NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F101610

Metagenome Family F101610

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101610
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 43 residues
Representative Sequence MSSDRIIVDAIKVAQDLLRQNLPPTHNLTDAATVMRFRELVRSQ
Number of Associated Samples 76
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 40.00 %
% of genes near scaffold ends (potentially truncated) 24.51 %
% of genes from short scaffolds (< 2000 bps) 19.61 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (77.451 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(22.549 % of family members)
Environment Ontology (ENVO) Unclassified
(38.235 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(63.725 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72
1AP72_2010_repI_A001DRAFT_10832661
2Ga0062595_1023147121
3Ga0066395_103787172
4Ga0066680_107139791
5Ga0066684_109485282
6Ga0066388_1036329922
7Ga0066388_1085374721
8Ga0066388_1086331361
9Ga0070713_1014311191
10Ga0070710_106136402
11Ga0066697_101776793
12Ga0066701_106131111
13Ga0066695_100311556
14Ga0066695_101232141
15Ga0066698_107560022
16Ga0066654_101059182
17Ga0066905_1000724521
18Ga0066905_1003504181
19Ga0066905_1006575101
20Ga0066903_1003053386
21Ga0066903_1008579461
22Ga0066903_1029741203
23Ga0066903_1045256301
24Ga0070717_119571651
25Ga0066652_1019692831
26Ga0070712_1013940451
27Ga0075428_1008977201
28Ga0075426_109945422
29Ga0099795_103679882
30Ga0066709_1024029861
31Ga0066709_1037701711
32Ga0111538_115625202
33Ga0075423_127004862
34Ga0126380_111150391
35Ga0126384_108867682
36Ga0126384_111256871
37Ga0126384_122575201
38Ga0134070_104297451
39Ga0126372_100278406
40Ga0126372_116251241
41Ga0126379_113390343
42Ga0126381_1021711211
43Ga0126383_108582243
44Ga0126383_116460271
45Ga0126383_123739291
46Ga0126383_127644631
47Ga0134123_124272332
48Ga0137390_118824561
49Ga0137359_103440094
50Ga0164305_101587981
51Ga0182036_108292861
52Ga0182034_104130331
53Ga0182034_112766361
54Ga0182039_108844103
55Ga0182038_106746511
56Ga0182038_114020661
57Ga0066655_105125461
58Ga0066655_110954462
59Ga0210400_110286691
60Ga0210400_114094682
61Ga0126371_134549732
62Ga0179589_105495541
63Ga0207684_110926092
64Ga0207693_109755491
65Ga0207665_104493704
66Ga0209055_10889631
67Ga0209058_11569731
68Ga0209325_10021711
69Ga0318534_105233481
70Ga0318573_104102821
71Ga0310915_100959371
72Ga0318572_100363781
73Ga0306917_102124652
74Ga0306917_109285891
75Ga0306918_110293401
76Ga0318554_107419332
77Ga0318509_107713621
78Ga0318508_10755451
79Ga0318547_110756732
80Ga0318512_101602731
81Ga0306923_114217202
82Ga0310910_110561411
83Ga0310909_101233774
84Ga0310909_108113451
85Ga0306926_114389171
86Ga0306926_115338501
87Ga0306926_117102301
88Ga0306926_128531901
89Ga0306922_108330161
90Ga0318545_101116841
91Ga0318558_101255311
92Ga0318533_104072921
93Ga0318533_105464662
94Ga0318505_102854312
95Ga0318514_107090072
96Ga0306924_121625502
97Ga0318577_100175277
98Ga0318540_105559771
99Ga0307472_1012982203
100Ga0306920_1008700581
101Ga0306920_1032924801
102Ga0310914_113431581
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 48.61%    β-sheet: 0.00%    Coil/Unstructured: 51.39%
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Variant

510152025303540MSSDRIIVDAIKVAQDLLRQNLPPTHNLTDAATVMRFRELVRSQSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
22.5%77.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Soil
Soil
Grasslands Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Tropical Forest Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Populus Rhizosphere
3.9%12.7%10.8%3.9%22.5%17.6%10.8%6.9%3.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AP72_2010_repI_A001DRAFT_108326613300000893Forest SoilMSSDRVIIDAIKVAQDLLRQNLPPTHNLTDAAAVLRF
Ga0062595_10231471213300004479SoilMSSDRIIVEAIKAAQDLLSQNLPPAHNLTDAATVMRFRELIRSQA
Ga0066395_1037871723300004633Tropical Forest SoilMSSDRIIVDAIKVAQDLLLQNLPPAHNFTDAATVMRFRELVRSQAIRSA
Ga0066680_1071397913300005174SoilMLRLRFFHMSSDRVIVDAIKVAQDLLRQNLPPARNLTDAAVVLRFRE
Ga0066684_1094852823300005179SoilLKPNALGSTVALIFLPMSSDRIIVEAIKAGQNLLSQNLPPAHSLTDAATVMRFRELVRSQ
Ga0066388_10363299223300005332Tropical Forest SoilMSSERVIVEAIKMAQDFLCQNLPAVQNLSDAAAVMRFREIVR
Ga0066388_10853747213300005332Tropical Forest SoilMSDDRIIVDAIKVAQNLLCQNLQAAQNLSDAAAVMRFRELVRS
Ga0066388_10863313613300005332Tropical Forest SoilMSSDRIIVEAIKVAQDLLSQNLPPAHNLTDAATVLRFRELVRSQ
Ga0070713_10143111913300005436Corn, Switchgrass And Miscanthus RhizosphereMSFLPMSSDRIIVEAIKVGQNLLSQNLPPAHSLTDAATVMRFRELVRSQ
Ga0070710_1061364023300005437Corn, Switchgrass And Miscanthus RhizosphereMSSDRIIADGIKVAQDLLRQNLPPTHNLTDAAVVLRFRELVRSQAIRS
Ga0066697_1017767933300005540SoilMSSDRVIVEAIKVGQNLLSQNLPPAHSLTDAATVMRFRELV
Ga0066701_1061311113300005552SoilMLRLRFFHMSSDRVIVDAIKVAQDLLRQNLPPARNLTDAAVVLRF
Ga0066695_1003115563300005553SoilMSSDRTIVDAIKVAQDLLRQNLPPTHNLTDAATVMRFRELVRSQAIRSA
Ga0066695_1012321413300005553SoilMSSDRIIVDVIKVAQDLLAQNLSAAQTLTDAAAVMRFRELVR
Ga0066698_1075600223300005558SoilFHMSSDRVIVDAIKVAQDLLRQNLPPARNLTDAAVV*
Ga0066654_1010591823300005587SoilMTYERVIVEASKVAQELLRQNLPPTHNLTDAATVLRL
Ga0066905_10007245213300005713Tropical Forest SoilMSSERIIVDAIKVAQNLLNQNLPPAHKLTDAATVLRFRELVRSQAIRSALER
Ga0066905_10035041813300005713Tropical Forest SoilMSSDRIIVDAIKVAQDLLCQNLPAAQKLSDAAAVLRFRELVHSQAVRSAL
Ga0066905_10065751013300005713Tropical Forest SoilMSSDRTIVDAIKVAQDLLRQNLPSTHNLTDAAAVMRFR
Ga0066903_10030533863300005764Tropical Forest SoilMSSDRAIVDAIKVAQDLLRQNLPPTHNLTDAATVMRFRELVRSQA
Ga0066903_10085794613300005764Tropical Forest SoilMSSDRIIVDAIKVAQNLLNQNLPPAHNLTDAATVLRF
Ga0066903_10297412033300005764Tropical Forest SoilMILTVTIVDAIKVAQGLLQQNLPPAHNLTDAATVMRFRELVRSP
Ga0066903_10452563013300005764Tropical Forest SoilMSSDRPIADGIKVAQDLLRQNLPPAHNLTDAAVVLRFRELVRSQA
Ga0070717_1195716513300006028Corn, Switchgrass And Miscanthus RhizosphereMSSDRIIADGIKVAQDLLRQNLPPTHNLTDAAVVLRFRELV
Ga0066652_10196928313300006046SoilMTYERIIVEAIKVAQELLRQNLPPTHNLTDAATVLRL
Ga0070712_10139404513300006175Corn, Switchgrass And Miscanthus RhizosphereMSSDRIIVEAIKVGQNLLSQNLPPAHSLTDAATVMRFRELVRSQAIRSAL
Ga0075428_10089772013300006844Populus RhizosphereMSSDRIIVEAIKVGQNLLSQNLPPAHSLTDAATVMRF
Ga0075426_1099454223300006903Populus RhizosphereMSSDRIIVEAIKMGQSLLSQNLPPAHSLTDAATVTRFRELVRSQALR
Ga0099795_1036798823300007788Vadose Zone SoilMSFLPMSSDRIIVEAIKVGQNLLSQNLPPAHSLTDAA
Ga0066709_10240298613300009137Grasslands SoilMLRLRFFHMSSDRVIVDAIKVAQDLLRQNLPPARNLTDA
Ga0066709_10377017113300009137Grasslands SoilMSSDRVIVDTIKVAQDLLRQNLPPTHNLTDATTVMRFRELVRSQATSTIRSFRSRC
Ga0111538_1156252023300009156Populus RhizosphereVSSDRIIVETIKVAQGLLCQNLPAVHTLSDAALVMRFRELVRSQTVRAALERS
Ga0075423_1270048623300009162Populus RhizosphereMSSDRIIVDAIKVAQDLLLQNLPPAHNFTDAATVMR
Ga0126380_1111503913300010043Tropical Forest SoilMSSDRVIVEALKVAQELLRQNLPPTHNLTDAATVLRLRERPSGCLG
Ga0126384_1088676823300010046Tropical Forest SoilMSSDRIIVDAIKVAQDLLWQNLPPTHNLTDAATVMRFRELVRSQA
Ga0126384_1112568713300010046Tropical Forest SoilMSPDRLIVEAIKSAQDLLRQNLPPGHNLTDAATVLRLRELVHSP
Ga0126384_1225752013300010046Tropical Forest SoilMSSERIIVDAIKVAQNLLNQNLPPAHKLTDAATVLRFRELVRSQAIRS
Ga0134070_1042974513300010301Grasslands SoilMLRLRFFHMSSDRVIVDAIKVAQDLLRQNLPPARNLTDAAVVLRFREFVRS
Ga0126372_1002784063300010360Tropical Forest SoilMSSDRVIIDAIKVAQDLLRQNLPPTHNLTDAAAVLRFRELVRSQAIRSALE
Ga0126372_1162512413300010360Tropical Forest SoilVSSDRIIVEAIKVAQDLLSQNLPPAHNLTDAATVLRFRELVRSQAI
Ga0126379_1133903433300010366Tropical Forest SoilMSSDRTIVDAIKVAQDLLRQNLPPAHNLTDAATVMRFRELVRSQAIR
Ga0126381_10217112113300010376Tropical Forest SoilMSSDRIIIDAIKVAKDLLWQNLPPTHNLTDAATVMRFRELVRSQAIRSTLER
Ga0126383_1085822433300010398Tropical Forest SoilMSSDRTIVDAIKVAQDLLRQNLPPAHNLTDAATVMRFRELVRSQ
Ga0126383_1164602713300010398Tropical Forest SoilVNSDRIIVDAIKVAQNLLSQNLTPAHNLTDAATVLRFRE
Ga0126383_1237392913300010398Tropical Forest SoilMSSDRTIVDAIKVAQDLLRQNLPPTHNLTDAATVMRFRELVRSQAIRS
Ga0126383_1276446313300010398Tropical Forest SoilMSSERIIVDAIKVAQNLLNQNLPPAHKLTDAATVL
Ga0134123_1242723323300010403Terrestrial SoilMIPDRLIVEAIKVAQDLLRQNLPPMHNLTDAATVLRLREVHR
Ga0137390_1188245613300012363Vadose Zone SoilMSSDRIIVDAFKVAQNLLSQNLPPAHNLTDAATVLRFRELVRSQAI
Ga0137359_1034400943300012923Vadose Zone SoilMSSDRIIVDAIKVAQDLLRQNLPPTHNLTDAATVMRFRELVRSQ
Ga0164305_1015879813300012989SoilVAYEFLPMSSDRIIVEAIKVGQNLLSQNLPPAHSLTDAATVMRFRELVRSQ
Ga0182036_1082928613300016270SoilMSSDRVIIDAIKVAKDLLWQNLPPTHNLTDAATVMRFRELVRSQAIRSALE
Ga0182034_1041303313300016371SoilMSSDRVIVDAIKVAQDLLRQNLPTAHHLTDAAAVLRF
Ga0182034_1127663613300016371SoilVPMSSDRTIVDAIKVAQDLLRQNLPPAHNLTDAATVM
Ga0182039_1088441033300016422SoilMSSDRTIVDAIKVAQDLLRQNLPSTHNLTDAAAVMRFRELVRSQ
Ga0182038_1067465113300016445SoilMSSDRVIVDAIKVAQDLLCQNLPPAHNLTDAATVM
Ga0182038_1140206613300016445SoilMSSDRAIIDAIKVAKDLLWQNLPPTHNLTDAATVMRFR
Ga0066655_1051254613300018431Grasslands SoilAFFHMSSDRVIVDAIKVAQDLLRQNLPPARNLTDAAVV
Ga0066655_1109544623300018431Grasslands SoilMSSDRIIVDAIKVAQDLLLQNLPPAHNFTDAATVMRFRE
Ga0210400_1102866913300021170SoilMSSDRIIVDAIKVAQDLLLQNLPPAHNFTDAATVMRFRELVRSQAIRSAL
Ga0210400_1140946823300021170SoilMSSDRTIVDAIKVAQDLLRQNLPPTHNLTDAATVMR
Ga0126371_1345497323300021560Tropical Forest SoilMSSDHVIAEGIKVAQNFLRQNLPSTRNLTDAAVVLRFRELVRSQAIRS
Ga0179589_1054955413300024288Vadose Zone SoilMSSDRIIVDAFKVAQNLLSQNLPPAHNLTDAATVLRFRELV
Ga0207684_1109260923300025910Corn, Switchgrass And Miscanthus RhizosphereMSSDRIIADGIKVAQDLLRQNLPPTHNLTDAAVVLR
Ga0207693_1097554913300025915Corn, Switchgrass And Miscanthus RhizosphereMSFLPMSSDRIIVEAIKVGQNLLSQNLPPAHSLTDAATVMRFRELVRS
Ga0207665_1044937043300025939Corn, Switchgrass And Miscanthus RhizosphereMSSDRVIADGIKVAQDLLRQNLPPTHNLTDAAVVLRFREL
Ga0209055_108896313300026309SoilMSSDRTIVDAIKVAQDLLRQNLPPTHNLTDAATVMRFRELVRSQ
Ga0209058_115697313300026536SoilSAVFHMSSDRVIVDAIKVAQDLLRQNLPPARNLTDAAVV
Ga0209325_100217113300027050Forest SoilMSSDRTIVDAIKVAQDLLRQNLPPTHNLTDAATVMRFR
Ga0318534_1052334813300031544SoilMSSERIIVDGIKVAQNLLNQNLPPAHNLTDAATVLRFRELVRSQAIRSALE
Ga0318573_1041028213300031564SoilMSSDRIIVDAIKVAQDLLLQNLPPAHSFTDAATVMRFRELVRSQPIRSALE
Ga0310915_1009593713300031573SoilMSSDRVIVDAIKVAQDLLRQNLPPAHHLTDAAAVLRFRELVRSQA
Ga0318572_1003637813300031681SoilMSSDRVIIDAIKVAKDLLWQNLPPTHNLTDAATVMRFRELVR
Ga0306917_1021246523300031719SoilMSSDRIIVDTIKVAQDLLLQNLPPAHNLTDAATVMRFRELFRSQAIRSALD
Ga0306917_1092858913300031719SoilMSSDRIIVDAIKVAQDLLLQNLPPAHNFTDAATVMRFR
Ga0306918_1102934013300031744SoilMSSDRIIVDAIKVAQDLLLQNLPPAHNFTDAATVMRFRELVRSQ
Ga0318554_1074193323300031765SoilMSSDRTIVDAIKVAQDLLRQNLPPTHNLTDAATVMRFRELVRSQAIRSALE
Ga0318509_1077136213300031768SoilMSSDRIIVDAIKVAQDLLRQNLPPMHNLTDAATVMRFRELVRSQ
Ga0318508_107554513300031780SoilMSSERIIVDAIKVAQNLLNQNLPPAHNLTDAATVLRFRELVRSQAIRSA
Ga0318547_1107567323300031781SoilMSSDRTIFDAIKVAQDLLRQNLPSTHNLTDAAAVMRFRELVRSQAIRS
Ga0318512_1016027313300031846SoilMSSDRIIVDAIKVAQDLLLQNLPPAHNFTDAATVMRFRELV
Ga0306923_1142172023300031910SoilMSSDRIIVDAIKVAQDLLRQNLPPMHNLTDAATVMRFRELVRSQAIRSALVR
Ga0310910_1105614113300031946SoilMSSDRTIVEAIKVAQDWLRQNLPPTHNLTDAATVMRFRELVRSQ
Ga0310909_1012337743300031947SoilMSSDRVIVDAIKVAQDLLRQNLPTAHHLTDAAAVLRFRELV
Ga0310909_1081134513300031947SoilMSSDRTIFDAIKVAQDLLRQNLPSTHNLTDAAAVMRFRELV
Ga0306926_1143891713300031954SoilMSSDRVIVDAIKVAQDLLCQNLPPAHNLTDAATVMRFRELV
Ga0306926_1153385013300031954SoilMSSDRIIVDAIKVAQDLLLQNLPPAHNFTDAATVMRF
Ga0306926_1171023013300031954SoilMSSERIIVDAIKVAQNLLNQNLPPAHNLTDAATVLRFRELVR
Ga0306926_1285319013300031954SoilMSSDRVIVDAIKVAQDLLRQNLPPAHHLTDAAAVLRFRELVRSQAVRSALD
Ga0306922_1083301613300032001SoilMSSDRIIVDTIKVAQDLLLQNLPPAHNLTDAATVMRFRDILARES
Ga0318545_1011168413300032042SoilMSSDRTIVDAIKVAQDLLRQNLTPTHNLTDAATVM
Ga0318558_1012553113300032044SoilMSSDRTIVDAIKVAQDLLRQNLPPAHNLTDAATVM
Ga0318533_1040729213300032059SoilMSSDRVIVDAIKVAQDLLRQNLPPAHHLTDAAAVLRFRELVRSQAVRSA
Ga0318533_1054646623300032059SoilMSSDRIIVDAIKVAQDLLLQNLPPAHNFTDAATVMRFRELVRSQAIRSALE
Ga0318505_1028543123300032060SoilMSSDRTIVDAIKVAQDLLRQNLPSTHNLTDAAAVM
Ga0318514_1070900723300032066SoilMHSDRTIVDAIKVAQDLLRQNLASTHNLTDAAAVMRFRELVRSQVIR
Ga0306924_1216255023300032076SoilMSSDRTIFDAIKVAQDLLRQNLPSTHNLTDAAAVMRFRELVRSQAIR
Ga0318577_1001752773300032091SoilMSSDRIIVDTIKVAQDLLLQNLPPAHNLTDAATVMRF
Ga0318540_1055597713300032094SoilVPMSSDRTIVDAIKVAQDLLRQNLPPAHNLTDAATV
Ga0307472_10129822033300032205Hardwood Forest SoilMSSDRLIVEAIKVAQELLRQNLPPTHNLTDAATVLRLRELMRSPSIQ
Ga0306920_10087005813300032261SoilMSSDRTIVDAIKVAQDLLRQNLLSTHNLTDAATVMRFRELVRSQA
Ga0306920_10329248013300032261SoilMSSDRTIVEAIKVAQDWLRQNLPPTHNLTDAATVMRFRELVRSQAI
Ga0310914_1134315813300033289SoilMSSDRIIIDAIKVAKDLLWQNLPPTHNLTDAATVMRFR


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