Metagenome Family F101664

Basic Information
Family ID	F101664
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	41 residues
Representative Sequence	QSRPPSELSDQLLSEIRLWQPASLAQQDDITLIVIDVV
Number of Associated Samples	93
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	1.96 %
% of genes from short scaffolds (< 2000 bps)	0.98 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Most Common Taxonomy
Group	Unclassified (98.039 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.765 % of family members)
Environment Ontology (ENVO)	Unclassified (28.431 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.098 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.21% β-sheet: 0.00% Coil/Unstructured: 78.79%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02585	PIG-L	1.96
PF02374	ArsA_ATPase	1.96
PF13180	PDZ_2	1.96
PF00479	G6PD_N	1.96
PF12704	MacB_PCD	1.96
PF02632	BioY	1.96
PF00106	adh_short	0.98
PF03320	FBPase_glpX	0.98
PF00579	tRNA-synt_1b	0.98
PF00456	Transketolase_N	0.98
PF13847	Methyltransf_31	0.98
PF01979	Amidohydro_1	0.98
PF01734	Patatin	0.98
PF00232	Glyco_hydro_1	0.98
PF00583	Acetyltransf_1	0.98
PF01113	DapB_N	0.98
PF07228	SpoIIE	0.98
PF00107	ADH_zinc_N	0.98
PF01593	Amino_oxidase	0.98
PF00805	Pentapeptide	0.98
PF14060	DUF4252	0.98
PF13701	DDE_Tnp_1_4	0.98
PF03544	TonB_C	0.98
PF00665	rve	0.98
PF04191	PEMT	0.98
PF00392	GntR	0.98
PF08388	GIIM	0.98
PF14559	TPR_19	0.98
PF05163	DinB	0.98
PF03476	MOSC_N	0.98
PF05694	SBP56	0.98
PF00355	Rieske	0.98
PF00144	Beta-lactamase	0.98
PF02310	B12-binding	0.98
PF07676	PD40	0.98
PF13424	TPR_12	0.98
PF13649	Methyltransf_25	0.98
PF00484	Pro_CA	0.98
PF00069	Pkinase	0.98
PF04095	NAPRTase	0.98
PF09603	Fib_succ_major	0.98
PF01855	POR_N	0.98
PF13378	MR_MLE_C	0.98
PF12867	DinB_2	0.98
PF13237	Fer4_10	0.98
PF03466	LysR_substrate	0.98
PF01814	Hemerythrin	0.98
PF13490	zf-HC2	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.92
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	1.96
COG1268	Biotin transporter BioY	Coenzyme transport and metabolism [H]	1.96
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	1.96
COG0021	Transketolase	Carbohydrate transport and metabolism [G]	0.98
COG0162	Tyrosyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.98
COG0180	Tryptophanyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.98
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.98
COG0674	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	0.98
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.98
COG1488	Nicotinic acid phosphoribosyltransferase	Coenzyme transport and metabolism [H]	0.98
COG1494	Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase or related protein	Carbohydrate transport and metabolism [G]	0.98
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.98
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.98
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.98
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.98
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	0.98
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.98
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.98
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	0.98
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.98
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.98
COG3959	Transketolase, N-terminal subunit	Carbohydrate transport and metabolism [G]	0.98
COG4231	TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	0.98
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.98
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.98

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.04 %
All Organisms	root	All Organisms	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.04 %
cellular organisms	root	All Organisms → cellular organisms	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.04 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.04 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Scaffold	Taxonomy	Length	IMG/M Link
3300010048\|Ga0126373_10051892	All Organisms → cellular organisms → Bacteria → Acidobacteria	3647	Open in IMG/M
3300017966\|Ga0187776_10424669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	894	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.06%
Host-Associated	Host-Associated	2.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.59%
Aquatic	Environmental → Aquatic	26.47%
Plants	Host-Associated → Plants	2.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.71%
Freshwater	Environmental → Aquatic → Freshwater	22.55%
Peat	Environmental → Terrestrial → Peat	4.90%
Sediment	Environmental → Aquatic → Sediment	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.94%
Marine	Environmental → Aquatic → Marine	0.98%
Cave	Environmental → Terrestrial → Cave	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.14%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	21.57%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.76%
Loam	Environmental → Terrestrial → Soil → Loam	9.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.98%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.80%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.98%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.76%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.84%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.86%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.88%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.96%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.96%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.98%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908035	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025500	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026847	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 20 (SPAdes)	Environmental	Open in IMG/M
3300027014	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)	Environmental	Open in IMG/M
3300027049	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 72 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027888	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033983	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B3_GZOS_CLC_01902080	2124908035	Soil	LEHVVRGSQSCSPSELSDRLLSEIRLWSPLSQQDDITLIVIDAV
INPgaii200_06178251	2228664022	Soil	SPSELPDELLSEIQIWQSASLAQQDDITLIVIDVV
F14TC_1065059261	3300000559	Soil	KLEQVVGNNQSRPPSELVDQLLSEIRRWQPASMAQQDDITLIVIDIV*
Ga0070698_1022279812	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	ENADGDSFGDSKFEQVVRDGQRSSPSDLSDRLLSEIHCWQPASLNQQDDITLIVIDAV*
Ga0070735_107624641	3300005534	Surface Soil	TPSELSEQLLSEIRLWQPARPGQQDDITLILIDVV*
Ga0070684_1020681242	3300005535	Corn Rhizosphere	GDSFGDKRLEDFVRCYQSCPPIEFSEKLLSELRQWQPASLSQQDDITLIVIDT*
Ga0066692_104374731	3300005555	Soil	RPPSELSDQLLSEIRIWQPALLDQQDDITLIVIDVV*
Ga0075017_1000283214	3300006059	Watersheds	MPGGSLSDDILSETRRWQPASATQQDDITLIVIDVL*
Ga0075014_1009393121	3300006174	Watersheds	DSFGDVKLEQVVRDGQRSSPSELSDQLLSAVRHWQPASITQQDDITLIVIDAV*
Ga0070712_1002332281	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	EFKFEQVVHNNQLRPPSELLDRLLTEIRHWQPASMAQHDDITLIAIDVL*
Ga0079221_117153181	3300006804	Agricultural Soil	KLEQVVRNNQSRPPSELSDQLLSEIRLWQPPSLAQQDDITLIVVDVV*
Ga0075435_1000394591	3300007076	Populus Rhizosphere	LKLEEVVRNNQSRPPSEMSDQLLSETRLWQPAGLGQQDDITLVVIDVV*
Ga0115026_102633304	3300009111	Wetland	SSSELVDQLLSQIRLWQPASSTQQDDITLIVVDVI*
Ga0116221_10329651	3300009523	Peatlands Soil	IRLEQVVRDNQGRPPSELSDRLLSEIRRWQPASISQQDDITLIVISP*
Ga0116114_10478561	3300009630	Peatland	INQSRPPAELSDQLLSEIRRWQPAATTQQDDITLVVIDVV*
Ga0116126_12674641	3300009640	Peatland	SRPPSELSEQLLAEIRQWQPASVTQQDDITLTIIDVV*
Ga0116219_102294671	3300009824	Peatlands Soil	KLEQVIRDNQSRPPSELLDQLLSEIRLWQPASLPQQDDITLIVIDVV*
Ga0116223_105664601	3300009839	Peatlands Soil	RDNQARSPSELSDELLAELRHWQPTSIAQQDDITLIVIDVV*
Ga0126373_100518925	3300010048	Tropical Forest Soil	QSCPPSELSDQLLSEIRLWQPASLAQQDDITLIVIDVV*
Ga0126373_102482793	3300010048	Tropical Forest Soil	APSELLDQLLGEIHRWQPASAAQHDDITVIVVDVV*
Ga0126372_132473961	3300010360	Tropical Forest Soil	QVVRNNQSRPASELLDQLMSEMRIWQPASLAQQDDITLIVIDVV*
Ga0136449_1042252311	3300010379	Peatlands Soil	NQSRPPSELCDQLLSEIRLWQPASLAQQDDITLIVVDVL*
Ga0126383_129391001	3300010398	Tropical Forest Soil	KLEEVVRNNQSGPPSELLDHLISEMSVWQPASLAQQDDITLIIIDVV*
Ga0126375_119079471	3300012948	Tropical Forest Soil	PPAELSEQMLSEMRAWQPPSLPQQDDITLVVIDVR*
Ga0181539_11566561	3300014151	Bog	DSFDDYKLEQVVRNNTSRSQSELVDQLLYEIRQWQPDSMVQQDDITLIVIDVV*
Ga0181521_105456591	3300014158	Bog	SRPPAELSEQLLSAIRHWQPASVTQQDDITLIIIDVV*
Ga0182036_103977401	3300016270	Soil	PPSELTDRLLNEIRVWQLPSMAQEDDITLIVIDVI
Ga0182041_107964482	3300016294	Soil	SRAPAELLDQLLAEIHRWQPASAAQHDDITLIVVDVV
Ga0182035_119627541	3300016341	Soil	TGDSFGDRKLEQVVRDNQSLPPSELSLSEIHVWQSASVAQQDDITLIVIDVV
Ga0182040_110288152	3300016387	Soil	PPSELLDQLLTEIRQWQPASKAQHDDITLIVIDVL
Ga0182037_114233851	3300016404	Soil	SAPGELLNQLLAEIHRWQPVSAAQQDDITLIVVDVV
Ga0182039_100722901	3300016422	Soil	KLEEVIRKNQSRPPAELLEQMLSEIRAWQPPSLPQQDDITLVVIDVR
Ga0182039_117443561	3300016422	Soil	RAPAELLDQLLAEIHRWQPASAAQHDDITLIVVDVV
Ga0187801_102553341	3300017933	Freshwater Sediment	GQRSSTSELSDRLLSAIRHWQPASITQQDDITLIVIDAV
Ga0187801_104161561	3300017933	Freshwater Sediment	VVRENQCCPSSELSDRLLSELRHWQPASTTQQDDITLIVIDVL
Ga0187803_104458382	3300017934	Freshwater Sediment	SFGDSKLEQVVRDGQRSSPSDLSDQLLSAVRHWQPASITQQDDITLIVIDAV
Ga0187848_102816062	3300017935	Peatland	RPPAELSEQLLSEVRHWQPASVTQQDDITLIIIDVV
Ga0187848_103455092	3300017935	Peatland	NNHSRPPSELAEQLLAEIRHWQPASVTQQDDITFIIIDVV
Ga0187854_100509982	3300017938	Peatland	EQVVRDNSLRPPSELSEQLLREIRLWQPASVTQQDDITLIVIDVV
Ga0187775_100549541	3300017939	Tropical Peatland	NNQSRPPSEMSDQLLSAIRLWRPAGLGQQDDITLIVIDVV
Ga0187808_104991201	3300017942	Freshwater Sediment	HPPSELSDRLLSELRHWQPASTTQQDDITLIVIDVL
Ga0187819_100939131	3300017943	Freshwater Sediment	RPPAELSEQLLSGIRQWRPASVPQQDDITLIIIDLV
Ga0187779_107404532	3300017959	Tropical Peatland	DSKLEQVVRKNRSCSPSELADQLISELRLWQPASAQQDDITLIIIDVF
Ga0187776_104246693	3300017966	Tropical Peatland	GDRKLEQVVRNNQSRQPSELSDQLLSEIRLWQPAPLVQQDDITLIVIDVV
Ga0187782_101607201	3300017975	Tropical Peatland	FGDFRLEQVVRDNHDRPASELSERLLSALQLWQPHSPSQQDDITLLVVDVV
Ga0187876_11891742	3300018003	Peatland	LEQVVRNNKSRPQSELVDQLLYEIRQWQPSSMVQQDDITLIVVDVV
Ga0187804_103066931	3300018006	Freshwater Sediment	QSRPPSELSDQLLSEIRLWQPASLAQQDDITLIVIDVV
Ga0187804_104199061	3300018006	Freshwater Sediment	GQRSSPSELSDQLLSAVRHWQPASITQQDDITLIVIDTV
Ga0187884_103908192	3300018009	Peatland	QSRPPSELSDQLLSEIRRWQPASITQQDDITLIIIDVA
Ga0187810_102255312	3300018012	Freshwater Sediment	VRNNQSRPSSELSDQLLFEIRLWQPASLAQQDDITLIVIDVL
Ga0187810_103981542	3300018012	Freshwater Sediment	PSSELSDRLLSELRHWQPASTTQQDDITLIVIDVL
Ga0187873_12546461	3300018013	Peatland	RLEQVVRHNQCRLSSELSDQLLSEIRHWQPAPVTQQDDITLIIIDVV
Ga0187872_102247941	3300018017	Peatland	PPSELSKQLLSEIRHWQPASMNQQDDITLIIIDVV
Ga0187889_100532051	3300018023	Peatland	RDNSLRPPSELSEQLLREIRLWQPASVTQQDDITLIVIDVV
Ga0187766_112008491	3300018058	Tropical Peatland	HQGRPAPELAELLLAELRAWQPAGVTQQDDITLIVIDVL
Ga0187772_100786662	3300018085	Tropical Peatland	VVRENQGRPPSALSDVLLAELRRWQPASTAQQDDITLIVIDVL
Ga0187769_101736901	3300018086	Tropical Peatland	RSHQSRSPSELSDQLLSEIRLWQPASLPQQDDITLIVIDVV
Ga0187774_106856382	3300018089	Tropical Peatland	DHKLEQVVRNNQPLPPSEFSTELLTEIRRWQPASMPQQDDITLIVIDVV
Ga0210399_102285812	3300020581	Soil	RDNQSRSPSELSEQLLSEIRVWQSASVAQQDDITLIVIDVV
Ga0210399_110855841	3300020581	Soil	VVRRNRSLAPSELSHKLLAEIRQWQPASVTQHDDITLIVIDVTI
Ga0210404_102871763	3300021088	Soil	SRPPSELSDQLLSEIRLWQPASLAQHDDITLIVIDVL
Ga0187846_104353641	3300021476	Biofilm	QICPASELIERLLAEVRAWQPAALAQQDDITLIVIDVT
Ga0126371_119801801	3300021560	Tropical Forest Soil	RPPSELSEQVLSEIRVWQSASVAQQDDITLIVIDVI
Ga0126371_124302492	3300021560	Tropical Forest Soil	EQVVRDNQSRPPSELSEQLLSEIRVWQSASVAQQDDITLIVIDVV
Ga0207928_10016425	3300025494	Arctic Peat Soil	SFGDLKLEQVVRGNQLCTASELSEHLLAEVRNWQPASMTQQDDITLLVIDVL
Ga0208686_10010971	3300025500	Peatland	EVVCKGHSLSSPEVSDRLLSELQHWQPASAPQQDDITLIVIDVL
Ga0207671_103007504	3300025914	Corn Rhizosphere	HSPAALSDRMLAEIRHWQPASLSQQDDITLIVIDVI
Ga0207693_106802613	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	DLKLEEVVRNNQSRPPSEMSDQLLSETRLWQPAGLGQQDDITLVVIDVV
Ga0207679_114083453	3300025945	Corn Rhizosphere	NQSRPPSELSDQLLSEISLWQPAALEQQDDITLIVIDVS
Ga0207802_10112191	3300026847	Tropical Forest Soil	RPPSELLDQLLTEIRHWQPASKAQHDDITLIVIDVL
Ga0207815_10318031	3300027014	Tropical Forest Soil	GPAELLDQLLAEIHRWQPASAAQHDDITLIVVDVI
Ga0207806_10177173	3300027049	Tropical Forest Soil	NQSRPPSELLDQLLTEIRHWQPASKAQHDDITLIVIDVL
Ga0209214_10619452	3300027071	Forest Soil	KNQSRPPGELLEQMLWEIRAWQPASLPQQDDITLVLIDVR
Ga0209635_111049421	3300027888	Marine Sediment	EQVIRKNQSCPPSELVDLLLSEIRLWQPASNEQQDDITLVIVDVI
Ga0209698_1000878610	3300027911	Watersheds	MPGGSLSDDILSETRRWQPASATQQDDITLIVIDVL
Ga0209526_102168152	3300028047	Forest Soil	DRKLEQVVRNNQSRPPSELSDQLLSEIRLWQPASLAQQDDITLIVIDVV
Ga0311350_109157611	3300030002	Fen	KTPAELSDALLREIDHWRPASAPQQDDITLVVVDVV
Ga0311349_121745691	3300030294	Fen	NQSRTPAELAHDLLREIDHWRPASVPQQDDITLVVIDVA
Ga0170823_127034111	3300031128	Forest Soil	PPSELLDRLLTEIRHWQPASMAQHDDITLIAIDVL
Ga0318541_100229871	3300031545	Soil	SLPSELSKQLLSEIRVWQSASVAQQDDITLIVIDVL
Ga0310915_100190121	3300031573	Soil	SRPPAELLEQMLSEIRAWQPPSLPQQDDITLVVIDVR
Ga0318561_100526931	3300031679	Soil	AVLRDVQSRPPSEVSTCLLREIGSWQPSQTSQQDDITLIVIDVV
Ga0307475_104493702	3300031754	Hardwood Forest Soil	RAPSELLDQLLSEIRQWQPASMAQRDDITLIAIDIL
Ga0318537_103382171	3300031763	Soil	LEAVLRDVQSRPPSEVSTCLLREIGSWQPSQTSQQDDITLIVIDVV
Ga0307473_102446382	3300031820	Hardwood Forest Soil	KFEQVVRNNQLRPPSELLDRLLTEIRHWQPASMAQHDDITLIAIDVL
Ga0318567_104212932	3300031821	Soil	ARQPSEFIEQLLSEIRLWQPRTAAQHDDITLIVIDVI
Ga0310913_106051662	3300031945	Soil	APAELLDQLLAEIHRWQPASAAQHDDITLIVVDVV
Ga0306926_104941492	3300031954	Soil	EQVVRDNGSHAPAELLDQLLAEIHRWQPVSAAQQDDITLIVVDVV
Ga0307479_109357141	3300031962	Hardwood Forest Soil	DIRLEQSVRDNQLRPASELLERLLFEIHHWQPASITQQDDITLIVIDVG
Ga0310911_109354671	3300032035	Soil	NQSRPPAELLEQMLSEIRAWQPPSLPQQDDITLVVIDVR
Ga0318506_102066481	3300032052	Soil	NQSRPPSELLDQLLTEIRQWQPASKAQHDDITLIAIDII
Ga0311301_100724467	3300032160	Peatlands Soil	RPPSELLDQLLSEIRLWQPASLPQQDDITLIVIDVV
Ga0311301_104866683	3300032160	Peatlands Soil	FGDIALEQSVRDNQFRPASELSERLLSELHRWKPDSITQQDDITLIVIDVG
Ga0335069_113797061	3300032893	Soil	EVIRNNESRPSAELLEQMLTEIRAWQPGSLPPQQDDITLVVIDVG
Ga0335074_114684072	3300032895	Soil	ESQLLPSSELSDRLLSELRHWQPASPAQQDDITLIVIDVL
Ga0335073_102315981	3300033134	Soil	QSRPSSELLSQLLAEIHAWQPATLPQQDDITLLAIDVS
Ga0310914_106006913	3300033289	Soil	QSRPASELLDQLLTEIRQWQPASMAQHDDITLIVIDVV
Ga0326728_107419431	3300033402	Peat Soil	PPSELSEQLLSEIHHWQPAFVTQQDDITLIIIDVV
Ga0326727_105801531	3300033405	Peat Soil	VRNNHSRPPSELSEQLLSEIHHWQPAFVTQQDDITLIIIDVV
Ga0310810_112496851	3300033412	Soil	QGRPPSELPGQLLTEIEAWQPASLAQQDDITLLVIDVV
Ga0371488_0079262_1744_1887	3300033983	Peat Soil	QLEKIVRNNRSRLPAELSEELLSGIRHWRPASVPQQDDITLIVIDVV
Ga0370484_0212528_385_531	3300034125	Untreated Peat Soil	KRLENVLRGSQVYSPAELSDRMLAEIRQWQPASNSQQDDITLIIIDAV

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101664

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign