Basic Information | |
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Family ID | F101562 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 102 |
Average Sequence Length | 66 residues |
Representative Sequence | MERQGRLNSQQLKDLSDELAALMKQQSDARLTEVFVRMTQQEIGAFDLRAQRISKIHVILSEHDAKR |
Number of Associated Samples | 68 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 72.55 % |
% of genes near scaffold ends (potentially truncated) | 23.53 % |
% of genes from short scaffolds (< 2000 bps) | 74.51 % |
Associated GOLD sequencing projects | 60 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.67 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (50.980 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.353 % of family members) |
Environment Ontology (ENVO) | Unclassified (52.941 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (84.314 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 54.74% β-sheet: 0.00% Coil/Unstructured: 45.26% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.67 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Bog Forest Soil Peatland Iron-Sulfur Acid Spring Soil Surface Soil Soil Soil Forest Soil Hardwood Forest Soil Forest Soil Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12635J15846_1000064131 | 3300001593 | Forest Soil | MYYFASGEWFVERQGRLNSQQLKDLSDELAALTKQQSDARLTEIFIRMTEAEIKAFDLRKERISRIHIILSEHDAKR* |
JGI12635J15846_100376695 | 3300001593 | Forest Soil | VERQGRLNSHQLRDLSDELAALTKQQSDARLREVFIPMSNKEIEAFDLRTQRISKIHVILSENDTKRR* |
JGI12635J15846_100539364 | 3300001593 | Forest Soil | VERQGRLDAQQLKDLSDELAALTKQQSDARLLEVFVRMSQQEIKVFDLRTQRISKIHVILSEHDAKR* |
JGIcombinedJ26739_1002501543 | 3300002245 | Forest Soil | VAQGRLNSQQLKDLSDELASLTKQQSDARLTEVFIRMSAQEIRAFDLRTERISKIHAILSEHDAKR* |
Ga0062385_101029921 | 3300004080 | Bog Forest Soil | MVRLNSQQLKDLSDELVILSKQQSDARLLEVFIHMNEPEIKAFDVRKERISQIHVILSEHDAKR* |
Ga0062385_103036243 | 3300004080 | Bog Forest Soil | MGRLDPQQLKELSDELAFLTKQQSDARLMEVFVGMTKQEIDDFDLRTQRISRIHVLLSDHDAKR* |
Ga0062384_1004734922 | 3300004082 | Bog Forest Soil | MVRLNSQQLKDLSDELVILSKQQSDARLLEVFIHMNEPEIKAFDLRKERISQIHVILSEHDAKR* |
Ga0062387_1014431712 | 3300004091 | Bog Forest Soil | MSRLNQKQLRDLSDELAALSKQQSDARLLEVYVRMSPQEMEAFDLRTQRISHIHIILSEHDAKR* |
Ga0058888_10998861 | 3300004102 | Forest Soil | VARRRKLNLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR* |
Ga0062595_1019068212 | 3300004479 | Soil | LRDLRDELARLMKQQSDARLTEVFVRMTRQEIEAFDLRTQRISQIHVLLREHDAKR* |
Ga0070735_1000034952 | 3300005534 | Surface Soil | VGRQARLSSQKLKALSDELSAIIKQQYDARLTEVYVRMTPQEISAFDLQKERISQIHVILSEHDAKR* |
Ga0070735_105995492 | 3300005534 | Surface Soil | VERQGRLNSQQLGDLSDELAALTKQQSGARLTEVFVRMTPEEIRAFDLRKERISRIHVILSEHDTKR* |
Ga0070731_100306195 | 3300005538 | Surface Soil | MPRLNSQQLSDLSDELVALNKQQSDARKTEVFIRMTQAEIEALDLRQERISKIHVILSEHDAKR* |
Ga0070731_104262382 | 3300005538 | Surface Soil | MEPGRLNPQQLKHLSDELANLTKQQSDARLTEEFVRMTPAEIKAFDLRAERISKIHVILSEHDAKR* |
Ga0070733_103911072 | 3300005541 | Surface Soil | LTRLNSQQLRDLSDELAALIKQQSDARKMEVFIRMNQEEIEAFDLRQERISKIHVILSEHDAKR* |
Ga0070761_100458757 | 3300005591 | Soil | VKRRGRLNSKQLQDLSDELAALTKRQFDARMLEVFIPMSKKEIEAFDLRTQRISHIHVLLSEHDAKR* |
Ga0070761_104983781 | 3300005591 | Soil | VARQRRIDSQQVKDLTDELAVLMKQQSDARMTEVFIRMTAEESAAFDLRAQRISRIHVLLSEHDVKR* |
Ga0070762_100538062 | 3300005602 | Soil | VARQGRLNEVQLKELSDELATLTKQQYEARLLEVFIPMSKKEIQAFDLRTERISKIHVLLAEHDAKQ* |
Ga0070763_103587122 | 3300005610 | Soil | VARQGRLNEVQLKELSDELATLTKQQYEARLLEVFIPMSKKEIQAFDLRTERISKIHVLLAEHDAKR |
Ga0070764_100215716 | 3300005712 | Soil | VARQGRLNEKQLKELSDELSALTKQQYEARLLEVFIPMSKKEIEAFDLRTGRISQIHVILSEHDAKR* |
Ga0070764_102423493 | 3300005712 | Soil | MGQQGRLNSQQLRDLSDELAALTKQQSDARLTEVFIRMTTEEINAFNRRRERISQIYVLLGEHDAKR* |
Ga0070764_103223082 | 3300005712 | Soil | LTREGRLTSQQLKDLSDELAALSKQQSDARLLEPFIAMTKAEVEAFDLRAARISQIYVMLSEHDSKR* |
Ga0070764_106222253 | 3300005712 | Soil | NELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR* |
Ga0070765_1007448753 | 3300006176 | Soil | MEPRGRLNSEQLKDLSDELATLMKQQSDARLLEVFIHMTQQEIRAFDLRTERISKIHIILSEHDAKR* |
Ga0070765_1017533031 | 3300006176 | Soil | VARQGRLNEVQLKELSDELATLTKQQYEARLLEVFIPMSKKEIQAFDLRTERISKIHV |
Ga0073928_100498127 | 3300006893 | Iron-Sulfur Acid Spring | MARLNSQQLNDLSNELAALAKQQSDARLDEVFIRMTEQEIKAFDLRKERISKIYVILNEHDAKR* |
Ga0102924_12089781 | 3300007982 | Iron-Sulfur Acid Spring | MSRLDPQQLRDLSDELAGLMKQQSDARLTEVFVRMTRQEIEAFDLRTQRISQIHIILNEHDAKR* |
Ga0116129_10054471 | 3300009633 | Peatland | LIINLEVNVEQQGRLNTLQLRDLSDELASLMKQQSDARLLEVFIRMNEKEIRAFDRRSDRISKIHIILREHDTKR* |
Ga0150983_108444511 | 3300011120 | Forest Soil | LVAPRQGRLNERQLKALSDELATLMKQQSDARLTDVFIRMSQKEIDAFDLRQERISKIHVILSEHDAKR* |
Ga0210407_106841813 | 3300020579 | Soil | MEPQGRLNSQQLKDLSDELAALMKQQSDARLTEVYVRMTQQEIKAFDLRKERISKIHVILSEHDAKR |
Ga0210403_101309703 | 3300020580 | Soil | VARRRKLNLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR |
Ga0210399_108196713 | 3300020581 | Soil | MEPRGRLNSQQLKDLSDELATLMKQQSDARLLEVFIHMTQQEIRAFDLRTERISKIHVILSEHDAKR |
Ga0210395_100104134 | 3300020582 | Soil | VARQGRLNEVQLKELSDELATLTKQQYEARLLEVFIPMSKKEIQAFDLRTERISKIHVLLAEHDAKQ |
Ga0210401_100603532 | 3300020583 | Soil | MERQGRLNSQQLKDLSDELAALMKQQSDARLTEVFVRMTQQEIGAFDLRAQRISKIHVILSEHDAKR |
Ga0210401_102430412 | 3300020583 | Soil | VAPRQGRLNERQLKALSDELATLMKQQSDARLTDVFIRMSQKEIDAFDLRQERISKIHVILSEHDAKR |
Ga0210401_104309781 | 3300020583 | Soil | VERQGRLTTQQLKDLNDELVILTKQQSDARLTEVFIRMNQKEIDAFDLREERISKIHVLLSEHDTKL |
Ga0210404_107709051 | 3300021088 | Soil | VARQGRLNEVQLKELSDELATLTKQQYEARLLEVFIPMSKKEIQAFDLRTERISKIHDA |
Ga0210404_108527271 | 3300021088 | Soil | MERQGRLTSQQLKELSDELAALMKQQSDARLTEVYIRMTKDEIQAFDLRAERISKIHVILSEHDAKR |
Ga0210388_101923011 | 3300021181 | Soil | MSRLNAQQLRDLSDELTVLTKQQSEARLLEVFIRMNEQEVKAFELRARRISQIHVILSEHDAKRKPHIPLA |
Ga0210388_104417061 | 3300021181 | Soil | MGQQGRLNSQQLRDLSDELAALTKQQSDARLTEVFIRMTTEEINAFNLRRERISQIHVLLGEHDAKR |
Ga0210385_102530111 | 3300021402 | Soil | MSVRYLNSQQLKELSDELASLAKQQSDARQLEIFVRMNPHEIEAFDLRTQRISKIHIMLSEHDAKRQTYMNSQQH |
Ga0210385_103199331 | 3300021402 | Soil | VARQSRLNSQQLNDLSDELAALLKQQADARLMEVFIPMSEQEIKAFDLRTERISKIHVILSEHDAKR |
Ga0210389_103700983 | 3300021404 | Soil | VARRRKLNLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEPDARRQL |
Ga0210387_102361442 | 3300021405 | Soil | VKRQSRLNSQQLKDLNDELVILTKQQSDARLTEVFIRMNQKEIDAFDLRQERISKIHVLLSEYDAKR |
Ga0210387_111441962 | 3300021405 | Soil | MSRFNAQQLRDLSDELTVLKKQQSEARLLEVFIRMNEQEVEAFELRAQRISQIHVILSEHDANRKPHIPLA |
Ga0210383_1000414815 | 3300021407 | Soil | VERPGRLNSQQLKDLSDELAALTKQQSDARLLEVFVRMSEAEIKAFDLRTQRISRIHVLLSEHDSRR |
Ga0210383_101658422 | 3300021407 | Soil | MKHLGTATTIAQRETKPLCLGERFVVRQGRLNEKQLKVLSDELATLMKEQYEARLLEVFIPMSKKEIEAFDLRTEGISRIHVILSEHDANR |
Ga0210383_111526081 | 3300021407 | Soil | MRLNSQQLKDLSDELFALMKQQTDARSTEVFVRMTSEEIRAFDLRAERISKIHAVLGEHDAKGQSAAPRH |
Ga0210383_112268821 | 3300021407 | Soil | PCLGERLVAPRQGRLNERQLKALSDELATLMKQQSDARLTDVFIRMSQKEIDAFDLRQERISKIHVILSEHDAKR |
Ga0210383_113109032 | 3300021407 | Soil | VKRRGRLNSKQLQDLSDELAALTKRQFDARMLEVFIPMSKKEIEAFDLRTQRISHIHVLLSEHDAKR |
Ga0210394_105130781 | 3300021420 | Soil | MEPQGRLNSQQLKDLSDELAALMKQQSDARLTEVYVRMTQQEIKAFDLRKERISKIHVILSEHDA |
Ga0210391_100034573 | 3300021433 | Soil | VARQGRLNEKQLKELSDELSALTKQQYEARLLEVFIPMSKKEIEAFDLRTGRISQIHVILSEHDAKR |
Ga0210390_106435761 | 3300021474 | Soil | NLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR |
Ga0210390_108991122 | 3300021474 | Soil | QWETNPPCLGERLVAPRQGRLNERQLKALSDELATLMKQQSDARLTDVFIRMSQKEIDAFDLRQERISKIHVILSEHDAKR |
Ga0210390_115869951 | 3300021474 | Soil | VARRRKLNLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQI |
Ga0210409_106931342 | 3300021559 | Soil | MERQDRLNSQQLKDLSDELAALMKQQSDARLTEVFVRMTQQEIGAFDLRAQRISKIHVILSEHDAKR |
Ga0242646_10387212 | 3300022502 | Soil | KLNLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR |
Ga0242659_10505541 | 3300022522 | Soil | VARRRKLNLQELNELTGELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR |
Ga0212123_100194893 | 3300022557 | Iron-Sulfur Acid Spring | MARLNSQQLNDLSNELAALAKQQSDARLDEVFIRMTEQEIKAFDLRKERISKIYVILNEHDAKR |
Ga0222756_10293561 | 3300022709 | Soil | LNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR |
Ga0242673_10209673 | 3300022716 | Soil | QGERLVARQGRLNEVQLKELSDELATLTKQQYEARLLEVFIPMSKKEIQAFDLRTERISKIHVLLAEHDAKQ |
Ga0242657_12253761 | 3300022722 | Soil | ARRRKLNLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR |
Ga0242665_102221631 | 3300022724 | Soil | VARRRKLNLQELNELTYELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR |
Ga0208725_10535701 | 3300027158 | Forest Soil | KQLQDLSDELAALTKRQFDARMLEVFIPMSKKEIEAFDLRTQRISHIHVLLSEHDAKR |
Ga0209008_10269561 | 3300027545 | Forest Soil | VERQGRLNSHQLRDLSDELAALTKQQSDARLREVFIPMSNKEIEAFDLRTQRISKIHVILSEHDAKRR |
Ga0209008_10676042 | 3300027545 | Forest Soil | VGQGRLNSQQLKDLSDELATLAKQQSDARLTEVFIRMNKQEIEAFDLRKERISKIYANLSEHDAKRIAG |
Ga0209222_10096881 | 3300027559 | Forest Soil | VERQGRLNSQQLKDLSDELAALTKQQSDARLTEIFIRMTEAEIKAFDLRKERISRIHIILSEH |
Ga0209115_11428212 | 3300027567 | Forest Soil | LNSQQLKDLSDELASLTKQQSDARLTEVFIRMSAQEIRAFDLRTERISKIHAILSEHDAK |
Ga0209525_10142563 | 3300027575 | Forest Soil | VAQGRLNSQQLKDLSDELASLTKQQSDARLTEVFIRMSAQEIRAFDLRTERISKIHAILSEHDAKR |
Ga0209525_10459712 | 3300027575 | Forest Soil | MYYFASGEWFVERQGRLNSQQLKDLSDELAALTKQQSDARLTEIFIRMTEAEIKAFDLRKERISRIHIILSEHDAKR |
Ga0209329_11240121 | 3300027605 | Forest Soil | MGRLNSQQIKDLSDELVALSKQQSDARLTEVFIRMTTQEIEAFDLRAERISKILGILGEH |
Ga0209221_10245813 | 3300027609 | Forest Soil | VERQGRLNSQQLKDLSDELAALTKQQSDARLTEIFIRMTEAEIKAFDLRKERISRIHIILSEHDAKR |
Ga0209420_100098112 | 3300027648 | Forest Soil | VERQGRLDAQQLKDLSDELAALTKQQSDARLLEVFVRMSQQEIKVFDLRTQRISKIHVILSEHDAKR |
Ga0209333_10115641 | 3300027676 | Forest Soil | VERQGRLNSHQLRDLSDELAALTKQQSDARLREVFIPMSNKEIEAFDLRTQRISKIHVILSENDTKRR |
Ga0209139_100408302 | 3300027795 | Bog Forest Soil | MSRLNQKQLRDLSDELAALSKQQSDARLLEVYVRMSPQEMEAFDLRTQRISHIHIILSEHDAKR |
Ga0209274_102925932 | 3300027853 | Soil | VARQRRIDSQQVKDLTDELAVLMKQQSDARMTEVFIRMTAEESAAFDLRAQRISRIHVLLSEHDVKR |
Ga0209693_104179321 | 3300027855 | Soil | VARRRKLNLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDA |
Ga0209167_102645601 | 3300027867 | Surface Soil | LTRLNSQQLRDLSDELAALIKQQSDARKMEVFIRMNQEEIEAFDLRQERISKIHVILSEHDAKR |
Ga0209579_100415553 | 3300027869 | Surface Soil | MPRLNSQQLSDLSDELVALNKQQSDARKTEVFIRMTQAEIEALDLRQERISKIHVILSEHDAKR |
Ga0209579_103788591 | 3300027869 | Surface Soil | VTRLNSQQLHDLSNELAVLIKQQSDARLMEVLIRMNQAEIEAFDLRQERISKIHVILSEHDAKR |
Ga0209579_106913291 | 3300027869 | Surface Soil | MEPGRLNPQQLKHLSDELANLTKQQSDARLTEEFVRMTPAEIKAFDLRAERISKIHVILSEHDAKR |
Ga0209169_100690551 | 3300027879 | Soil | VARQGRLNEVQLKELSDELATSTKQQYEARLLEVFIPMSKKEIQAFDLRTERISKIHVLLAEHDAKQ |
Ga0209006_1000327812 | 3300027908 | Forest Soil | MRLSPGQLQDLSDELAALTKQQSDARMTEVFIPMSAAEIEAFDRRKERISRIYVILSNHDAKR |
Ga0209168_104171941 | 3300027986 | Surface Soil | VERQGRLNSQQLGDLSDELAALTKQQSGARLTEVFVRMTPEEIRAFDLRKERISRIHVILSEHDTKR |
Ga0308309_100210362 | 3300028906 | Soil | VARQGRLNEKQLKELSDELSALTKQQYEARLLEVFIPMSKEIEAFDLRTGRISQIHVILSEHDAKR |
Ga0308309_100708144 | 3300028906 | Soil | MEPRGRLNSEQLKDLSDELATLMKQQSDARLLEVFIHMTQQEIRAFDLRTERISKIHIILSEHDAKR |
Ga0308309_111796061 | 3300028906 | Soil | MSRLTAQQLRDLSDELIALTKQQSEARLLEVFIRMNEQEVKAFELRAQRISQIHVILSEHDAKRELHILPP |
Ga0170824_1265268241 | 3300031231 | Forest Soil | MLGHQGRLNPQELKVLSDELATLMKQQSDARLTEVYVRMTRQEIEAFDLRTQRISKIHVILSEHDAKR |
Ga0310686_1040505912 | 3300031708 | Soil | MGRLNPQRLKELSDELASLAKQQYEARQTEVFFRMTKDEIQAFDARKARISQIHILLNAHDDQR |
Ga0310686_1061526772 | 3300031708 | Soil | MGRQGRLNTQQLKELSDELAALSKQQYDARQNEIFFRMTEEEIKAFDLRKERISKIHVTLSEHDTKR |
Ga0310686_1075487352 | 3300031708 | Soil | VARQGRLNEKQLKELSDELATLMNQQYEARLLEVFIPMSKKEIEAFDLRTERVSKIHVILSEHDAKR |
Ga0307476_101567533 | 3300031715 | Hardwood Forest Soil | VEGQGRLNSKQLTDLSDELVALMKQQSDARLTEVYVRMTPQEIKAFDLRTERISQIYVLLSEHDAKR |
Ga0307476_101802655 | 3300031715 | Hardwood Forest Soil | VAQQRRLNSQQLKDLNDELSALMKQQHDARLTEVFVRMTPQEIKAFDLRTERISKIHVILSEHDA |
Ga0307474_100264315 | 3300031718 | Hardwood Forest Soil | VTRRLNSQQLNELSDELASLMKQQSDARLMEVFVRMSEQEIKAFDLRTARISQIHVILSEHDAKR |
Ga0307474_101043582 | 3300031718 | Hardwood Forest Soil | MGQQGRLNSQQLRDLSDELAALTKQQSDARLTEVFIRMTTEEINAFNRRRERISQIYVLLGEHDAKR |
Ga0307475_107248661 | 3300031754 | Hardwood Forest Soil | FVTRRLNSQQLNELSDELASLMKQQSDARLMEVFVRMSEQETKAFDLRTARISHIHVILSEHDAKR |
Ga0307473_106420561 | 3300031820 | Hardwood Forest Soil | MADPKSRLNSQQLKELSDELASLGEQQCVARQTEMFIRMTPQEIEAFDLRTQRISKIHIMLSEHDAKR |
Ga0307478_103835303 | 3300031823 | Hardwood Forest Soil | MPRLNSQQLSDLSDELVALNKQQFDARKTEVFIRMTQAEIEAFDLRQERISKIHVILGEHDAKR |
Ga0307478_110944981 | 3300031823 | Hardwood Forest Soil | VARLNSQQLNDLSDELSALIKQQSDARLMEVFIRMTKAEIEAFDLRQERISKIHVILSEHDAKR |
Ga0307479_102325434 | 3300031962 | Hardwood Forest Soil | VAQEGRLTSQQLKDLSDELSALMKQQNDARLTEVFVRMTPHEVKAFDLRTDRISRIHVILSEHDAKR |
Ga0307479_102663131 | 3300031962 | Hardwood Forest Soil | VAHRLNSQQLNELSDELATLMKQQSDARLMEVFVRMSEQETKAFDLRTARISQIHVILSEHDAKR |
Ga0307471_1004621102 | 3300032180 | Hardwood Forest Soil | MADPKGRLNSQQLKELSDELASLGEQQSDARQTEMFIRMTPQEIEAFDLRTQRISKIHIMLSEHDAKR |
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