFISLIGSLDERFNLKAILNYS*
Ga0163111_104371501	3300012954	Surface Seawater	IKIINKTNMTSTNGVTFISLIGSFLERLNLKAILNN*
Ga0163111_107931862	3300012954	Surface Seawater	VTIKIINKTSITSTNGVTLISLIGSFLERLNLNAIILNY*
Ga0163111_108447491	3300012954	Surface Seawater	TVNNGAVTINIINKTSITSTKGVTFISLMGSFFERLKLKAILDY*
Ga0163111_114227581	3300012954	Surface Seawater	VNNGAVTIKIISNTNITSTNGVTLISLIGSFLERLNLNAIFFIK*
Ga0163111_117487862	3300012954	Surface Seawater	VTINIIKSTNITSTKGVTLISLIGSFDERFNLKAILNYS*
Ga0163111_121304201	3300012954	Surface Seawater	PTVNRGAVTINIINKTSITSTNGVTLISLIGSFFERLNLKAIVI*
Ga0129327_105629591	3300013010	Freshwater To Marine Saline Gradient	IINNTNITSTKGVTLISLIGSLDERLILKAILYY*
Ga0129327_108022682	3300013010	Freshwater To Marine Saline Gradient	SAELSGKSTCTPTVNNGAVTMNIINNTNITSTNGVTLISLMGSLDERLSLKAILYYR*
Ga0116815_10075043	3300013195	Marine	GAVTMKIINRTNMTSTNGVTFISLIGSFLERLNLNAITKLLIKIF*
Ga0208766_11901332	3300026269	Marine	AVTIKIINKTNITSTNGVTFISLIGSLDELFNLNAIN
Ga0209359_101136083	3300027830	Marine	AVTMKMISRTNITSTKGVTLISLIGWFFERLILNAMIIRL
Ga0310342_1002969704	3300032820	Seawater	GAVTIKIISKTNITSTKGVTFISLMGSLDERLSLKLIKFYLNN

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101329

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign