Metagenome / Metatranscriptome Family F101616

Basic Information
Family ID	F101616
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	47 residues
Representative Sequence	MWIKTSLIALGTASALAAATPAPTLAQGVYIGPGGVGVDVGRPGWRE
Number of Associated Samples	87
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	98.04 %
% of genes near scaffold ends (potentially truncated)	94.12 %
% of genes from short scaffolds (< 2000 bps)	94.12 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Most Common Taxonomy
Group	Unclassified (70.588 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (39.216 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.039 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 24.00% β-sheet: 10.67% Coil/Unstructured: 65.33%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF03401	TctC	4.90
PF13545	HTH_Crp_2	0.98
PF00912	Transgly	0.98
PF13442	Cytochrome_CBB3	0.98
PF01527	HTH_Tnp_1	0.98
PF02735	Ku	0.98
PF00816	Histone_HNS	0.98
PF03466	LysR_substrate	0.98
PF13581	HATPase_c_2	0.98
PF11535	Calci_bind_CcbP	0.98
PF11306	DUF3108	0.98
PF05433	Rick_17kDa_Anti	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	4.90
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.98
COG2916	DNA-binding protein H-NS	Transcription [K]	0.98
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.98
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.59 %
All Organisms	root	All Organisms	29.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.59 %
cellular organisms	root	All Organisms → cellular organisms	29.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.59 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.59 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.59 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.53 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.59 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.73 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.96 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.59 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	3.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.98 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.98 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.98 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	0.98 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.59 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	3.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	0.98 %
Rhodoblastus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.98 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.59 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	2.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	0.98 %
unclassified Rhodoblastus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → unclassified Rhodoblastus	0.98 %
Mesorhizobium amorphae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.59 %
Methylobacterium sp. MB200	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. MB200	1.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %
Mesorhizobium amorphae CCBAU 01583	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	0.98 %
Rhodoblastus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → unclassified Rhodoblastus → Rhodoblastus sp.	0.98 %
Methylobacterium sp. WSM2598	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. WSM2598	0.98 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2001200001\|2001331835	Not Available	1096	Open in IMG/M
2088090014\|GPIPI_16647150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2070	Open in IMG/M
2228664021\|ICCgaii200_c0451103	Not Available	590	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100432344	Not Available	769	Open in IMG/M
3300000789\|JGI1027J11758_12301198	Not Available	515	Open in IMG/M
3300000955\|JGI1027J12803_100047585	Not Available	1135	Open in IMG/M
3300000955\|JGI1027J12803_100259307	Not Available	644	Open in IMG/M
3300000955\|JGI1027J12803_100584425	Not Available	970	Open in IMG/M
3300000955\|JGI1027J12803_101592141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	622	Open in IMG/M
3300000955\|JGI1027J12803_102048070	Not Available	581	Open in IMG/M
3300000956\|JGI10216J12902_126982814	Not Available	704	Open in IMG/M
3300003267\|soilL1_10073510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1340	Open in IMG/M
3300004463\|Ga0063356_103091603	Not Available	717	Open in IMG/M
3300004479\|Ga0062595_102503947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. MB200	515	Open in IMG/M
3300005093\|Ga0062594_100651774	Not Available	937	Open in IMG/M
3300005171\|Ga0066677_10473621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	718	Open in IMG/M
3300005332\|Ga0066388_100414929	All Organisms → cellular organisms → Bacteria → Proteobacteria	1990	Open in IMG/M
3300005340\|Ga0070689_100798675	All Organisms → cellular organisms → Bacteria → Proteobacteria	830	Open in IMG/M
3300005347\|Ga0070668_100617908	Not Available	949	Open in IMG/M
3300005354\|Ga0070675_100470004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1130	Open in IMG/M
3300005438\|Ga0070701_10170956	Not Available	1265	Open in IMG/M
3300005543\|Ga0070672_100721635	Not Available	873	Open in IMG/M
3300005547\|Ga0070693_100185905	Not Available	1341	Open in IMG/M
3300005547\|Ga0070693_101296490	Not Available	563	Open in IMG/M
3300005561\|Ga0066699_11242993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. MB200	511	Open in IMG/M
3300005616\|Ga0068852_100216296	Not Available	1820	Open in IMG/M
3300005617\|Ga0068859_102619085	Not Available	555	Open in IMG/M
3300005840\|Ga0068870_10589112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	754	Open in IMG/M
3300005937\|Ga0081455_10025538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5450	Open in IMG/M
3300005937\|Ga0081455_10683973	Not Available	656	Open in IMG/M
3300006175\|Ga0070712_101260299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. WSM2598	644	Open in IMG/M
3300006755\|Ga0079222_11513458	Not Available	630	Open in IMG/M
3300006791\|Ga0066653_10145407	Not Available	1146	Open in IMG/M
3300006854\|Ga0075425_103076395	Not Available	509	Open in IMG/M
3300006903\|Ga0075426_10736847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	740	Open in IMG/M
3300009093\|Ga0105240_12649217	Not Available	518	Open in IMG/M
3300009553\|Ga0105249_11298457	Not Available	799	Open in IMG/M
3300009553\|Ga0105249_13402344	Not Available	512	Open in IMG/M
3300010047\|Ga0126382_10600065	Not Available	906	Open in IMG/M
3300010047\|Ga0126382_11571297	Not Available	608	Open in IMG/M
3300010159\|Ga0099796_10208792	Not Available	795	Open in IMG/M
3300010360\|Ga0126372_12736258	Not Available	545	Open in IMG/M
3300010399\|Ga0134127_11078467	Not Available	866	Open in IMG/M
3300010403\|Ga0134123_12299132	Not Available	603	Open in IMG/M
3300012200\|Ga0137382_11198628	Not Available	539	Open in IMG/M
3300012211\|Ga0137377_11914960	Not Available	510	Open in IMG/M
3300012212\|Ga0150985_107761569	Not Available	508	Open in IMG/M
3300012212\|Ga0150985_119867733	Not Available	740	Open in IMG/M
3300012212\|Ga0150985_120497909	Not Available	694	Open in IMG/M
3300012582\|Ga0137358_10265749	Not Available	1166	Open in IMG/M
3300012929\|Ga0137404_11203774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	697	Open in IMG/M
3300012960\|Ga0164301_10720171	Not Available	753	Open in IMG/M
3300012961\|Ga0164302_10906887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	677	Open in IMG/M
3300012961\|Ga0164302_11470512	Not Available	560	Open in IMG/M
3300012985\|Ga0164308_10203754	Not Available	1510	Open in IMG/M
3300012985\|Ga0164308_10316315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1246	Open in IMG/M
3300012989\|Ga0164305_11215775	Not Available	654	Open in IMG/M
3300014325\|Ga0163163_10011484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8037	Open in IMG/M
3300014326\|Ga0157380_10139399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2081	Open in IMG/M
3300014969\|Ga0157376_10435822	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
3300015242\|Ga0137412_11302389	Not Available	507	Open in IMG/M
3300015372\|Ga0132256_102774810	Not Available	588	Open in IMG/M
3300015372\|Ga0132256_103923310	Not Available	500	Open in IMG/M
3300015373\|Ga0132257_100301292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	1926	Open in IMG/M
3300015373\|Ga0132257_103098390	Not Available	605	Open in IMG/M
3300018028\|Ga0184608_10149086	Not Available	1007	Open in IMG/M
3300018469\|Ga0190270_11560727	Not Available	711	Open in IMG/M
3300020005\|Ga0193697_1137503	Not Available	553	Open in IMG/M
3300021475\|Ga0210392_10706393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → unclassified Rhodoblastus → Rhodoblastus sp.	751	Open in IMG/M
3300021478\|Ga0210402_11520248	Not Available	597	Open in IMG/M
3300021560\|Ga0126371_10501042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1362	Open in IMG/M
3300022756\|Ga0222622_10360481	Not Available	1015	Open in IMG/M
3300024055\|Ga0247794_10260701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	575	Open in IMG/M
3300025900\|Ga0207710_10148788	Not Available	1135	Open in IMG/M
3300025908\|Ga0207643_10594188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	712	Open in IMG/M
3300025918\|Ga0207662_10009260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5412	Open in IMG/M
3300025931\|Ga0207644_11131951	Not Available	658	Open in IMG/M
3300025935\|Ga0207709_11225797	Not Available	619	Open in IMG/M
3300025942\|Ga0207689_10675370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	871	Open in IMG/M
3300025945\|Ga0207679_10229444	Not Available	1566	Open in IMG/M
3300026067\|Ga0207678_10243318	Not Available	1541	Open in IMG/M
3300026118\|Ga0207675_101535431	Not Available	686	Open in IMG/M
3300027669\|Ga0208981_1168298	Not Available	554	Open in IMG/M
3300027903\|Ga0209488_11163255	Not Available	522	Open in IMG/M
3300027909\|Ga0209382_10723103	Not Available	1069	Open in IMG/M
3300028380\|Ga0268265_10123592	Not Available	2137	Open in IMG/M
3300028380\|Ga0268265_10534985	Not Available	1110	Open in IMG/M
3300028710\|Ga0307322_10019309	All Organisms → cellular organisms → Bacteria → Proteobacteria	1562	Open in IMG/M
3300028711\|Ga0307293_10174985	Not Available	683	Open in IMG/M
3300028716\|Ga0307311_10083908	Not Available	878	Open in IMG/M
3300028876\|Ga0307286_10094873	Not Available	1043	Open in IMG/M
3300028884\|Ga0307308_10482023	Not Available	595	Open in IMG/M
3300030902\|Ga0308202_1072945	Not Available	669	Open in IMG/M
3300030903\|Ga0308206_1066599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	749	Open in IMG/M
3300031092\|Ga0308204_10302176	Not Available	536	Open in IMG/M
3300031198\|Ga0307500_10227175	Not Available	568	Open in IMG/M
3300031547\|Ga0310887_10509702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	726	Open in IMG/M
3300031720\|Ga0307469_11904914	Not Available	576	Open in IMG/M
3300031908\|Ga0310900_11574202	Not Available	556	Open in IMG/M
3300031954\|Ga0306926_11874621	Not Available	678	Open in IMG/M
3300032180\|Ga0307471_104300555	Not Available	503	Open in IMG/M
3300032205\|Ga0307472_100606402	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.69%
Host-Associated	Host-Associated	34.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.73%
Plants	Host-Associated → Plants	34.31%
Aquatic	Environmental → Aquatic	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.69%
Sediment	Environmental → Aquatic → Sediment	1.96%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.80%
Loam	Environmental → Terrestrial → Soil → Loam	8.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.84%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2001200001	Soil microbial communities from Waseca County, Minnesota, USA - Sample 10150	Environmental	Open in IMG/M
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2001391693	2001200001	Soil	MGIKTSLIALGVAAATVAATPAPTLAQGVHIGPNAP
GPIPI_03105080	2088090014	Soil	MWNKTSVAALGIIGALTCASPAPTLAQGVYVGPGGVGVDVGRPGWRERDYRDRG
ICCgaii200_04511031	2228664021	Soil	MWIKTSLIALGFAAATLAATPAPTLAQGVHIGPNGVGIDIGRPGYRER
INPhiseqgaiiFebDRAFT_1004323441	3300000364	Soil	MWIKTYLVTLGLVSALAAATPASTLAQGVYIGPGGVGVDVGR
JGI1027J11758_123011981	3300000789	Soil	MWIKTYLVTLGLVSALAAATPASTLAQGVYIGPGG
JGI1027J12803_1000475854	3300000955	Soil	MWIKTSVAALGIVGALAAATPAPTLAQGVYVGPGGVGVDVGRPGWRERDYRD
JGI1027J12803_1002593071	3300000955	Soil	MWIKTYLVTLGLVSALAAATPASTLAQGVYIGPGGVGVDVGRPGW
JGI1027J12803_1005844251	3300000955	Soil	MWIKMSLIALGTASALVAATPAPTLAQGVYIGPGGVGVDVGRPGWRERDYYRDDYT
JGI1027J12803_1015921411	3300000955	Soil	MWMKTSLIALGIASALAAATPTPTLALDVHVGPGGVGVDT
JGI1027J12803_1020480701	3300000955	Soil	MWINTSVAALGIVGALAAATPAPTLAQGVYVGPGGVGVDVGRPGWRERDY
JGI10216J12902_1269828141	3300000956	Soil	MWIKTSVAALGIVGALAAATPAPTLAQGVYVGPGGVGV
soilL1_100735102	3300003267	Sugarcane Root And Bulk Soil	MWIKTSLIALATVGILATGTPAPTLAQGVHIGPGGVGIDIGRPGWRERHDR
Ga0063356_1030916031	3300004463	Arabidopsis Thaliana Rhizosphere	MWIKTSVIALGFAAATLAATPAPTLAQGVHIGPNGVGIDIGRPGYRERHY
Ga0062595_1025039471	3300004479	Soil	MWIKTSVAALGIVGALAAATPAPTLAQGVYVGPGGVGVDVGRPGWRERDYRDRGYG
Ga0062594_1006517741	3300005093	Soil	MWNKTSVAALGIIGALTCASPAPTLAQGVYVGPGGVGVDVGRPGWRERDYRDRG*
Ga0066677_104736212	3300005171	Soil	MWIKTSLAALGMMGALAAATPAPSLAQGVYVGPGGVGVDTGRPGWRH
Ga0066388_1004149292	3300005332	Tropical Forest Soil	MWIKTSLAALGLIGALTVASPAPTLAQGVHVGPGGVGVDTGRPGWRHDRAYRGYA*
Ga0070689_1007986751	3300005340	Switchgrass Rhizosphere	MWIKTSLIALGLAGAMAAGTPAPTLAQGVHIGPGGVGIDIGRPGYRERHYRGGVYDDYAYDR
Ga0070668_1006179081	3300005347	Switchgrass Rhizosphere	MWIKASLIAVGFVAATAAATPAPTLAQGVYVGPGGVSVDVGQ
Ga0070675_1004700041	3300005354	Miscanthus Rhizosphere	MWIRTSLIALGLAGAMAAGTPVPTLAQGVHIGPGGVGIDIGR
Ga0070701_101709563	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MWIKASLIAVGFVAATAAATPAPTLAQGVYVGPGGVSVDVG
Ga0070672_1007216352	3300005543	Miscanthus Rhizosphere	MWIKSSLIALGFAGAMVASTPAPAPAQGVHVGPGGVSVDVGR
Ga0070693_1001859051	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MWIKASLIAVGFVAATAAATPAPTLAQGVYVGPGGVSVDVGQPRYRE
Ga0070693_1012964901	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MWIKTSLIALGLAAAMAAATPAPTLAQGVHIGPGGVGIDIGR
Ga0066699_112429931	3300005561	Soil	MWIKTSLIALGTASALAAATPAPTLAQGVYIGPGGVGVDVGRPGWRERDYY*
Ga0068852_1002162961	3300005616	Corn Rhizosphere	MWIKASLIAVGFVAATAAATPAPTLAQGVYVGPGG
Ga0068859_1026190851	3300005617	Switchgrass Rhizosphere	MWIKTSLIALGLAGAMATATPAPTLAQGVHIGPGGVGI
Ga0068870_105891122	3300005840	Miscanthus Rhizosphere	MWIKTSLIALGFVGAMAAATPSPTLAQGVYVGPGGVGV
Ga0081455_100255381	3300005937	Tabebuia Heterophylla Rhizosphere	MWIKTSLAVLGMMGALAAATPTSAVAQGVHIGPGGVGIDVGRPGWRERHYRDRDAYAYER
Ga0081455_106839731	3300005937	Tabebuia Heterophylla Rhizosphere	MWIKTSLIAFGIAGAVAATTPAPTLAQGVYVGPGGVGVDL
Ga0070712_1012602991	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MWNKTSVAALGIIGALTCASPAPTLAQGVYVGPGGVGVDVGRPGWRERDY
Ga0079222_115134582	3300006755	Agricultural Soil	MWIKTSVAALGIVGALAAASPAPTLAQGVYVGPGGVGVDIGRP
Ga0066653_101454072	3300006791	Soil	MWLKTSLIALGMAGALAAATPAPTLAQGAYVRPGGVG
Ga0075425_1030763952	3300006854	Populus Rhizosphere	MWMKMSLIALGMASALATATPAPTLAQGVYVGPGGVGV
Ga0075426_107368473	3300006903	Populus Rhizosphere	MWLKTSLIALGMASALAAATSEPTLAQGVYVGPGGVGVDLGRPGWRERHYRDD
Ga0105240_126492171	3300009093	Corn Rhizosphere	MWIRTSLIALGLAGAMAAGTPAPTLAQGVHRPGGVGIDIGRPGYRERHYRGGVYDDYA
Ga0105249_112984572	3300009553	Switchgrass Rhizosphere	MWIKTSLIALGLAGAMAASTPAPTLAQGVHIGPGGVGIDIGRPGY
Ga0105249_134023441	3300009553	Switchgrass Rhizosphere	MWIKTYLVTLGLVSALAAATPASTLAQGVYIGPGGVGVDVGRPGWRERDYYRD
Ga0126382_106000653	3300010047	Tropical Forest Soil	MWLKTSLAALGMMGALAAASPTPAVAQGVYIGPDGGGIDTGRPGWRERHYRGHDDYA
Ga0126382_115712972	3300010047	Tropical Forest Soil	MWIKTSIAAFGIVGALAAATPAPTLAQGVHIGPGGVGIDVGRPGWRERHYRD
Ga0099796_102087921	3300010159	Vadose Zone Soil	MWIKASLIAVGFVAATAAATPAPTLAQGAYVGPGGV
Ga0126372_127362581	3300010360	Tropical Forest Soil	MKTSLIALGMASALAAATPAPTLAQGVYVGPGGVGV
Ga0134127_110784671	3300010399	Terrestrial Soil	MWIKSSLIALGFAGAMVASTPAPAPAQGVHVGPGGVSVDVG
Ga0134123_122991321	3300010403	Terrestrial Soil	MWLKTSLAALGMVGALAAASPTPAVAQGVYIGPGGVG
Ga0137382_111986282	3300012200	Vadose Zone Soil	MWIKISLIALGTASALVAATPAPTLAQGVYIGPGGVGVDVGRPGWRERDYY
Ga0137377_119149601	3300012211	Vadose Zone Soil	MWIKTSLIARGTASALAAATPAPTLAQGVYIGPGGVGGDVGRPG
Ga0150985_1077615691	3300012212	Avena Fatua Rhizosphere	MWIKASLIAFGFVAATAAATPAPTLAQGVYVGPGGVSVDVGQPRYRERYR
Ga0150985_1198677331	3300012212	Avena Fatua Rhizosphere	MWIKTSLIALGLAGAMATATPVPTLAQGVHVGPGGVGIDIGRPGYRERHYR
Ga0150985_1204979091	3300012212	Avena Fatua Rhizosphere	MWIKASLVVLGLAGAMTAANPAPTLAQGVHIGPGGVGIDIGRPGYRERHYR
Ga0137358_102657493	3300012582	Vadose Zone Soil	MWIKTSLIALGTASALAAATPAPTLAQGVYIGPGGVGVDVGRPGWRERDYYRDDYTYERR
Ga0137404_112037741	3300012929	Vadose Zone Soil	MWIKTSLIALGLVGTMAAATPAPTLAQGVYIGPNGVGV
Ga0164301_107201711	3300012960	Soil	MWIKTSLIALGLAGAMVAATPAPTLAQGVYVGPGGVGIDIGRPGYRERHYR
Ga0164302_109068872	3300012961	Soil	MWIKTSLIALGTASALAAATPAPTLAQGVYIGPGGVGVDVGRPGWRE
Ga0164302_114705121	3300012961	Soil	MWIKASLIAVGFVAAMAAATPAPTLAQGVYVGPGGVSVDVGR
Ga0164308_102037543	3300012985	Soil	MWIKASLIAVGFVAATAAATPAPTLAQGVYVGPGGVSVD
Ga0164308_103163151	3300012985	Soil	MWIKTSLIALGLAGAMAAGTPAPTLAQGVHIGPGGVGIDIGRPSYRERHYRGGV
Ga0164305_112157751	3300012989	Soil	MWIKTSLIALGLAGTMAASTPAPTLAQGVHVGPGGV
Ga0163163_100114841	3300014325	Switchgrass Rhizosphere	MWIKASLIAVGFVAATAAATPAPTLAQGVYVGPGGV
Ga0157380_101393991	3300014326	Switchgrass Rhizosphere	MWIKASLIAVGFAAATAAATPAPTLAQGVYVGPGGVSVDVGQPRYRERYRGY
Ga0157376_104358223	3300014969	Miscanthus Rhizosphere	MWIKTSLIALGFAAATVAATPAPTLAQGVHIGPNGVGIDIGRPGYRERHYRGGVYDDY
Ga0137412_113023891	3300015242	Vadose Zone Soil	MWIKTSLIALGLVGAMTAAAPPTLAQGVHIGPDGVGVDIGRPGYRER
Ga0132256_1027748101	3300015372	Arabidopsis Rhizosphere	MWLKTSIIALGMASALAAATPAPTLSQGVYVGPGG
Ga0132256_1039233102	3300015372	Arabidopsis Rhizosphere	MWIKTSLIALGFAAATLAATPAPTLAQGVHIGPNGVGIDIGRPGYRERHYRGGVYDDYAYDR
Ga0132257_1003012924	3300015373	Arabidopsis Rhizosphere	MWIKTSVAALGIVGALAAATPAPTLAQGVYIGPGGVGVDTGRPDWRERRY
Ga0132257_1030983901	3300015373	Arabidopsis Rhizosphere	MWIKTSLVALGIVGAMTAATPTPILAQGVHIGPDGVGVDIGRPG
Ga0184608_101490861	3300018028	Groundwater Sediment	MWIKASLIAAGFVAATAAATPAPTLAQGVYVGPGGVSVDVGRPRYREH
Ga0190270_115607271	3300018469	Soil	MWIKTSLIALGLAGAMAAATPAPTVAQGVHIGPGGVGVDIGRPGYRERHYRGGA
Ga0193697_11375031	3300020005	Soil	MWIKASLIAAGFVAATAAATPAPTLAQGVYVGPGGVSVDVGRPRYREHYY
Ga0210392_107063931	3300021475	Soil	MWLKTSLAALGMMGALAAGTPTPALALDVHVGPGGVGVDT
Ga0210402_115202482	3300021478	Soil	MWIKISLIALGMASALAAATPAPTLAQGVYIGPGGVGVDVGRP
Ga0126371_105010421	3300021560	Tropical Forest Soil	MWLKTSLAALGMMGALAAATPAPTLAQGVYVGPGGVGIDTGRP
Ga0222622_103604811	3300022756	Groundwater Sediment	MWIKASLIAAGFVAATAAATPAPTLAQGVYVGPGGVSVDVGRPRYRDHY
Ga0247794_102607011	3300024055	Soil	MWIKTSLIALGFVGAMAAATPSPTLAQGVYVGPGGVGVDI
Ga0207710_101487883	3300025900	Switchgrass Rhizosphere	MWIKASLIAVGFVAATAAATPAPTLAQGVYVGPGGVS
Ga0207643_105941882	3300025908	Miscanthus Rhizosphere	MWIKTSLIALGFVGAMAAATPSPTLAQGVYVGPGGVGVDIGRPGYRERRYRGYDDYA
Ga0207662_100092601	3300025918	Switchgrass Rhizosphere	MWIKASLIAVGFVAATAAATPAPTLAQGVYVGPGGVSVDVGRPRYRE
Ga0207644_111319511	3300025931	Switchgrass Rhizosphere	MWIKTSLIALGLAGAMATATPAPTLAQGVHIGPGGVGIDIGRPGYRERHYRGGVY
Ga0207709_112257972	3300025935	Miscanthus Rhizosphere	MWIKASLIAVGFVAATAAATPAPTLAQGVYVGPGGVSVDVGRPRYRERYR
Ga0207689_106753701	3300025942	Miscanthus Rhizosphere	MWIKTSLIALGLAGAMAAGTPAPTLAQGVHIGPGGVGIDIGRPGYRERHYRGG
Ga0207679_102294444	3300025945	Corn Rhizosphere	MWIKASLIAVGFVAATAAATPAPTLAQGVYVGPGGVSVDVGRPRYR
Ga0207678_102433183	3300026067	Corn Rhizosphere	MWIKTSLIALGFAAATLAATPAPTLAQGVHIGPNGIGIDIGRPGYRERHYRGGV
Ga0207675_1015354312	3300026118	Switchgrass Rhizosphere	MWMKTSLIALGMASALAAATPTPTPAQGVHIGPGGVGIDVGRPGWRERHYRGHDAYAYE
Ga0208981_11682981	3300027669	Forest Soil	MWIKTSLIALGFAGALAAATPAPSLAQGVYIGPGGVGVDVGRPRYRERDYRGYDDYA
Ga0209488_111632551	3300027903	Vadose Zone Soil	MWMKTSLIALGMASALAAATPAPTLAQGVYVGPGGVGVDLGRPGWRERHYRGRDDYRGRDDYAYE
Ga0209382_107231031	3300027909	Populus Rhizosphere	MWIKTSLAALGIMGAMAAATPAPTLAQGVYVGPGG
Ga0268265_101235921	3300028380	Switchgrass Rhizosphere	MWIKASLIAVGFIAATAAATPAPTLAQGVYVGPGGV
Ga0268265_105349852	3300028380	Switchgrass Rhizosphere	MSIKASLIAVGFIAATAAATPAPTLAQGVYVGPGGVSVDVGR
Ga0307322_100193094	3300028710	Soil	MWIKTSLIALGLAGAMAATTPAPTLAQGVHVGPGGVSVDIGRPGYRE
Ga0307293_101749851	3300028711	Soil	MWIKASLIAAGFVAATAAATPAPTLAQGVYVGPGGVSVDVGRPRYREHYYRGYHDYA
Ga0307311_100839081	3300028716	Soil	MWIKASLIAAGFVAATAAATPAPTLAQGVYVGPGG
Ga0307286_100948732	3300028876	Soil	MWIKASLIAAGFVAATAAATPAPTLAQGVYVGPGGVSVDVGQPRYRERYRGYDDYAYD
Ga0307308_104820232	3300028884	Soil	MWIKTSLIALGTASALAAATPAPTLAQGVYIGPGGVGVDVG
Ga0308202_10729452	3300030902	Soil	MWIKASLIAAGFVAATAAATPAPTLAQGVYVGPGGVSVDVG
Ga0308206_10665991	3300030903	Soil	MWIKASLIAFGFVAATAAATPAPTLAQGVYVGPGGVSVDVGQPRYRERYRGYDDYAYDRR
Ga0308204_103021761	3300031092	Soil	MWIKACLIAVGFVAATAAATPSPTLAQGVYVGPGGVSVDVGQPRYRERYRGYDDYAYD
Ga0307500_102271751	3300031198	Soil	MWIKSSLIALGFAGAMVASTPAPAPAQGVHVGPGGVSVDVGRPRYR
Ga0310887_105097022	3300031547	Soil	MWIKASLIAVGFVAATAAATPAPTLAQGVYVGPGGVSVDV
Ga0307469_119049141	3300031720	Hardwood Forest Soil	MWIKSSLIALGFAGAMVASTPAPAPAQGVHVGPVGVSV
Ga0310900_115742022	3300031908	Soil	MWIKASLIAFGFVAATAAATPAPTLAQGVYVGPGGVSVDVGQPRYRERY
Ga0306926_118746211	3300031954	Soil	MWIKTSLAALGMMGALAAATPAPTLAQGVYVGPGGVGVDTGRPGW
Ga0307471_1043005551	3300032180	Hardwood Forest Soil	MWIKISLIALGMASALAAATPAPTLAQGVYIGPGGVGVDVGRPGWRE
Ga0307472_1006064023	3300032205	Hardwood Forest Soil	MWIKISLIALGMASALAAATPAPTLAQGVYIGPGGVGVDVGRPGWRERDYYRDDYTYE

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101616

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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