Metagenome / Metatranscriptome Family F101477

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101477
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	84 residues
Representative Sequence	MNFWGAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWASTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKNQKQ
Number of Associated Samples	68
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	67.65 %
% of genes near scaffold ends (potentially truncated)	39.22 %
% of genes from short scaffolds (< 2000 bps)	86.27 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.765 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (31.372 % of family members)
Environment Ontology (ENVO)	Unclassified (50.980 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.863 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 67.86% β-sheet: 0.00% Coil/Unstructured: 32.14%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00654	Voltage_CLC	6.86
PF14559	TPR_19	2.94
PF07721	TPR_4	1.96
PF07992	Pyr_redox_2	0.98
PF14294	DUF4372	0.98
PF13432	TPR_16	0.98
PF06411	HdeA	0.98
PF13492	GAF_3	0.98
PF13185	GAF_2	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	6.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.76 %
All Organisms	root	All Organisms	38.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.76 %
cellular organisms	root	All Organisms → cellular organisms	38.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.76 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.78 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.76 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.76 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.98 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.76 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	2.94 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.96 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.98 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.76 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.96 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.98 %
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	0.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.76 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.96 %
unclassified Acidisphaera	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera	0.98 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.76 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.96 %
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	0.98 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886007\|SwRhRL2b_contig_150409	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	810	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c1954785	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300000559\|F14TC_100950744	Not Available	808	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1035057	Not Available	782	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1097769	Not Available	514	Open in IMG/M
3300000787\|JGI11643J11755_10916895	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300003911\|JGI25405J52794_10028873	All Organisms → cellular organisms → Bacteria → Proteobacteria	1146	Open in IMG/M
3300004281\|Ga0066397_10075774	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005169\|Ga0066810_10176969	Not Available	524	Open in IMG/M
3300005289\|Ga0065704_10027421	All Organisms → cellular organisms → Bacteria	1412	Open in IMG/M
3300005289\|Ga0065704_10056146	Not Available	587	Open in IMG/M
3300005294\|Ga0065705_11159039	Not Available	510	Open in IMG/M
3300005332\|Ga0066388_100212111	All Organisms → cellular organisms → Bacteria	2562	Open in IMG/M
3300005332\|Ga0066388_100270474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2341	Open in IMG/M
3300005332\|Ga0066388_101137893	Not Available	1326	Open in IMG/M
3300005332\|Ga0066388_101746204	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1103	Open in IMG/M
3300005332\|Ga0066388_101854617	Not Available	1074	Open in IMG/M
3300005332\|Ga0066388_101921600	Not Available	1057	Open in IMG/M
3300005713\|Ga0066905_101002293	Not Available	737	Open in IMG/M
3300005713\|Ga0066905_101387907	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300005713\|Ga0066905_101645875	Not Available	588	Open in IMG/M
3300005764\|Ga0066903_102235561	Not Available	1055	Open in IMG/M
3300005764\|Ga0066903_102636703	Not Available	974	Open in IMG/M
3300005764\|Ga0066903_102705313	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300005764\|Ga0066903_106122453	Not Available	629	Open in IMG/M
3300006049\|Ga0075417_10037199	All Organisms → cellular organisms → Bacteria	2047	Open in IMG/M
3300006058\|Ga0075432_10359708	Not Available	619	Open in IMG/M
3300006194\|Ga0075427_10051514	Not Available	709	Open in IMG/M
3300006844\|Ga0075428_100197529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2175	Open in IMG/M
3300006846\|Ga0075430_100065526	Not Available	3051	Open in IMG/M
3300006846\|Ga0075430_101771301	Not Available	507	Open in IMG/M
3300006854\|Ga0075425_100328604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1760	Open in IMG/M
3300007255\|Ga0099791_10199135	Not Available	944	Open in IMG/M
3300009094\|Ga0111539_10425091	Not Available	1547	Open in IMG/M
3300009100\|Ga0075418_10274971	Not Available	1794	Open in IMG/M
3300009147\|Ga0114129_11492873	Not Available	831	Open in IMG/M
3300009157\|Ga0105092_10202647	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300009157\|Ga0105092_10298409	Not Available	909	Open in IMG/M
3300009610\|Ga0105340_1495755	Not Available	546	Open in IMG/M
3300009792\|Ga0126374_11772392	Not Available	515	Open in IMG/M
3300010043\|Ga0126380_10421923	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300010043\|Ga0126380_11413465	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	612	Open in IMG/M
3300010043\|Ga0126380_11730669	Not Available	563	Open in IMG/M
3300010046\|Ga0126384_11424299	Not Available	647	Open in IMG/M
3300010046\|Ga0126384_11666150	Not Available	602	Open in IMG/M
3300010046\|Ga0126384_11767190	Not Available	586	Open in IMG/M
3300010046\|Ga0126384_12016220	Not Available	552	Open in IMG/M
3300010047\|Ga0126382_10277631	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
3300010047\|Ga0126382_10698216	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300010047\|Ga0126382_10714683	All Organisms → cellular organisms → Bacteria → Acidobacteria	842	Open in IMG/M
3300010047\|Ga0126382_11028380	Not Available	724	Open in IMG/M
3300010048\|Ga0126373_13193860	Not Available	510	Open in IMG/M
3300010358\|Ga0126370_11748200	Not Available	600	Open in IMG/M
3300010359\|Ga0126376_10475824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	1149	Open in IMG/M
3300010359\|Ga0126376_11453914	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300010360\|Ga0126372_10418731	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300010360\|Ga0126372_10890393	Not Available	892	Open in IMG/M
3300010361\|Ga0126378_11164851	Not Available	870	Open in IMG/M
3300010362\|Ga0126377_11154055	Not Available	844	Open in IMG/M
3300010362\|Ga0126377_11442808	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300010362\|Ga0126377_11567443	Not Available	733	Open in IMG/M
3300010366\|Ga0126379_10042029	All Organisms → cellular organisms → Bacteria	3690	Open in IMG/M
3300010366\|Ga0126379_10929276	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300010376\|Ga0126381_101853819	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300010376\|Ga0126381_102919755	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300010398\|Ga0126383_10432674	All Organisms → cellular organisms → Bacteria → Proteobacteria	1361	Open in IMG/M
3300010398\|Ga0126383_13627901	Not Available	504	Open in IMG/M
3300012350\|Ga0137372_10055208	All Organisms → cellular organisms → Bacteria → Proteobacteria	3486	Open in IMG/M
3300012354\|Ga0137366_11015447	Not Available	576	Open in IMG/M
3300012359\|Ga0137385_11625522	Not Available	510	Open in IMG/M
3300012685\|Ga0137397_10104161	Not Available	2082	Open in IMG/M
3300012929\|Ga0137404_10180281	All Organisms → cellular organisms → Bacteria → Proteobacteria	1777	Open in IMG/M
3300012929\|Ga0137404_11367490	Not Available	653	Open in IMG/M
3300012930\|Ga0137407_10063708	Not Available	3043	Open in IMG/M
3300012930\|Ga0137407_12278973	Not Available	518	Open in IMG/M
3300012944\|Ga0137410_11335615	Not Available	621	Open in IMG/M
3300012948\|Ga0126375_10908868	Not Available	708	Open in IMG/M
3300012948\|Ga0126375_11798993	Not Available	535	Open in IMG/M
3300012948\|Ga0126375_11891598	Not Available	524	Open in IMG/M
3300015264\|Ga0137403_10161895	All Organisms → cellular organisms → Bacteria	2196	Open in IMG/M
3300016270\|Ga0182036_11004405	Not Available	688	Open in IMG/M
3300016294\|Ga0182041_11531389	Not Available	614	Open in IMG/M
3300018028\|Ga0184608_10021397	All Organisms → cellular organisms → Bacteria	2352	Open in IMG/M
3300018052\|Ga0184638_1023240	All Organisms → cellular organisms → Bacteria	2207	Open in IMG/M
3300018053\|Ga0184626_10043406	All Organisms → cellular organisms → Bacteria	1873	Open in IMG/M
3300018053\|Ga0184626_10168903	Not Available	930	Open in IMG/M
3300018067\|Ga0184611_1330133	Not Available	525	Open in IMG/M
3300018081\|Ga0184625_10194951	Not Available	1061	Open in IMG/M
3300018084\|Ga0184629_10688274	Not Available	515	Open in IMG/M
3300021560\|Ga0126371_13634859	Not Available	520	Open in IMG/M
3300027646\|Ga0209466_1123052	Not Available	527	Open in IMG/M
3300027654\|Ga0209799_1000208	All Organisms → cellular organisms → Bacteria	10719	Open in IMG/M
3300027654\|Ga0209799_1029863	Not Available	1207	Open in IMG/M
3300027873\|Ga0209814_10003215	All Organisms → cellular organisms → Bacteria	6067	Open in IMG/M
3300030552\|Ga0247654_1041066	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300030570\|Ga0247647_1126188	Not Available	666	Open in IMG/M
3300030576\|Ga0247644_1075764	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300031446\|Ga0170820_15623531	Not Available	802	Open in IMG/M
3300031720\|Ga0307469_10517409	Not Available	1050	Open in IMG/M
3300031890\|Ga0306925_11994985	Not Available	548	Open in IMG/M
3300031942\|Ga0310916_11180165	Not Available	634	Open in IMG/M
3300034417\|Ga0364941_102637	Not Available	690	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.29%
Host-Associated	Host-Associated	14.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.49%
Plants	Host-Associated → Plants	14.71%
Aquatic	Environmental → Aquatic	9.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.78%
Sediment	Environmental → Aquatic → Sediment	7.84%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.92%
Freshwater	Environmental → Aquatic → Freshwater	1.96%
Floodplain	Environmental → Terrestrial → Floodplain	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.86%
Loam	Environmental → Terrestrial → Soil → Loam	17.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	31.37%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.78%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300030552	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db7 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030570	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb12 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030576	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb9 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL2b_0072.00008350	2162886007	Switchgrass Rhizosphere	MNFWGAGLLAVVLAIQEKPIITGDCSDENLNRLAITHGRYLKSLWVSTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ
ICChiseqgaiiDRAFT_19547851	3300000033	Soil	MNFWGAGLLAVVLAIQEKPIITGDCSDENLNRLAITHGRYLKSLWASTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ*
F14TC_1009507441	3300000559	Soil	MNFWGAGLLAVVLAIQEKPIITGDCSDENLNRLAITHGRYLKSLWVSTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ*PLNT
AF_2010_repII_A01DRAFT_10350572	3300000580	Forest Soil	MNFWAAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWATTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKREKQ*
AF_2010_repII_A100DRAFT_10977691	3300000655	Forest Soil	MNFWAAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWASTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKDKQ*
JGI11643J11755_109168951	3300000787	Soil	VLAIQEKPIITGDCSDENLNRLAITHGRYLKSLWASTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ*
JGI25405J52794_100288732	3300003911	Tabebuia Heterophylla Rhizosphere	MNFWAAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWATTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0066397_100757741	3300004281	Tropical Forest Soil	AVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWASTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEK*
Ga0066810_101769692	3300005169	Soil	MNFWGAGLLAVVLAIQEKPIITGDCSDENFNRLAISHGLYLKSLWASTEIKTGQDLAVLIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0065704_100274211	3300005289	Switchgrass Rhizosphere	MNFWGAGLLAVVLAIQEKPIITGDCSDENLNRLAITHGRYLKSLWVSTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0065704_100561461	3300005289	Switchgrass Rhizosphere	MNLWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGRYLKSLWASTEIATGQDLAFLIQEEXKTLRQLYGYMRECDGKKAKQ*
Ga0065705_111590392	3300005294	Switchgrass Rhizosphere	AMNTRRKKTDRNRKMNLWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGRYLKSLWASTEIATGQDLAFLIQEEDKTLRQLYGYMRECDGKKAKQ*
Ga0066388_1002121113	3300005332	Tropical Forest Soil	MNFWAAGLLAMVLAIQEKPIITGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKREKQ*
Ga0066388_1002704742	3300005332	Tropical Forest Soil	MSFWAAGLLAMVLAIQEKPIITGDCSDENINRLAISHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0066388_1011378932	3300005332	Tropical Forest Soil	MNFWAAGLLAMVLAIQEKPIITGDCSDENINRLAISHGRYLKTLWSSTEINTGQDLAVLILEEDKTLRQLYGYMRQCDGKKEK*
Ga0066388_1017462042	3300005332	Tropical Forest Soil	MNFWGAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWASTEINTGQDLAVLIQEEDKTLRQLYGYVRQCDGKNQKQ*
Ga0066388_1018546172	3300005332	Tropical Forest Soil	MTKETDRNRKMNFWAAGLLAVVLAIQEKPTITGDCSDENINRLAITHGRYLKSLWATTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKERQ*
Ga0066388_1019216002	3300005332	Tropical Forest Soil	MNFWGAALLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWTMTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0066905_1010022931	3300005713	Tropical Forest Soil	MNFWGAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKGLWASTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKKDKQ*
Ga0066905_1013879072	3300005713	Tropical Forest Soil	MNFWGAGLLALVLAIQEKPIITGDCSDENLNRLAITHGRYLKSLWVSTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0066905_1016458752	3300005713	Tropical Forest Soil	MNFWAAGLLAVVLAIQEKPIITGDCSDENINRLAISHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0066903_1022355612	3300005764	Tropical Forest Soil	MNFWAAGLFALVLAIQEKPIITGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0066903_1026367032	3300005764	Tropical Forest Soil	MKFWAAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYIRQCDGKKEK*
Ga0066903_1027053131	3300005764	Tropical Forest Soil	GLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWASTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEK*
Ga0066903_1061224531	3300005764	Tropical Forest Soil	MNFWAAGLFALVLAIQEKPTITGDCSDENINRLAISHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0075417_100371994	3300006049	Populus Rhizosphere	MNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAIAHGRYLKSLWASTEINTGQDLAFVIQEEDKTLRQLYGYMRQCDGKK
Ga0075432_103597082	3300006058	Populus Rhizosphere	IQEKPIITGDCSDENLNRLAIAHGRYLKSLWASTEINTGQDLAFVIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0075427_100515142	3300006194	Populus Rhizosphere	MNFWGAGLLAAVLAMQEKPIIAGDCSDENLNRLAIAHGRYLKSLWASTEINTGQDLAFVIQEEDKTLRQLYGYMRQCDGKKETQ*
Ga0075428_1001975293	3300006844	Populus Rhizosphere	MNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAIAHGRYLKSLWASTEINTGQDLAFVIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0075430_1000655264	3300006846	Populus Rhizosphere	MNFWGAGLLAAVLAMQEKPIIAGDCSDENLNRLAIAHGRYLKSLWASTEINTGQDLAFVIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0075430_1017713012	3300006846	Populus Rhizosphere	VLAIQEKPIITGDCSDENLNRLAITHGRYLKSLWVSTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0075425_1003286041	3300006854	Populus Rhizosphere	KTDGNRKMNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAIAHGRYLKSLWASTEINTGQDLAFVIQEEDKTLRQLYGYMRQCDGKKETQ*
Ga0099791_101991351	3300007255	Vadose Zone Soil	MNLWGAGLLAVVLAIQEKPIITGDCSDENLNRLAITHGRYLKSLWASTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0111539_104250912	3300009094	Populus Rhizosphere	MNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAIAHGRYLKSLWASTEINTGQDLAFVIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0075418_102749713	3300009100	Populus Rhizosphere	MNFWGAGLLAAVLAMQEKPIIAGDCSDENLNRLAIAHGRYLKSLWASTEINTGQDLAFVIQEEDKTLRQLYGYMRQC
Ga0114129_114928731	3300009147	Populus Rhizosphere	MNFWGAGLLAAVLAMQEKPIIAGDCSDENLNRLAIAHGRYLKSLWASTEINTGQDLAFVIQEEDKTLRQLYGYMRQCDGKKEK
Ga0105092_102026472	3300009157	Freshwater Sediment	WGAGLLAVVLAIQEKPTISGDCSDENLNWLAITHGRYLKSLWASTEINTGQDLAVLIQEEDKTLRQLYGYMRECNGKKEKQ*
Ga0105092_102984092	3300009157	Freshwater Sediment	MNFWGVGLLAVVLAIQEKPIITGDCSDENLNRLAITHGRYLKSLWVSTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0105340_14957552	3300009610	Soil	MRALLEENGSSMDTRRKKTDRNRKRNFWGVGLLAAVLAIQEKPIIAGDCSDENLNRLAISHGRYLKNLWASAEINTGQDLAILIQEEDKTLRQLYGYM
Ga0126374_117723922	3300009792	Tropical Forest Soil	MNFWAAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWATTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEK*
Ga0126380_104219232	3300010043	Tropical Forest Soil	MNFWAAGLLAVVLAIQEKPIIAGDCSDENINRLAITHGRYLKSLWATTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEK*
Ga0126380_114134652	3300010043	Tropical Forest Soil	NRKMNFWGAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKGLWASTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0126380_117306691	3300010043	Tropical Forest Soil	KMNFWAAGLLAVVLAIQEKPIITGDCSDENINRLAISHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0126384_114242991	3300010046	Tropical Forest Soil	MNFWAAGLFALVLAMQEKPIITGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0126384_116661501	3300010046	Tropical Forest Soil	MKFWAAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWASTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEK*
Ga0126384_117671901	3300010046	Tropical Forest Soil	AGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0126384_120162202	3300010046	Tropical Forest Soil	FALILAIQEKPIITGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0126382_102776313	3300010047	Tropical Forest Soil	MKFWAAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWASTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0126382_106982162	3300010047	Tropical Forest Soil	LFALVLAMQERPIITGDFSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0126382_107146832	3300010047	Tropical Forest Soil	MNFWAAGLFALVLAIQEKPIITGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYIRQCDG
Ga0126382_110283802	3300010047	Tropical Forest Soil	MNFWGAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWTSTEINTGQDLAVLIQEEDKTLRQLYGYIRQCDGKKEK*
Ga0126373_131938602	3300010048	Tropical Forest Soil	VLAIQEKPIISGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0126370_117482001	3300010358	Tropical Forest Soil	MKFWAAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWATTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKREKQ*
Ga0126376_104758241	3300010359	Tropical Forest Soil	MKFWAAGLLAVVLAIQEKPTITGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKK
Ga0126376_114539141	3300010359	Tropical Forest Soil	MNFWAAGLLAMVLAIQEKPIITGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0126372_104187312	3300010360	Tropical Forest Soil	MTKETDRNRKMNFWAAGLLAVVLAIQEKPTITGDCSDENINRLAITHGRYLKTLWATTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKREKQ*
Ga0126372_108903931	3300010360	Tropical Forest Soil	MNFWAAGLLAMVLAIQEKPIISGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0126378_111648511	3300010361	Tropical Forest Soil	MKFWAAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWASTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKREKQ*
Ga0126377_111540551	3300010362	Tropical Forest Soil	PIITGDCSDENINRLAITHGRYLKSLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0126377_114428081	3300010362	Tropical Forest Soil	QEKPIITGDCSDENINRLAITHGRYLKSLWASTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0126377_115674432	3300010362	Tropical Forest Soil	RNRKMSFWGAGLLALVLAIQERPIITGDCSDQNLNWLAITHGRYLKSLWASTEINNGQDLAILIQEEDKTLRQLYGYVRQCDGKKEK*
Ga0126379_100420292	3300010366	Tropical Forest Soil	MNFWAAGLLAMVLAIQEKPIITGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0126379_109292762	3300010366	Tropical Forest Soil	LLAVVLAIQEKPIITGDCSDENINRLAISHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ*
Ga0126381_1018538192	3300010376	Tropical Forest Soil	FWAAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWTMTEVNTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEK*
Ga0126381_1029197552	3300010376	Tropical Forest Soil	MNFWGAALLAMVLAIQEKPIITGDCSDENINRLAISHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQL*
Ga0126383_104326741	3300010398	Tropical Forest Soil	FWAAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0126383_136279011	3300010398	Tropical Forest Soil	MNFWVAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKREKQ*
Ga0137372_100552083	3300012350	Vadose Zone Soil	MDTRRKKTDRNRKRNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGLYLKSLWASTEIKTGQDLAFLIQEEDKTLRQLYGYMRECDGKKEKQ*
Ga0137366_110154472	3300012354	Vadose Zone Soil	MDTRRKKTDRNRKRNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGLYLKSLWASIEIKTGQDLAFLIQEEDKTLR
Ga0137385_116255222	3300012359	Vadose Zone Soil	MDTRRKKTDRNRKRNFWGAGLLAAVLAIQEKPIITGDCSDENLNRRAISHGVYLKSLWASTEIKTGQDLAFLIQEEDKTLRQLYGYMRECDGKKE
Ga0137397_101041613	3300012685	Vadose Zone Soil	MNFWGAGLLAVVLAIQEKPINTGDCSDENLNRLAITHGRYLKSLWASTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0137404_101802813	3300012929	Vadose Zone Soil	MNFWGAGLLATVLAIQEKPIITGDCSDENLNRLAITHGRYLKSLWASTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0137404_113674901	3300012929	Vadose Zone Soil	MDTRRKKTDRNRKMNFWGAGLLAAVLAIQGKPIITGDCSDENLNRLAISHGLYLKSLWASIEIKTGQDLAFLIQEEDKTLRQLYGYMRECDGKKEKQ*
Ga0137407_100637081	3300012930	Vadose Zone Soil	MNSWGAGLLAVVLAIQEKPIITGDCSDENLNRLAITHGRYLKSLWASTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0137407_122789731	3300012930	Vadose Zone Soil	MNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGLYLKSLWASIEIKTGQDLAFLIQEEDKTLRQLYGYMRECDGKKEKQ*
Ga0137410_113356151	3300012944	Vadose Zone Soil	MDTRRKKTDRNRKRNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGLYLKSLWASIEIKTGQDLAFLIQEEDKTLRQLYGYMRECDGKKEKQ*
Ga0126375_109088682	3300012948	Tropical Forest Soil	MNFWGAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWASTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0126375_117989932	3300012948	Tropical Forest Soil	LLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWATTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEK*
Ga0126375_118915981	3300012948	Tropical Forest Soil	GLLAMVLSIQEKPIISGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYIRQCDGKKEK*
Ga0137403_101618952	3300015264	Vadose Zone Soil	MDTRRKKTDRNRKMNFWGAGLLAAVLAIQGKPIITGDCSDENLNRLAISHGLYLKSLWASTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ*
Ga0182036_110044051	3300016270	Soil	MKFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGLYLKSLWISTEIKNGQDLALLIQEEDKTLRQLYGYMRQCDGKNEKH
Ga0182041_115313892	3300016294	Soil	MKFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGLYLKSLWISTEIKNGQDLAVLIQEEDKTLRQLYGYMRQCDGKNEKH
Ga0184608_100213972	3300018028	Groundwater Sediment	MDTRRKKTDRNRKRNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGLYLKSLWASIEIKTGQDLAFLIQEEDKTLRQLYGYMRECDGKKEKQ
Ga0184638_10232403	3300018052	Groundwater Sediment	MDTRRKKTDRNRKRNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGRYLKSLWASIEIKTGQDLAFLIQEEDKTLRQLYGYMRECDGKKEKQ
Ga0184626_100434062	3300018053	Groundwater Sediment	MNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAIAHGRYLKSLWASTEIMTGQDLALLIQEEDKTLRQLYGYMRQCDGKKEKQ
Ga0184626_101689032	3300018053	Groundwater Sediment	MDTRRKKTDRNRKRNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGRYLKSLWASIEIKTGQDLAFLIQEEDKTLRQLYGYMRQCDGKKEKQ
Ga0184611_13301332	3300018067	Groundwater Sediment	MDTRRKKTDRNRKRNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGRYLKSLWASIEIKTGQDLAFLIQEEDKTLRQLYGYMRQCD
Ga0184625_101949512	3300018081	Groundwater Sediment	MDTRRKKTDRNRKRNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGRYLKSLWASIEIKTGQDLAFLIQEEDKTLRQLYGYMRECDGKKE
Ga0184629_106882742	3300018084	Groundwater Sediment	MDTRRKKTDRNRKRNFWGAGVLAAVLAIQEKPIITGDCSDENLNRLAISHGLYLKSLWASIEIKTGQDLAFLIQEEDKTRRQLYGYMRECDGKKEKQ
Ga0126371_136348591	3300021560	Tropical Forest Soil	MNFWAAGLFALVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWASTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKREKQ
Ga0209466_11230521	3300027646	Tropical Forest Soil	MNFWAAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKSLWASTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKNQKQ
Ga0209799_10002088	3300027654	Tropical Forest Soil	FWAAGLLAVVLAIQEKPIITGDCSDENINRLAISHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYMRQCDGKKEKQ
Ga0209799_10298631	3300027654	Tropical Forest Soil	FWAAGLLAVVLAIQEKPIITGDCSDENINRLAITHGRYLKTLWSSTEINTGQDLAVLIQEEDKTLRQLYGYIRQCDGKKEK
Ga0209814_100032156	3300027873	Populus Rhizosphere	MNFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAIAHGRYLKSLWASTEINTGQDLAFVIQEEDKTLRQLYGYMRQCDGKKEKQ
Ga0247654_10410662	3300030552	Soil	MNFWGAGLLALVLAIQEKPIITGDCSDENLNRLAITHGRYLKSLWVSTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ
Ga0247647_11261881	3300030570	Soil	TRFLSGDCSDENLNRLAITHGRYLKSLWVSTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ
Ga0247644_10757642	3300030576	Soil	LALVLAIQEKPIITGDCSDENLNRLAITHGRYLKSLWVSTEKNTCQDLAILNHEEDKTLRQLYGYMRQCDGKNQKQ
Ga0170820_156235311	3300031446	Forest Soil	AIQEKPIITGDCSDENFNRLAISHGLYLKSLWASTEIKTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQKQ
Ga0307469_105174092	3300031720	Hardwood Forest Soil	MNFWGAGLLAVVLAIQEKPIITGDCSDENLNRLAITHGRYLKSLWVSTEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNQQQ
Ga0306925_119949851	3300031890	Soil	MKFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGLYLKSLWISTEIKNGQDLAVLIQEEDKTLRQLYGYMRQCDG
Ga0310916_111801652	3300031942	Soil	MKFWGAGLLAAVLAIQEKPIITGDCSDENLNRLAISHGLYLKSLWISTEIKNGQDLAVLIQEEDKTLRQL
Ga0364941_102637_93_419	3300034417	Sediment	MRALLEENGSSMDTRRKKTDRNRKRNFWGVGLLAAVLAIQEKPIIAGDCSDENLNRLAISHGRYLKNLWASAEINTGQDLAILIQEEDKTLRQLYGYMRQCDGKNEKQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101477

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences