Metagenome / Metatranscriptome Family F101609

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101609
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	44 residues
Representative Sequence	FGVISFELFGQLHNVVAEPPAGRDAFFAECIRRWITFTAIT
Number of Associated Samples	89
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.92 %
% of genes near scaffold ends (potentially truncated)	88.24 %
% of genes from short scaffolds (< 2000 bps)	91.18 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.549 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.314 % of family members)
Environment Ontology (ENVO)	Unclassified (30.392 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.216 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.19% β-sheet: 20.29% Coil/Unstructured: 56.52%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF08450	SGL	53.92
PF00293	NUDIX	5.88
PF02720	DUF222	3.92
PF00920	ILVD_EDD	2.94
PF12706	Lactamase_B_2	2.94
PF07690	MFS_1	1.96
PF00155	Aminotran_1_2	0.98
PF03988	DUF347	0.98
PF00884	Sulfatase	0.98
PF01230	HIT	0.98
PF13520	AA_permease_2	0.98
PF01136	Peptidase_U32	0.98
PF07592	DDE_Tnp_ISAZ013	0.98
PF01636	APH	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	53.92
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	53.92
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	5.88
COG0826	23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family	Translation, ribosomal structure and biogenesis [J]	0.98
COG4705	Uncharacterized membrane-anchored protein	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.55 %
Unclassified	root	N/A	27.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.55 %
Unclassified	root	N/A	27.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.55 %
Unclassified	root	N/A	27.45 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	59.80 %
Unclassified	root	N/A	27.45 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	45.10 %
Unclassified	root	N/A	27.45 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	29.41 %
Unclassified	root	N/A	27.45 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.98 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.98 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.94 %
Sphingobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia	0.98 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.98 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.98 %
Sphingobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	0.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.94 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.98 %
Sphingobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae	0.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.98 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.94 %
Mucilaginibacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Mucilaginibacter	0.98 %
Pseudonocardia asaccharolytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia asaccharolytica	0.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.98 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.94 %
Mucilaginibacter gotjawali	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Mucilaginibacter → Mucilaginibacter gotjawali	0.98 %
Pseudonocardia asaccharolytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia asaccharolytica	0.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.98 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459017\|G14TP7Y01CQ05C	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	626	Open in IMG/M
3300004091\|Ga0062387_101773131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia asaccharolytica	503	Open in IMG/M
3300005172\|Ga0066683_10784242	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005343\|Ga0070687_100915723	All Organisms → cellular organisms → Bacteria → Terrabacteria group	630	Open in IMG/M
3300005434\|Ga0070709_10389212	Not Available	1038	Open in IMG/M
3300005437\|Ga0070710_10531510	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300005439\|Ga0070711_101578757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	573	Open in IMG/M
3300005535\|Ga0070684_100858847	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300005553\|Ga0066695_10699002	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300005563\|Ga0068855_101365239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	731	Open in IMG/M
3300005617\|Ga0068859_102100302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	624	Open in IMG/M
3300006050\|Ga0075028_100694300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	612	Open in IMG/M
3300006059\|Ga0075017_100315842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1157	Open in IMG/M
3300006175\|Ga0070712_101412333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	607	Open in IMG/M
3300006175\|Ga0070712_101681043	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300006175\|Ga0070712_102045579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	502	Open in IMG/M
3300006176\|Ga0070765_100134173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2189	Open in IMG/M
3300006575\|Ga0074053_11484943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
3300009092\|Ga0105250_10323432	All Organisms → cellular organisms → Bacteria → Terrabacteria group	671	Open in IMG/M
3300009098\|Ga0105245_12525393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	567	Open in IMG/M
3300009174\|Ga0105241_12357100	All Organisms → cellular organisms → Bacteria → Terrabacteria group	531	Open in IMG/M
3300009522\|Ga0116218_1132682	Not Available	1132	Open in IMG/M
3300010046\|Ga0126384_12152780	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300010047\|Ga0126382_10201831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1415	Open in IMG/M
3300010047\|Ga0126382_10699860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	850	Open in IMG/M
3300010301\|Ga0134070_10438216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	521	Open in IMG/M
3300010329\|Ga0134111_10513272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300010339\|Ga0074046_10872232	Not Available	525	Open in IMG/M
3300010343\|Ga0074044_10444533	Not Available	848	Open in IMG/M
3300010376\|Ga0126381_104263727	Not Available	554	Open in IMG/M
3300010379\|Ga0136449_101291089	Not Available	1139	Open in IMG/M
3300012200\|Ga0137382_10759389	All Organisms → cellular organisms → Bacteria → Terrabacteria group	696	Open in IMG/M
3300012285\|Ga0137370_10512936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	735	Open in IMG/M
3300012357\|Ga0137384_10051893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3395	Open in IMG/M
3300012357\|Ga0137384_10374779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1177	Open in IMG/M
3300012357\|Ga0137384_10501079	Not Available	997	Open in IMG/M
3300012363\|Ga0137390_10990724	Not Available	793	Open in IMG/M
3300012502\|Ga0157347_1003579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1399	Open in IMG/M
3300012989\|Ga0164305_10258834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1262	Open in IMG/M
3300016270\|Ga0182036_11936209	All Organisms → cellular organisms → Bacteria → Terrabacteria group	500	Open in IMG/M
3300016294\|Ga0182041_11511790	All Organisms → cellular organisms → Bacteria → Terrabacteria group	618	Open in IMG/M
3300016422\|Ga0182039_11386622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	638	Open in IMG/M
3300017926\|Ga0187807_1124502	Not Available	817	Open in IMG/M
3300017972\|Ga0187781_10765675	Not Available	700	Open in IMG/M
3300017973\|Ga0187780_11201414	Not Available	556	Open in IMG/M
3300017974\|Ga0187777_10487445	All Organisms → cellular organisms → Bacteria → Terrabacteria group	860	Open in IMG/M
3300018001\|Ga0187815_10066556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1515	Open in IMG/M
3300018001\|Ga0187815_10334889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	642	Open in IMG/M
3300018032\|Ga0187788_10536345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300018086\|Ga0187769_10743402	Not Available	742	Open in IMG/M
3300020581\|Ga0210399_10699428	All Organisms → cellular organisms → Bacteria → Terrabacteria group	833	Open in IMG/M
3300021088\|Ga0210404_10591543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	630	Open in IMG/M
3300021180\|Ga0210396_10721948	Not Available	859	Open in IMG/M
3300021181\|Ga0210388_10643251	All Organisms → cellular organisms → Bacteria → Terrabacteria group	926	Open in IMG/M
3300021401\|Ga0210393_11116824	All Organisms → cellular organisms → Bacteria → Terrabacteria group	636	Open in IMG/M
3300021407\|Ga0210383_10211419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1660	Open in IMG/M
3300021432\|Ga0210384_10881238	All Organisms → cellular organisms → Bacteria → Terrabacteria group	795	Open in IMG/M
3300021479\|Ga0210410_11350671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605	Open in IMG/M
3300024288\|Ga0179589_10445203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	597	Open in IMG/M
3300025915\|Ga0207693_10739553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	760	Open in IMG/M
3300025916\|Ga0207663_10367045	Not Available	1093	Open in IMG/M
3300025927\|Ga0207687_11559274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	567	Open in IMG/M
3300025932\|Ga0207690_10848540	All Organisms → cellular organisms → Bacteria → Terrabacteria group	756	Open in IMG/M
3300027047\|Ga0208730_1032585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	606	Open in IMG/M
3300027604\|Ga0208324_1169118	Not Available	589	Open in IMG/M
3300027812\|Ga0209656_10046656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2474	Open in IMG/M
3300028782\|Ga0307306_10253135	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300028906\|Ga0308309_10158257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1830	Open in IMG/M
3300028906\|Ga0308309_10229326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1544	Open in IMG/M
3300031543\|Ga0318516_10617147	Not Available	619	Open in IMG/M
3300031543\|Ga0318516_10766226	All Organisms → cellular organisms → Bacteria → Terrabacteria group	546	Open in IMG/M
3300031544\|Ga0318534_10236456	Not Available	1054	Open in IMG/M
3300031640\|Ga0318555_10010223	All Organisms → cellular organisms → Bacteria	4098	Open in IMG/M
3300031668\|Ga0318542_10571881	Not Available	589	Open in IMG/M
3300031680\|Ga0318574_10023656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3030	Open in IMG/M
3300031680\|Ga0318574_10073380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1852	Open in IMG/M
3300031713\|Ga0318496_10538330	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Mucilaginibacter → Mucilaginibacter gotjawali	645	Open in IMG/M
3300031723\|Ga0318493_10328980	Not Available	828	Open in IMG/M
3300031740\|Ga0307468_100854200	Not Available	783	Open in IMG/M
3300031751\|Ga0318494_10050368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2199	Open in IMG/M
3300031765\|Ga0318554_10041257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2507	Open in IMG/M
3300031769\|Ga0318526_10077238	Not Available	1308	Open in IMG/M
3300031770\|Ga0318521_10230246	Not Available	1077	Open in IMG/M
3300031770\|Ga0318521_10679373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	625	Open in IMG/M
3300031792\|Ga0318529_10383979	Not Available	654	Open in IMG/M
3300031797\|Ga0318550_10365621	Not Available	699	Open in IMG/M
3300031797\|Ga0318550_10478866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	601	Open in IMG/M
3300031835\|Ga0318517_10211805	All Organisms → cellular organisms → Bacteria → Terrabacteria group	874	Open in IMG/M
3300031910\|Ga0306923_10954423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	935	Open in IMG/M
3300031946\|Ga0310910_11046401	Not Available	637	Open in IMG/M
3300031947\|Ga0310909_10978984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	692	Open in IMG/M
3300032009\|Ga0318563_10639040	Not Available	573	Open in IMG/M
3300032039\|Ga0318559_10104923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1254	Open in IMG/M
3300032041\|Ga0318549_10275994	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300032042\|Ga0318545_10057706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1322	Open in IMG/M
3300032055\|Ga0318575_10167949	Not Available	1096	Open in IMG/M
3300032055\|Ga0318575_10378160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	718	Open in IMG/M
3300032066\|Ga0318514_10037227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2308	Open in IMG/M
3300032205\|Ga0307472_100771458	Not Available	874	Open in IMG/M
3300032770\|Ga0335085_10228729	All Organisms → cellular organisms → Bacteria	2253	Open in IMG/M
3300032770\|Ga0335085_11235472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	792	Open in IMG/M
3300033158\|Ga0335077_10841865	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.18%
Host-Associated	Host-Associated	7.84%
Engineered	Engineered	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.31%
Plants	Host-Associated → Plants	7.84%
Aquatic	Environmental → Aquatic	6.86%
Solid Waste	Engineered → Solid Waste	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.31%
Freshwater	Environmental → Aquatic → Freshwater	4.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.90%
Sediment	Environmental → Aquatic → Sediment	1.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.96%
Roots	Host-Associated → Plants → Roots	0.98%
Grass	Engineered → Solid Waste → Grass	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.78%
Loam	Environmental → Terrestrial → Soil → Loam	13.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.80%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%
Composting	Engineered → Solid Waste → Grass → Composting	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.20%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012502	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610	Host-Associated	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027047	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4ZMR_01241680	2170459017	Switchgrass, Maize And Mischanthus Litter	MVWTNLFGVISFELFGQLRNVVAEPPAGRDAFFAESIRRWLEFTAIT
Ga0062387_1017731311	3300004091	Bog Forest Soil	MAWTGLFGLVSFELYGQLHEVVGENPGDRDAFFVECVRRWIHLVGIA*
Ga0066683_107842421	3300005172	Soil	VWTNLFGVISFELFGQLHNVVAEPPAGRDAFFAECIRRWTTFIIGLTVSS*
Ga0070687_1009157231	3300005343	Switchgrass Rhizosphere	ISFELFGQLHNVVAEPPAGRDAFFAESIRRWLEFTAITP*
Ga0070709_103892122	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	FGVISFELFGQLHNVVAEPPVGRDAFFAECIRRWITFTAIT*
Ga0070710_105315102	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	ALMVWTNLFGVISFELFGQLRNVVAEPPAGRDAFFAECIRRWITFTAIT*
Ga0070711_1015787572	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VVSFELYGQLHNVVGEESGDREAFFAECIRRWIQLTGIA*
Ga0070684_1008588471	3300005535	Corn Rhizosphere	WTNLFGVISFELFGQLHNVVAEPPADRDAFFAESIRRWLEFTAITP*
Ga0066695_106990021	3300005553	Soil	VISFELFGQLHNVVAEPPAGRDAFFAECIRHWTTFTAIT*
Ga0068855_1013652392	3300005563	Corn Rhizosphere	VISFELFGQLHNVVAEPPAGRDAFFAESIRRWLEFTAIT*
Ga0068859_1021003022	3300005617	Switchgrass Rhizosphere	WTNLFGVISFELFGQLHNVVAEPPAGRDAFFAESIRRWLEFTAIS*
Ga0075028_1006943002	3300006050	Watersheds	MVWTNLFGVVSFELYGQLHSVVGEEPGDREAFFAECIRRWIHLTGIT*
Ga0075017_1003158422	3300006059	Watersheds	VQRALMVWTNLFGVISFELYGQLHQVVGEEPGDRDTFFAECIHRWIRFTGIA*
Ga0070712_1014123331	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VISFELFGQLHNVVAEPPAGRDAFFAECIRRWITFTAIT*
Ga0070712_1016810431	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	FGVISFELFGQLHNVVAEPPAGRDAFFAASIRHWITFTAIT*
Ga0070712_1020455791	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LMVWTNLFGVISFELFGQLHNVVAEPPAGRDAFFAESIRRWLEFTAITP*
Ga0070765_1001341732	3300006176	Soil	MASITSLFGTVSFELYGQLHQVVADPPADREAFFATCIRHWTDFINLRVVP*
Ga0074053_114849431	3300006575	Soil	FGVISFELFGQLHNVVAEPPAGRDAFFAESIRRWLEFTAIS*
Ga0105250_103234322	3300009092	Switchgrass Rhizosphere	ELFGQLHNVVAEPPAGRDAFFAESIRRWLEFTAITP*
Ga0105245_125253932	3300009098	Miscanthus Rhizosphere	ALMVWTNLFGVISFELFGQLHNVVAEPPAGRDAFFAECIRRWITFTAIT*
Ga0105241_123571001	3300009174	Corn Rhizosphere	VISFELFGQLHNVVAEPPAGRDAFFAASIRHWITITAIT*
Ga0116218_11326822	3300009522	Peatlands Soil	MVWTGLFGLISFELNGQRPQVVGRNPGDRDAFFAECVRRWICFIGIG*
Ga0126384_121527801	3300010046	Tropical Forest Soil	LMVWTNLFGVISFELFGQLHSVVGEDPADRDVFFAECIRYWITFTAIGRSPSSV*
Ga0126382_102018311	3300010047	Tropical Forest Soil	VSFELFGQLHNVVADDPPDRDTFFAESIRHWLTFTGIT*
Ga0126382_106998602	3300010047	Tropical Forest Soil	VWTNLFGVISFELFGQLHNVVAEPSADRDAFFAESIRRWLTFTAIT*
Ga0134070_104382162	3300010301	Grasslands Soil	SFELFGQLHNVVAEPPAGRDAFFAECVRRWITFTAIT*
Ga0134111_105132722	3300010329	Grasslands Soil	SFELFSQLHNVVAEPPADRDAFFAECIHRWITFTAIT*
Ga0074046_108722321	3300010339	Bog Forest Soil	MAWTGLSGVISFELNGQRRQVVGRNPGDRDAFFAECVRHWICFTGLG*
Ga0074044_104445332	3300010343	Bog Forest Soil	MVWTNLFGVISFELYGQLHEVVGEGPGDRDAFFAECVRRWIQSIGI*
Ga0126381_1042637272	3300010376	Tropical Forest Soil	QRALMAWTGLFGVVSFDLYGQLHQVVGEEPADRDTFFAECIRRWLQFMNLG*
Ga0136449_1012910892	3300010379	Peatlands Soil	VVSFELYGQLHEVVEEEPGDRDAFFAECVRHWIQFVGI*
Ga0137382_107593892	3300012200	Vadose Zone Soil	FGVISFELFGQLHNVVAEPPAGRDAFFAECIRRWITFTAIT*
Ga0137370_105129362	3300012285	Vadose Zone Soil	VVSFELFGQLHNVVAEPPADRDAFFAECIRRWTTFTAIT*
Ga0137384_100518931	3300012357	Vadose Zone Soil	ALMVWTNLFGVISFELYGQLHEVVGEAPGDRDAFFTECVRRWIQFVGIA*
Ga0137384_103747793	3300012357	Vadose Zone Soil	TNLFGVISFELFGQLHNVVAEPPADRDAFFAESIRRWLAFTAIT*
Ga0137384_105010792	3300012357	Vadose Zone Soil	VSFALFGQLHNVVAEPPADRDAFFAECIRRWTTFTAIT*
Ga0137390_109907242	3300012363	Vadose Zone Soil	ISFELYGQLHNVVGEAPAARDAFFAECIRRWIHFTSIT*
Ga0157347_10035791	3300012502	Arabidopsis Rhizosphere	LFGQLHNVVAEPPGGRDAFFAECIRRWTTFTAIT*
Ga0164305_102588343	3300012989	Soil	FGQLHTVVAEPPFGRDAFFAESIRRWLEFTAITP*
Ga0182036_119362092	3300016270	Soil	VSFEVFGQLHNVVGEDPADRDAFFAECVRRWITFTPIT
Ga0182041_115117902	3300016294	Soil	VVSFEVFGQLHNVVGEDPADRDTFFAECVRRWITFTPIP
Ga0182039_113866222	3300016422	Soil	WTNLFGVVSFELFGQLHNVVAEDPADRDAFFAECVRHWITFTNLT
Ga0187807_11245023	3300017926	Freshwater Sediment	MVWTGLFGVISFELYGQLHQVVGEGPADRDTFFAECIRRWLQFMNLA
Ga0187781_107656752	3300017972	Tropical Peatland	MVWTGLFGVVSFELYGQLHQVIGDDRPDRDAFFAECVTRWITFMKLS
Ga0187780_112014141	3300017973	Tropical Peatland	ELYGQLRNVVGENPGDRGTFFAECVRRWIHFTGLA
Ga0187777_104874453	3300017974	Tropical Peatland	SFELYGQLHQVVGEEPADRDTFFAECIRRWLGFMDLG
Ga0187815_100665563	3300018001	Freshwater Sediment	ELYGQLHQVVAEKPADRDTFFAECIRRWLQFMNLG
Ga0187815_103348892	3300018001	Freshwater Sediment	LVQRGLMAWTGLFGVVSFELYGQLHQVVAEDPAGREAFFAECISRWITFVGLTNGR
Ga0187788_105363451	3300018032	Tropical Peatland	MVWTNLFGVISFELFGQLHNVVGEEPGDRDAFFADCARRWFR
Ga0187769_107434021	3300018086	Tropical Peatland	GLFGVVSFELYGQLHQVVAEDPADRDAFFAECISRWITFVGLT
Ga0210399_106994281	3300020581	Soil	VWTNLFGVISFELFGQLHNVIAEPPAGHDAFFAECIRRWITFTAIT
Ga0210404_105915432	3300021088	Soil	GVISFELFGQLHNVIAEPPAGRDAFFAECIRRWITFTAIT
Ga0210396_107219481	3300021180	Soil	SFELYGQLHEVVGENPGDRDAFFVECVRRWIHLVGIA
Ga0210388_106432511	3300021181	Soil	RVGVISFELYGQLHQVVGEEPGDRDTFFAACIHRWIRFTGIA
Ga0210393_111168241	3300021401	Soil	ISFELYGQLHQVVGEEPGDRDTFFAECIHRWIRFTGIA
Ga0210383_102114194	3300021407	Soil	GVISFELYGQLHQVVGEEPGDRDTFFAECIHRWIRFTGIA
Ga0210384_108812381	3300021432	Soil	FGVISFELFGQLHNVIAEPPAGRDAFFAECIRRWITFTAIT
Ga0210410_113506711	3300021479	Soil	LMVWTNLFGVISFELFGQLHNVIAEPPAGRDAFFAECIRRWITFTAIT
Ga0179589_104452031	3300024288	Vadose Zone Soil	GVVSFELFGQLHNVVAEPPAGRDAFFAECIRRWTTFTAIT
Ga0207693_107395532	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	NLFGVISFELFGQLHNVVAEPPAGRDAFFAASIRHWITFTAIT
Ga0207663_103670451	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RALMVWTNLFGVVSFELFGQLHSVVAEEPGDRAAFFTECIRRWLAFTAVS
Ga0207687_115592742	3300025927	Miscanthus Rhizosphere	ALMVWTNLFGVISFELFGQLHNVVAEPPAGRDAFFAECIRRWITFTAIT
Ga0207690_108485401	3300025932	Corn Rhizosphere	TLMVWTNLFGVISFELFGQLHNVVAEPPAGRDAFFAESIRRWLEFTAIS
Ga0208730_10325851	3300027047	Forest Soil	MASITSLFGTVSFELYGQLHEVVAEAPADREAFFATCIRHWTDFINLRVVP
Ga0208324_11691181	3300027604	Peatlands Soil	MVWTGLFGLISFELNGQRPQVVGRNPGDRDAFFAECVRRWICFIGIG
Ga0209656_100466563	3300027812	Bog Forest Soil	MAWTGLSGVISFELNGQRRQVVGRNPGDRDAFFAECVRHWICFTGLG
Ga0307306_102531351	3300028782	Soil	NLFGVISFELFGQLRNVVAEPPAGRDAFFAESIRRWFAFTAIT
Ga0308309_101582572	3300028906	Soil	MASITSLFGTVSFELYGQLHQVVADPPADREAFFATCIRHWTDFINLRVVP
Ga0308309_102293263	3300028906	Soil	FELYGQLHQVIGEPPADRDAFFAECVHGWLQFMNLG
Ga0318516_106171472	3300031543	Soil	ALMVWTGLFGVISFELYGQLHQVVAEEPADRDTFFAECIRRWLDFMNLG
Ga0318516_107662262	3300031543	Soil	VWTNLFGVVSFEVFGQLHNVVGEDPADRDTFFAECVRRWITFTPIT
Ga0318534_102364562	3300031544	Soil	QRALMVWTGLFGVISFELYGQLHQVVGEEPADRDVFYAECIRRWLQFMDLG
Ga0318555_100102235	3300031640	Soil	FELYGQLHQVVAEEPADRDTFFAECIRRWLDFMNLG
Ga0318542_105718812	3300031668	Soil	TGLFGVISFELYGQLHQVVAEEPADRDTFFAECIRRWLDFMNLG
Ga0318574_100236561	3300031680	Soil	LMVWTGLFGVISFELYGQLHQVVAEEPADRDTFFAECIRRWLDFMNLG
Ga0318574_100733803	3300031680	Soil	VISFELFGQLHNVVEEDPADRDAFFADCIRRWITFTAMT
Ga0318496_105383301	3300031713	Soil	IQRALMVWTGLFGVISFELYGQLHQVVAEEPADRDTFFAECIRRWLDFMNLG
Ga0318493_103289802	3300031723	Soil	NLFGVISFELFGQLHHVVGEEPGDRDAFFAGCVRRWIDLTALT
Ga0307468_1008542001	3300031740	Hardwood Forest Soil	VSFELFGQLHNVVAEPRAGRDAFFAECIRRWTTFITGLTVSS
Ga0318494_100503684	3300031751	Soil	LMVWTNLFGVISFELFGQLHSVVGEDPADRDAFFAECIRRWITFTAIT
Ga0318554_100412571	3300031765	Soil	WTNLFGVISFELFGQLHSVVGEDPADRDAFFAECIRRWITFTAIT
Ga0318526_100772382	3300031769	Soil	TGLFGVISFELYGQLHQVVGEEPADRDVFYAECIRRWLQFMDLG
Ga0318521_102302461	3300031770	Soil	LMVWTNLFGVVSFEVFGQLHNVVGEDPADRDTFFAECVRRWITFTPIT
Ga0318521_106793732	3300031770	Soil	TNLFGVVSFELFGQLHNVVAEDPADRDAFFAACVRHWISFTNLT
Ga0318529_103839791	3300031792	Soil	VWTGLFGVISFELYGQLHQVVGEEPADRDVFYAECIRRWLQFMDLG
Ga0318550_103656212	3300031797	Soil	LVQRALMVWTGLFGVISFELYGQLHQVVGEEPADRDVFYAECIRRWLQFMDLG
Ga0318550_104788661	3300031797	Soil	TGLFGVISFELYGQLHQVVGEEPADRDTFFAECIRRWLDFMNLG
Ga0318517_102118052	3300031835	Soil	TNLFGVVAFEVFGQLHNVVGEDPADRDTFFAECVRRWITFTPIT
Ga0306923_109544231	3300031910	Soil	QRALMVWTGLFGVISFELYGQLHQVVGEKPADRDTFFAECIRRWLDFMNLG
Ga0310910_110464012	3300031946	Soil	TNLFGVVSFELFGQLHNVVEEDPADRDAFFADCIRRWITFTAMT
Ga0310909_109789841	3300031947	Soil	FGVISFELYGQLHQVVGEKPADRDTFFAECIRRWLDFMNLG
Ga0318563_106390402	3300032009	Soil	TWTGLFGVVSFELYGQLHQVVGELPTDRDAFFAECIRRWLAFMDLG
Ga0318559_101049231	3300032039	Soil	MVWTNLFGVISFELFGQLHSVVGEDPADRDAFFAECIRRWITFTAIT
Ga0318549_102759941	3300032041	Soil	TNLFGVISFELFGQLHSVVGEDPADRDAFFAECIRRWITFTAIT
Ga0318545_100577061	3300032042	Soil	GVISFELYGQLHQVVAEEPADRDTFFAECIRRWLDFMNLG
Ga0318575_101679492	3300032055	Soil	IQRALMVWTGLFGVISFELYGQLHQVVGEEPADRDVFYAECIRRWLQFMDLG
Ga0318575_103781601	3300032055	Soil	FGVISFELYGQLHQVVAEEPADRDTFFAECIRRWLDFMNLG
Ga0318514_100372274	3300032066	Soil	RALMVWTGLFGVISFELYGQLHQVVAEEPADRDTFFAECIRRWLDFMNLG
Ga0307472_1007714581	3300032205	Hardwood Forest Soil	LFGVISFELFGQLHNVVAEPPAGRDAFFAESIRRWLEFTAIS
Ga0335085_102287294	3300032770	Soil	QRALMVWTNLFGVISFELFGQLHSVVGEDPADRDVFFAECIRYWITFTAIGRSPSSV
Ga0335085_112354721	3300032770	Soil	ELYGQLHNVVGEPSRDRGTFFAECIRHWIRFTGII
Ga0335077_108418651	3300033158	Soil	PAVPAPLVQRALMVWTNLFGVISFELYGQLHNVVGEPSRDRGTFFAECIRHWIHLTGII

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101609

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences