Metagenome / Metatranscriptome Family F101702

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101702
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	58 residues
Representative Sequence	MRKQIQVGSTVVVRLYDGREVEAKVTAIVDSVAGRKVHIAYGLIALKIDPEQIIREVR
Number of Associated Samples	58
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	28.71 %
% of genes near scaffold ends (potentially truncated)	22.55 %
% of genes from short scaffolds (< 2000 bps)	73.53 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.706 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.392 % of family members)
Environment Ontology (ENVO)	Unclassified (37.255 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (80.392 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.49% β-sheet: 39.53% Coil/Unstructured: 56.98%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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SCOP family	SCOP domain	Representative PDB	TM-score
b.34.13.0: Chromo domain-like	d3m9qa_	3m9q	0.82
b.34.9.1: Tudor/PWWP/MBT	d2g3ra2	2g3r	0.81
b.34.9.1: Tudor/PWWP/MBT	d2l8da1	2l8d	0.8
b.34.4.4: Electron transport accessory proteins	d3a8gb_	3a8g	0.78
b.34.4.4: Electron transport accessory proteins	d3hhtb_	3hht	0.78

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00072	Response_reg	6.86
PF01381	HTH_3	1.96
PF13191	AAA_16	0.98
PF00719	Pyrophosphatase	0.98
PF00196	GerE	0.98
PF03551	PadR	0.98
PF13462	Thioredoxin_4	0.98
PF00793	DAHP_synth_1	0.98
PF09509	Hypoth_Ymh	0.98
PF01741	MscL	0.98
PF01546	Peptidase_M20	0.98
PF00596	Aldolase_II	0.98
PF12728	HTH_17	0.98
PF01833	TIG	0.98
PF05638	T6SS_HCP	0.98
PF14329	DUF4386	0.98
PF10996	Beta-Casp	0.98
PF02353	CMAS	0.98
PF01266	DAO	0.98
PF13188	PAS_8	0.98
PF01068	DNA_ligase_A_M	0.98
PF13638	PIN_4	0.98
PF07862	Nif11	0.98
PF01844	HNH	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	0.98
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.98
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.98
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.98
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.98
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.98
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.98
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.98
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.98
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	0.98
COG3157	Type VI protein secretion system component Hcp (secreted cytotoxin)	Intracellular trafficking, secretion, and vesicular transport [U]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.71 %
All Organisms	root	All Organisms	35.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.71 %
cellular organisms	root	All Organisms → cellular organisms	34.31 %
Viruses	superkingdom	All Organisms → Viruses	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.71 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.71 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	22.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.71 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.80 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.80 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.92 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.98 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.80 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.92 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.98 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.80 %
Paludibaculum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum	0.98 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.98 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.98 %
Acidisarcina	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.80 %
Acidisarcina polymorpha	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	0.98 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	0.98 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.98 %
Variovorax boronicumulans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax boronicumulans	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908006\|FWIROz_GJ87FRN02GIX1C	Not Available	526	Open in IMG/M
3300001593\|JGI12635J15846_10004534	All Organisms → cellular organisms → Bacteria → Acidobacteria	11973	Open in IMG/M
3300001593\|JGI12635J15846_10011644	All Organisms → cellular organisms → Bacteria → Acidobacteria	7389	Open in IMG/M
3300001593\|JGI12635J15846_10285007	All Organisms → Viruses → Predicted Viral	1041	Open in IMG/M
3300001593\|JGI12635J15846_10540751	Not Available	683	Open in IMG/M
3300002245\|JGIcombinedJ26739_101493651	Not Available	571	Open in IMG/M
3300002245\|JGIcombinedJ26739_101740257	Not Available	523	Open in IMG/M
3300005602\|Ga0070762_10207967	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1200	Open in IMG/M
3300005602\|Ga0070762_10539366	Not Available	769	Open in IMG/M
3300005610\|Ga0070763_10168173	Not Available	1155	Open in IMG/M
3300005921\|Ga0070766_10400471	Not Available	899	Open in IMG/M
3300005944\|Ga0066788_10065730	Not Available	868	Open in IMG/M
3300005944\|Ga0066788_10092355	Not Available	744	Open in IMG/M
3300005994\|Ga0066789_10139428	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300006173\|Ga0070716_101625721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax boronicumulans	531	Open in IMG/M
3300006176\|Ga0070765_100456346	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	1198	Open in IMG/M
3300006176\|Ga0070765_100996838	Not Available	792	Open in IMG/M
3300006176\|Ga0070765_101224955	Not Available	709	Open in IMG/M
3300006176\|Ga0070765_101493090	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	636	Open in IMG/M
3300006176\|Ga0070765_102259565	Not Available	507	Open in IMG/M
3300006893\|Ga0073928_10006161	All Organisms → cellular organisms → Bacteria → Acidobacteria	16303	Open in IMG/M
3300006893\|Ga0073928_10147797	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1899	Open in IMG/M
3300012361\|Ga0137360_10179971	Not Available	1698	Open in IMG/M
3300012582\|Ga0137358_10054996	All Organisms → cellular organisms → Bacteria → Acidobacteria	2657	Open in IMG/M
3300012582\|Ga0137358_10468146	Not Available	850	Open in IMG/M
3300012917\|Ga0137395_11085184	Not Available	568	Open in IMG/M
3300014489\|Ga0182018_10000419	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	55533	Open in IMG/M
3300014489\|Ga0182018_10000548	All Organisms → cellular organisms → Bacteria	47995	Open in IMG/M
3300014489\|Ga0182018_10004395	All Organisms → cellular organisms → Bacteria → Acidobacteria	11867	Open in IMG/M
3300014489\|Ga0182018_10009961	Not Available	6897	Open in IMG/M
3300014489\|Ga0182018_10206180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1097	Open in IMG/M
3300014495\|Ga0182015_10048813	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	3106	Open in IMG/M
3300014501\|Ga0182024_10009783	All Organisms → cellular organisms → Bacteria	19729	Open in IMG/M
3300014501\|Ga0182024_10079794	All Organisms → cellular organisms → Bacteria	4885	Open in IMG/M
3300014501\|Ga0182024_10103584	Not Available	4134	Open in IMG/M
3300014501\|Ga0182024_10128371	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3611	Open in IMG/M
3300014501\|Ga0182024_10590689	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1392	Open in IMG/M
3300015242\|Ga0137412_10031116	All Organisms → cellular organisms → Bacteria → Acidobacteria	4356	Open in IMG/M
3300020579\|Ga0210407_11312980	Not Available	540	Open in IMG/M
3300020581\|Ga0210399_10611689	Not Available	901	Open in IMG/M
3300020582\|Ga0210395_10098392	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2164	Open in IMG/M
3300020583\|Ga0210401_10013782	All Organisms → cellular organisms → Bacteria	7844	Open in IMG/M
3300020583\|Ga0210401_10023983	All Organisms → cellular organisms → Bacteria	5844	Open in IMG/M
3300020583\|Ga0210401_10399395	Not Available	1237	Open in IMG/M
3300020583\|Ga0210401_10554316	Not Available	1011	Open in IMG/M
3300020583\|Ga0210401_10668014	Not Available	900	Open in IMG/M
3300020583\|Ga0210401_11090356	Not Available	657	Open in IMG/M
3300020583\|Ga0210401_11277579	Not Available	592	Open in IMG/M
3300021171\|Ga0210405_10274950	Not Available	1332	Open in IMG/M
3300021171\|Ga0210405_10782032	Not Available	732	Open in IMG/M
3300021401\|Ga0210393_10640506	Not Available	868	Open in IMG/M
3300021403\|Ga0210397_10186519	All Organisms → cellular organisms → Bacteria	1474	Open in IMG/M
3300021405\|Ga0210387_11410015	Not Available	599	Open in IMG/M
3300021406\|Ga0210386_10570089	Not Available	978	Open in IMG/M
3300021407\|Ga0210383_10075744	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	2814	Open in IMG/M
3300021407\|Ga0210383_10140925	All Organisms → cellular organisms → Bacteria	2046	Open in IMG/M
3300021420\|Ga0210394_10505708	Not Available	1063	Open in IMG/M
3300021432\|Ga0210384_10056853	Not Available	3541	Open in IMG/M
3300021432\|Ga0210384_10943387	Not Available	764	Open in IMG/M
3300021433\|Ga0210391_10094405	All Organisms → cellular organisms → Bacteria → Acidobacteria	2360	Open in IMG/M
3300021433\|Ga0210391_10353788	Not Available	1152	Open in IMG/M
3300021433\|Ga0210391_10869098	Not Available	704	Open in IMG/M
3300021474\|Ga0210390_10239244	Not Available	1537	Open in IMG/M
3300021474\|Ga0210390_10757995	Not Available	806	Open in IMG/M
3300021477\|Ga0210398_10619530	Not Available	878	Open in IMG/M
3300021559\|Ga0210409_10887619	Not Available	765	Open in IMG/M
3300021559\|Ga0210409_11351648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300022557\|Ga0212123_10025558	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6357	Open in IMG/M
3300023250\|Ga0224544_1035747	Not Available	702	Open in IMG/M
3300023250\|Ga0224544_1052095	Not Available	588	Open in IMG/M
3300025320\|Ga0209171_10078064	Not Available	2090	Open in IMG/M
3300026281\|Ga0209863_10046872	All Organisms → cellular organisms → Bacteria	1288	Open in IMG/M
3300026291\|Ga0209890_10214854	Not Available	611	Open in IMG/M
3300026467\|Ga0257154_1015774	Not Available	1071	Open in IMG/M
3300027528\|Ga0208985_1022011	Not Available	1233	Open in IMG/M
3300027605\|Ga0209329_1005122	All Organisms → cellular organisms → Bacteria	2292	Open in IMG/M
3300027648\|Ga0209420_1104062	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	805	Open in IMG/M
3300027676\|Ga0209333_1009243	Not Available	3038	Open in IMG/M
3300027676\|Ga0209333_1189516	Not Available	545	Open in IMG/M
3300027855\|Ga0209693_10226442	Not Available	918	Open in IMG/M
3300027867\|Ga0209167_10362718	Not Available	788	Open in IMG/M
3300027884\|Ga0209275_10319354	Not Available	865	Open in IMG/M
3300027884\|Ga0209275_10417434	Not Available	758	Open in IMG/M
3300027895\|Ga0209624_10855762	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300027895\|Ga0209624_10937512	Not Available	564	Open in IMG/M
3300027908\|Ga0209006_10221389	Not Available	1637	Open in IMG/M
3300028047\|Ga0209526_10287128	All Organisms → cellular organisms → Bacteria → Acidobacteria	1117	Open in IMG/M
3300028047\|Ga0209526_10819305	Not Available	574	Open in IMG/M
3300028906\|Ga0308309_10718427	Not Available	868	Open in IMG/M
3300028906\|Ga0308309_11242814	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300029636\|Ga0222749_10555578	Not Available	625	Open in IMG/M
3300031057\|Ga0170834_109777066	Not Available	609	Open in IMG/M
3300031057\|Ga0170834_110027761	Not Available	557	Open in IMG/M
3300031057\|Ga0170834_112256614	Not Available	694	Open in IMG/M
3300031057\|Ga0170834_112438680	Not Available	601	Open in IMG/M
3300031231\|Ga0170824_123054866	Not Available	535	Open in IMG/M
3300031715\|Ga0307476_10250593	Not Available	1293	Open in IMG/M
3300031720\|Ga0307469_11374568	Not Available	673	Open in IMG/M
3300031962\|Ga0307479_10148169	Not Available	2301	Open in IMG/M
3300031962\|Ga0307479_10277631	Not Available	1656	Open in IMG/M
3300031962\|Ga0307479_11437006	Not Available	648	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.10%
Aquatic	Environmental → Aquatic	4.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.14%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.92%
Peat	Environmental → Terrestrial → Peat	1.96%
Freshwater	Environmental → Aquatic → Freshwater	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.06%
Loam	Environmental → Terrestrial → Soil → Loam	30.39%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	15.69%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.20%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	29.41%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	15.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.86%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	15.69%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	13.73%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	5.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	4.90%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	3.92%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908006	Soil microbial communities from sample at FACE Site Metagenome WIR_Oz2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300023250	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FWIROz_01329480	2124908006	Soil	VAKQIHVGSMVIVRLHDGREVEAKITKIVDSVVGRKVHISFAVFALIVDEQQVIRPA
JGI12635J15846_1000453423	3300001593	Forest Soil	VRKQIQVGSTVVARLHDGRVVVAKVTQIVNSVAGRKAHIRFGAVALIVEVTQIVKAVT*
JGI12635J15846_100116449	3300001593	Forest Soil	MRKQIQVGLTVVARLYDGREVEAKVTAIVDSVAGKGSHHDGLIALKIDPEQIIREVR*
JGI12635J15846_102850072	3300001593	Forest Soil	MHKQIRVGSTVIARLYDGREVEVKITKIVDSVVRRKVHIAFGAFALIVDETQIIKVLS*
JGI12635J15846_105407512	3300001593	Forest Soil	MRRQIQIGSTAVVRLYDGRELVAKITTIVNGPAGQKVHIAFGAFALKIDPKQVIKTVQV*
JGIcombinedJ26739_1014936511	3300002245	Forest Soil	MKDLTRRKQIQIGSTVVARLYDGREVEARILQIVDSVAGRKVHIAYGLIALKIDPEQIIREVR*
JGIcombinedJ26739_1017402572	3300002245	Forest Soil	VPKLIQIGSTVLARLHDGREVEARITKIVDSVAGRRVHIAFGAFALIKNEAHIIRTLDE*
Ga0062389_1045645661	3300004092	Bog Forest Soil	VVARLYDGREVEAKVTRIVDSVTGRKVHIAYGLIALKIDPEQIIREVR*
Ga0070762_102079673	3300005602	Soil	ILVGSTVTARLHNGRVVVARVTAIVDSVAGRKVHIQFGAFALIVEEMQIIKEMQ*
Ga0070762_105393661	3300005602	Soil	QIQLGPTVLTRLHDGREVEARVTKIVDSVVGRKLHIAFGAFALIIAVVQIIRREVRP*
Ga0070763_101681731	3300005610	Soil	CLGCWIGSAQKMRKQIQIGSTVVVRLYDGREVEAKVTAIVDSVAGRKVHIAYGLIALKIEPEQIIREVR*
Ga0070766_104004712	3300005921	Soil	MRKQIKVGSTVVARLYDGREVEAKVTAIVDSVAGRKVHIAYGIIALKIDPEQIIREVR*
Ga0066788_100657301	3300005944	Soil	KQITVGHTVLVRLYDCREVKAKVTKIVDSVAGRKVHITYGIIALKVDETQIIKALS*
Ga0066788_100923552	3300005944	Soil	VPKQIQVGSTVLVRLHDDREVEAKITKIVDSVAGRKVHIQFGAFALKVDETQILKAVR*
Ga0066789_101394281	3300005994	Soil	QVGSTVLVRLHDDREVEAKITKIVDSVAGRKVHIQFGAFALKVDETQILKAVR*
Ga0070716_1016257211	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MLASTVPARFGDGRDVEAKVTKIVDSVLGRRARIAFGAFALIIDEVQIVREVRP*
Ga0070765_1004563462	3300006176	Soil	MRKQIQIGSTVVVRLYDGREVEAKVTAIVDSVAGRKVHIAYGLIALKIEPEQIIREVR*
Ga0070765_1009968382	3300006176	Soil	MPKQIVVGSTALVCLHDGREVEARITKIVDSVVGRRVHIAFGAFALIVNEAQIIRTLDE*
Ga0070765_1012249552	3300006176	Soil	MKQITVGQTVLVRLYDGREVEAKVTRIVDSVAGRKVHIAYGLIALKIDPEQIIREVR*
Ga0070765_1014930901	3300006176	Soil	VKRKQIQVASTVLARLYDGREVVAKITAIVNGPAGQEVHIAFGVRIED*
Ga0070765_1022595651	3300006176	Soil	VKKKQIDIGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKECKA
Ga0073928_1000616112	3300006893	Iron-Sulfur Acid Spring	MRKQIQVGSTVVVRLYDGREVEAKVTRIVDSVAGRKVHIAYGLLALKIDPEQIIREVR*
Ga0073928_101477972	3300006893	Iron-Sulfur Acid Spring	MKQLREQIQIGSTVVARLYDGREVEAKVTRIVDSVAGRKVHIAFGAFALIVEETQIIKEMR*
Ga0137360_101799713	3300012361	Vadose Zone Soil	VPKQVQVGSAVLVRLHDDREVEAKVTKIADSVAGRKVHIAFGAFALIVDETQIIKEMR*
Ga0137358_100549963	3300012582	Vadose Zone Soil	VSKQIQVGSTAIVRLHDGREVEAKITKIVDSVAGRKVHIQFGAFALIVEEAQIIKAIC*
Ga0137358_104681461	3300012582	Vadose Zone Soil	MRKQIQVGSTVVARLYDGREVEAKVTRIVDSVAGRKVHIAYGLIALKIDPEQIIREVR*
Ga0137395_110851842	3300012917	Vadose Zone Soil	MPTKQITIGSTVLVRLYDGREVKAKVTTIVDSVLGRKVHISYGVIALKVDATQIVRTVQ*
Ga0182018_100004197	3300014489	Palsa	VRKQIQVGSTVVVAKVTQIVDRVAGRKAHIRFGAVTLILEETQIVKAVA*
Ga0182018_100005484	3300014489	Palsa	MREQIQVGSTVVVRLYDGREVEAKVTAIVDSVAGRKVHITYGLIALKIDPEQIIREVR*
Ga0182018_1000439521	3300014489	Palsa	MRKQIQVGSTVVARLYDGREVEAKITAIVDSVAGRKVHIAYGLIALKIDPEQIIREVR*
Ga0182018_100099615	3300014489	Palsa	MRKQIRVGSTVVVRLYDGREVEAKVTAIVNGPAGQKVHIAFGAFALKIDPEQIIREVR*
Ga0182018_102061802	3300014489	Palsa	VKRKQIQVGSTVLARLYDGREVVAKITAIVNGPAGQKVHIAFGAFAVKIDPQQVIKVLP*
Ga0182015_100488136	3300014495	Palsa	MRKQIKVGSTVVARLYDGREVEAKVTAIMDSVAGRKVCIAYGFIALKIDPEQIIREVR*
Ga0182024_1000978315	3300014501	Permafrost	MRKQIQVGSTVVVRLYDGREVEAKITAIVDSVAGRKVHIACGLIALKIDPEQIIREVRC*
Ga0182024_100797942	3300014501	Permafrost	VRKQIQVGSTVVVRLYDGREVEATITKIVDSVVGRKVHITYGLKTLKIDPEQIIREVRC*
Ga0182024_101035845	3300014501	Permafrost	VRRQIQVGSTILARLHDERSVEAKITKIVDSVAGQRVHITFGASELKVDEKQIISEVRA*
Ga0182024_101283712	3300014501	Permafrost	MRKQIEVGSTAVVRLYDGREVEAKITAIVDSVAGRKVHITYGLIALKIDPEQVIREVR*
Ga0182024_105906892	3300014501	Permafrost	VRKQIQVGSTVVARLYDGREVEAKVTRIVDSVAGRKVHIACGLIALKIDPEQIIREVQ*
Ga0137412_100311161	3300015242	Vadose Zone Soil	VPKQVQVGSAVLVRLHDDREVEAKVTKIADSVAGRKVHIAFGASALIVDETQIIKEMR*
Ga0210407_113129802	3300020579	Soil	MPTKQITIGSTVLVRLYDGREVEAKVTAIVDSVLGRKVHISYGVIVLKVDATQIVRTVQ
Ga0210399_106116891	3300020581	Soil	VKSQITVGSTVLVRLHDGRKVEAKVTKIVDSVAGRKVHIAFGVFALIVGGTQIIREVKIQ
Ga0210395_100983922	3300020582	Soil	VRKQIQVGSTVVARLHDGRVVVAKVTQIVNSVAGRKAHIRFGAVALIVEVTQIVKAVT
Ga0210401_1001378212	3300020583	Soil	MGGKEESKVKKKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKECKA
Ga0210401_100239837	3300020583	Soil	VRKQVQVGSTVLVRLYDGREVEAKVTAIVNGPAGQKIHIATGPYALKIDPAQIIKEM
Ga0210401_103993951	3300020583	Soil	VKKQIDVSSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALLVD
Ga0210401_105543162	3300020583	Soil	VVKNIQVGSLDIVKLYDGRMVEAKVTAIVDSVIGRKVHVRFGPSALKVDASQIVI
Ga0210401_106680142	3300020583	Soil	VKKKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDAAQILKECKA
Ga0210401_110903562	3300020583	Soil	MPKQIVVGSTVIVCLHDGREVEAKVTKIVDSVAGRKVHIAFGVFALIVGGTQIIREVKIQ
Ga0210401_112775791	3300020583	Soil	KQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKEGKA
Ga0210405_102749502	3300021171	Soil	VKKQIDVGSTVTARLHDGRVVVAKVTAIVHSVAGRKVHITFGAFALIVDATQILKECKA
Ga0210405_107820323	3300021171	Soil	MGGKEESKVKKQIDVGSTVTARLHDGRVVVAKVTAIVDSVAGRKVHVTFGAFALIVDDTQIVRKCKT
Ga0210393_106405062	3300021401	Soil	KKAMGGKEESKVKKKQIDVGSTVTARLHDGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKECKA
Ga0210397_101865193	3300021403	Soil	VRKQIQVGSTVVVRLYDGREVEAKIMAIVDSVAGRKIHITYGIIALKIDPEQIIKTVQG
Ga0210387_114100151	3300021405	Soil	VPKQLQVGSTVLARLHDGREVEARVTRTEDSVAGRKVHTTFGPYAFKVEEKQKRLNRQSSNA
Ga0210386_105700894	3300021406	Soil	SKVKKKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKECKA
Ga0210383_100757445	3300021407	Soil	MEESVSRDRRPLLILVGSTVTARLHNGRVVVARVTAIVDSVAGRKVHIQFGAFALIVEEMQIIKEMQ
Ga0210383_101409254	3300021407	Soil	VGGKEESKVKKKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKECKA
Ga0210394_105057081	3300021420	Soil	IVVGSTVIVCLHDGREVEAKVTKIVDSVAGRKVHIAFGVFALIVGGTQIIREVKIQ
Ga0210384_100568534	3300021432	Soil	MPKQIQVGSAVIACLHDGREVEAKVTKIVDSVVGRKVHIAFGAFALKVDETQIVRKGGTK
Ga0210384_109433871	3300021432	Soil	VVVRLYDGREVEAKVTRIVDSVAGRKVHIAYGLIALKIDPEQIIRKVRCLRNP
Ga0210391_100944054	3300021433	Soil	VGRKEESKVKKKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDAAQILKECKA
Ga0210391_103537882	3300021433	Soil	MPTKQIILGSTVLVRLYDGREVIAKITAVVNGPAGQKVHITFGAFALKVDPAQIIKTVQHDTD
Ga0210391_108690982	3300021433	Soil	VKKKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKECKA
Ga0210390_102392442	3300021474	Soil	VPKQLPVGSTVLARLHNGREVEAKITKIVDSVAGRKVHIAFGAFALIIDEVQAIREVRT
Ga0210390_107579952	3300021474	Soil	VKKKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFALIVDATQILKECKA
Ga0210398_106195303	3300021477	Soil	LEQLQVGSTVLVRLDDGREVEAKITKIVDTVAGRKVHIAFGVFALIVTETQIIRTREE
Ga0210409_108876192	3300021559	Soil	MRKQIKVGSTVVARLYDGREVEAKVTAIVDSVAGRKVHIAYGIIALKIDPEQIIREVR
Ga0210409_113516481	3300021559	Soil	VRKQIQVGSTVVVRLYDGREVEAKITKIIDSVAGRKVHIAFGVFALMVTE
Ga0212123_100255584	3300022557	Iron-Sulfur Acid Spring	MRKQIQVGSTVVVRLYDGREVEAKVTRIVDSVAGRKVHIAYGLLALKIDPEQIIREVR
Ga0224544_10357472	3300023250	Soil	MREQIQVGSTVVVRLYDGREVEAKVTAIVDSVAGRKVHITYGLIALKIDPEQIIREVR
Ga0224544_10520952	3300023250	Soil	MRKQIQVGSTVVARLYDGREVEAKITAIVDSVAGRKVHIAYGLIALKIDPEQIIREVR
Ga0209171_100780645	3300025320	Iron-Sulfur Acid Spring	MRKQIQIGSTVVARLYDGREVEAKVTRIVDSVAGRKVHIAFGAFALIVEETQIIKEMR
Ga0209863_100468722	3300026281	Prmafrost Soil	VPKQIQVGSTVLVRLHDDREVEAKITKIVDSVAGRKVHIQFGAFALKVDETQILKAVR
Ga0209890_102148541	3300026291	Soil	QVGSTVLVRLHDDREVEAKITKIVDSVAGRKVHIQFGAFALKVDETQILKAVR
Ga0257154_10157742	3300026467	Soil	VRKQIQVGSKAVVRLYDGREVDAQITAIVNGPAGQKVRIAFGAFALKVDPQQIIRTIQ
Ga0208985_10220114	3300027528	Forest Soil	MRKQIQVGSTVVARLYDGREVEARITAIVDSVAGRKVHIAYGLIALKIDPERIIREVR
Ga0209329_10051222	3300027605	Forest Soil	MPKQILVGSTVLARLHDGREVEAKVTKIVDSVAGRKVHIQFGAFALKISAEQIIKSVR
Ga0209420_11040622	3300027648	Forest Soil	MRRQIQIGSTAVVRLYDGRELVAKITTIVNGPAGQKVHIAFGAFALKIDPKQVIKTVQV
Ga0209333_10092431	3300027676	Forest Soil	KIVRKQIQVGSTVVARLHDGRVVVAKVTQIVNSVAGRKAHIRFGAVALIVEVTQIVKAVT
Ga0209333_11895162	3300027676	Forest Soil	VRKQIQVGSTVVARLYDGREVEAKITAIVNGPAGQKVHIAFGAFALKIDPKQVI
Ga0209693_102264423	3300027855	Soil	MPKQIVVGSTALVCLHDGREVEARITKIVDSVVGRRVHIAFGAFALIVNEAQIIRMLDE
Ga0209167_103627183	3300027867	Surface Soil	VKKKQIDIGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKEGKA
Ga0209275_103193542	3300027884	Soil	ILVGSTVTARLHNGRVVVARVTAIVDSVAGRKVHIQFGAFALIVEEMQIIKEMQ
Ga0209275_104174342	3300027884	Soil	VPKQIQVGSAVLVRLHDDREVEAKVTKIVDSVAGRRVHIAFGAFALIVNEAQVIRTLDE
Ga0209624_108557621	3300027895	Forest Soil	LRKNIQVGSTVVVRLYDGREVEAKITKIIDSVAGRKVHIAFGVFALVVRETQIIRTR
Ga0209624_109375121	3300027895	Forest Soil	VGRKEESKVKKKQIDVGSTVTAPLHNGRVVVAKVTVIIDSVAGQKVHITFGAFALIVDDTQIVKECKA
Ga0209006_102213892	3300027908	Forest Soil	MPKQLQAGSTVLACLRDGREVEAKITKIVDSVAGRKVHIAFGAFALIIDEMKVIREGGHD
Ga0209526_102871281	3300028047	Forest Soil	MTWLQYGEKQTLTDLTPLKQIQIGSTVVVRLYDDREVEAKVTRIVDSVAGRKVHIAYGLIALKIDPEQIIREVR
Ga0209526_108193051	3300028047	Forest Soil	LTRLHDGREVEARATKIVDSVVGRKLHIAFGAFALIIDVVQIIRREVRP
Ga0308309_107184271	3300028906	Soil	MRKQIQIGSTVVARLYDGREVEAKVTAIVDSVAGRKVHIAYGLIALKIEPEQIIREVR
Ga0308309_112428141	3300028906	Soil	VKRKQIQVASTVLARLYDGREVVAKITAIVNGPAGQEVHIAFGVRIED
Ga0222749_105555782	3300029636	Soil	MPKQIVVGSTVIVCLHDGREVEAKVTKIVDSVAGRKVHIAFGVFALIVGGTQII
Ga0170834_1097770662	3300031057	Forest Soil	MGGKEESKVKKQIDVGSTVTARLHDGRVVVAKVTSVVDSVAGRKVHITFGAFALIVDATQILKECKA
Ga0170834_1100277612	3300031057	Forest Soil	MLASTVPARFDDGREVEAKVTKMVDSVLGRRARIAFGAFALIIDEVQIVREVRP
Ga0170834_1122566141	3300031057	Forest Soil	KQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQVLKECKA
Ga0170834_1124386801	3300031057	Forest Soil	MSTKQITIGSTVLVRLYDGREVEAKVTAIVDSVLGRKVHISYGVIALKVEATQIVRTVQRSNPS
Ga0170824_1230548661	3300031231	Forest Soil	VKKQIDVGSTVTARLHDGRVVVAKVTSVVDSVAGRKVHITFGAFALIVDATQVLKECKA
Ga0307476_102505932	3300031715	Hardwood Forest Soil	MGGKEESKVKKQIDVGSTVTARLHDGRVVVAKVTSVVDSVAGRKVHITFGAFALIVDDTRIVRECKA
Ga0307469_113745682	3300031720	Hardwood Forest Soil	MARRIAVGTAVTVRLHDGGEVEAKVTKIVDSDAGRKVQIAFGPQAFRVDETQIIEEMRGG
Ga0307479_101481692	3300031962	Hardwood Forest Soil	MPTKQITIGSTVLVRLYDGREVEAKVTAIVDSVLGRKVHISYGVIALKVDATQIVRTVQ
Ga0307479_102776315	3300031962	Hardwood Forest Soil	MPKQIQVGSTVIACLHDGREVEAKVTEIVDSVVGRKVHIAFGAFALIVKEAQIIRALED
Ga0307479_114370061	3300031962	Hardwood Forest Soil	MRKQIQVGSTVVVRLYDGREVEAKVTAIVDSVAGRKVHIAYGLIALKIDPEQIIREVR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101702

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences