Metagenome / Metatranscriptome Family F101703

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F101703
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	47 residues
Representative Sequence	LMKLVEKKRKQHKDIVEVEEPERDAGKVVDLMEVLKKSLAGKRKAA
Number of Associated Samples	93
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	16.67 %
% of genes from short scaffolds (< 2000 bps)	17.65 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (90.196 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (18.628 % of family members)
Environment Ontology (ENVO)	Unclassified (40.196 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.980 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.78% β-sheet: 0.00% Coil/Unstructured: 66.22%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00072	Response_reg	8.82
PF01370	Epimerase	4.90
PF00293	NUDIX	2.94
PF03465	eRF1_3	1.96
PF05598	DUF772	1.96
PF00903	Glyoxalase	1.96
PF00664	ABC_membrane	0.98
PF01258	zf-dskA_traR	0.98
PF03815	LCCL	0.98
PF07484	Collar	0.98
PF13307	Helicase_C_2	0.98
PF01176	eIF-1a	0.98
PF02735	Ku	0.98
PF10116	Host_attach	0.98
PF03734	YkuD	0.98
PF01344	Kelch_1	0.98
PF10601	zf-LITAF-like	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0361	Translation initiation factor IF-1	Translation, ribosomal structure and biogenesis [J]	0.98
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.98
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	0.98
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.20 %
All Organisms	root	All Organisms	9.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.20 %
cellular organisms	root	All Organisms → cellular organisms	9.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.20 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	9.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.20 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.20 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.98 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Pseudomonas fluorescens group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Pseudomonas fluorescens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas fluorescens	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005438\|Ga0070701_10983764	Not Available	587	Open in IMG/M
3300005546\|Ga0070696_101033686	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300005569\|Ga0066705_10676807	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300006800\|Ga0066660_11185383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas fluorescens	600	Open in IMG/M
3300006904\|Ga0075424_102264297	Not Available	571	Open in IMG/M
3300007076\|Ga0075435_101914747	Not Available	520	Open in IMG/M
3300009012\|Ga0066710_101926922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	883	Open in IMG/M
3300010043\|Ga0126380_10374764	All Organisms → cellular organisms → Bacteria → Acidobacteria	1046	Open in IMG/M
3300010047\|Ga0126382_11966549	Not Available	555	Open in IMG/M
3300010400\|Ga0134122_12855297	Not Available	536	Open in IMG/M
3300010403\|Ga0134123_11282975	Not Available	767	Open in IMG/M
3300010403\|Ga0134123_11453663	All Organisms → cellular organisms → Bacteria → Acidobacteria	728	Open in IMG/M
3300011271\|Ga0137393_11602619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	540	Open in IMG/M
3300012212\|Ga0150985_110958955	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300012532\|Ga0137373_10152357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1950	Open in IMG/M
3300031231\|Ga0170824_102425114	Not Available	601	Open in IMG/M
3300031847\|Ga0310907_10456553	Not Available	676	Open in IMG/M
3300034147\|Ga0364925_0097020	All Organisms → cellular organisms → Bacteria → Acidobacteria	1043	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.49%
Host-Associated	Host-Associated	24.51%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.51%
Plants	Host-Associated → Plants	24.51%
Aquatic	Environmental → Aquatic	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.53%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.76%
Sediment	Environmental → Aquatic → Sediment	0.98%
Floodplain	Environmental → Terrestrial → Floodplain	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.82%
Loam	Environmental → Terrestrial → Soil → Loam	6.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	22.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	18.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300024186	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1000890551	3300000955	Soil	KLLKLVEKKRKQHKNIVEVDVPEQEEGKVVDLMEALKKSLAGKRKAA*
JGI1027J12803_1092217862	3300000955	Soil	LKDEQTEKLLKLVARKRKQHKDVVEVEVPEQEPGKVVDLMAALKKSLAGKRRAA*
Ga0066680_105424292	3300005174	Soil	EQTEKLLKLVAKKRKQHKDIVEVEAPERTEGKVVDLMAALKKSLAGKRRVA*
Ga0066690_100815901	3300005177	Soil	KTEQLLKLVEKKRKQQKDIVEVEEPEHEQGKVVDLMEVLKKSLAGKRKAA*
Ga0066671_101957401	3300005184	Soil	EQTEKLLKLVEKKRKQHKDVVEVEVPEREEGKVVDLMAALKKSLAGKRRAA*
Ga0070675_1013842371	3300005354	Miscanthus Rhizosphere	KLLKLVERKRRQHKAVVKVEVPERADGKVIDLMAALKKSLAGKRKAA*
Ga0070671_1006129071	3300005355	Switchgrass Rhizosphere	KLLKLVEKKRKQHKDLVEVELPEQEPAKVVDLMEALKKSLAGKRQAA*
Ga0070674_1019393061	3300005356	Miscanthus Rhizosphere	LKLVERKRKQHKDIIEVEVPEREAGKVIDLMAALKKSLAGKRKAA*
Ga0070688_1001457691	3300005365	Switchgrass Rhizosphere	KRKQHKDVVQVEVPERQEGKVIDLMAALKKSLAGKRKAA*
Ga0070701_109837642	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	LKELKDEKTEQLMKLVEKKRKQHKDIVEVTEPERDGGKVVDLMEVLKKSLAGKRKAA*
Ga0066689_101523662	3300005447	Soil	VEKKRKQHKDVVEVEEPEERAQGKVVDLVEVLKRSLARKQKAA*
Ga0066689_107951782	3300005447	Soil	KLVEKKRKQHKDLVEVEEPEHAEGKVIDLMEVLKKSLAGKRKAA*
Ga0066681_105405381	3300005451	Soil	EKKRKQHKDIVEVEVPEREEGKVVDLMAALKKSLAGKRRAA*
Ga0068867_1018947442	3300005459	Miscanthus Rhizosphere	ELKDEQTGKLLKLVEKKRKQRKDIVEVEVPEEEQGKVVDLMEALKKSLAGKRKAA*
Ga0070686_1005560223	3300005544	Switchgrass Rhizosphere	LVEKKRKQRKDIVEVEVPEREEGKVIDLMEVLKKSLAGKRKAA*
Ga0070696_1010336862	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	DLKDEKTAQLLKLVEKKRKQHKDVVEVEVTERDDGKVVDLMEVLKKSLAGKRKAAA*
Ga0070696_1010805001	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	KDEKTAQLLKLVEKKRKQHKDVVEVEEPDRDEGKVVDLMEVLKKSLARKRKAA*
Ga0066698_103946543	3300005558	Soil	EELLKLIEKKRKQHKDVVEVEEPEEREGGKVVDLVEVLKRSLARKQKAA*
Ga0066699_106388531	3300005561	Soil	VEKKRKQHKDVVEVEEPEERAQGKVVDLVEVLKQSLARKQKAA*
Ga0066705_106768072	3300005569	Soil	KDLKDEQTEKLLKLVEKKRKQHKDVVEVEVPEREEGKVVDLMAALKKSLAGKRRAA*
Ga0066706_112606661	3300005598	Soil	EKTEKLLKLVAKKHKQHKDLVEVEEPEREEGKVVDLMEVLKRSLAGKRKAA*
Ga0070702_1012171282	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	ADLLKLVEKKRKQHKDIIEVEAPDREEGKVIDLMEVLKKSLAGKRKAA*
Ga0068859_1016513801	3300005617	Switchgrass Rhizosphere	LKLVEKKRKQHKDLVEVELPEQEPAKVVDLMEALKKSLAGKRKAA*
Ga0068861_1026079621	3300005719	Switchgrass Rhizosphere	QHKDIVEVEVPERDDGKVVDLMEVLKKSLAGKRKAA*
Ga0068862_1016406661	3300005844	Switchgrass Rhizosphere	KRKQHKDVVEVEEADRDEGKVVDLMEVLKKSLAGKRKAA*
Ga0070716_1015851141	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LIEKKRARHQDVVEVDEPDRDEGKVVDIMTALKKSLAKKRKAA*
Ga0066665_105149633	3300006796	Soil	EKKRKQHKDVVQVEEPEREEGKVVDLMEVLKKSLAGKRKAA*
Ga0066659_106075401	3300006797	Soil	KLIEKKRARHQDVVEVEETKRDEGKVVDIMEALKKSLARKRKAA*
Ga0066660_111853832	3300006800	Soil	KLVEKKRKQHKDVVEVEEPEERAHGNVVDLVEVLKKSLARKQKAA*
Ga0079220_121586361	3300006806	Agricultural Soil	LMKLVEKKRKQHKDIVEVEEPERDAGKVVDLMEVLKKSLAGKRKAA*
Ga0075433_110838432	3300006852	Populus Rhizosphere	QHKDIVEVEEPERDEGKVVDLMEVLKKSLAGKRKAA*
Ga0068865_1010050751	3300006881	Miscanthus Rhizosphere	EKLLKLVEKKRKQHKDMVEVEVPEREPGKVVDLMEALKKSLAGKRKAA*
Ga0075424_1022642971	3300006904	Populus Rhizosphere	LTHLKDVQTDQLLKLIEKKRAHHKDVVEVELPERKQEKVVDLMEVLKRSLQGKKRKTA*
Ga0079219_115481072	3300006954	Agricultural Soil	RKQHKDIVEVEEPERDAGKVVDLMEVLKKSLAGKRKAA*
Ga0075435_1019147472	3300007076	Populus Rhizosphere	SLQGLKDEQTEKLLKLVERKRKQHKDIVEVEVPEEEQGKVVDLMAALKKSLAGKKRAA*
Ga0066710_1019269221	3300009012	Grasslands Soil	HLSLKELKDEKAADLLQLVEKKRKQHKDVVEVEEPEERAQGKVVDLVEVLKRSLARKQKA
Ga0099829_112665991	3300009038	Vadose Zone Soil	LLKLVEKKRKQHKDVVEVEEPERDEGKVVDLMEVLKKSLARKRKTAA*
Ga0099830_109545051	3300009088	Vadose Zone Soil	LVEKKRKQHKDVVEVEETDRDEGKVVDLVEVLKKSLAGKRKAAA*
Ga0099827_119195382	3300009090	Vadose Zone Soil	ARHKDVVEVETPRRDEGKVIDLMEVLKKSLARKKRAA*
Ga0075423_102548251	3300009162	Populus Rhizosphere	LVEKKRSRHKDVVEVEVPARSQEEKVVDLMEVLKRSLAGGKKKRRAS*
Ga0126380_103747642	3300010043	Tropical Forest Soil	LSLKDLKDEQTEKLLKLVDRKRKQRQNVVEVEVPERKEGKVVDLMVALKKSLAGKRKAA*
Ga0126382_104817361	3300010047	Tropical Forest Soil	QHKDVVEVEVPEREEGKVVDLMAALKKSLAGKRKAA*
Ga0126382_119665492	3300010047	Tropical Forest Soil	PQSLKDEQTKKLLQLVERKRKQHKDVVEVEVPDQEEGKVVDLMAALKRSLAGKRKAA*
Ga0134062_101539422	3300010337	Grasslands Soil	EKKRKQHKDIVEVEEPERNKGKVIDLVEVLKRSLAGKRKAAA*
Ga0126370_109566081	3300010358	Tropical Forest Soil	KQAKHKDVVEVDEPAGEGERSNVVDIMEVLKKSMASKR*
Ga0126383_103377091	3300010398	Tropical Forest Soil	KQHQDVIEVEVPAQEEGKVVDLMEALKKSLAGKRRAA*
Ga0134127_131380322	3300010399	Terrestrial Soil	HKDIVEVDVPEQEQGKVVDLMAALKKSLAGKRKAA*
Ga0134122_128552971	3300010400	Terrestrial Soil	ELKDEKTAALLKLVEKKRKQHKDIVEVEVPEREEGKVIDLMEVLKKSLAGKRKAA*
Ga0134123_112829753	3300010403	Terrestrial Soil	KELKDEKTADLLKLVEKKRKQHKDIVEVEVPEREEGKVVDLMEVLKKSLAGKRKAA*
Ga0134123_114536632	3300010403	Terrestrial Soil	LSELKDEQTEKLRKLVEKKRKQHKDVVEVEVPEQEPGKVVDLMEALKKSLAGKRKAA*
Ga0137391_104257302	3300011270	Vadose Zone Soil	MLVEKKRQQHKDVIEVEEPERDEGKVVDLMEVLKKSLARKRKAAA*
Ga0137393_116026191	3300011271	Vadose Zone Soil	ELKDEKTDQLLKLIAKKRARHKDVVEVEEPERDEGKVVDIMEALKKSLAKKRKAA*
Ga0137457_11516921	3300011443	Soil	AEKLLKLVERKRKQHKDVVQVEVPEREEGKVIDLMAALKKSLAGKRKAA*
Ga0137389_106621882	3300012096	Vadose Zone Soil	HKDVVEVEEPERDEGKVVDLMEVLKKSLARKRKTAA*
Ga0137365_110939682	3300012201	Vadose Zone Soil	DLKDEQTEKLLKLVDKKRKQHKDIVEVEMPEREEGKVVDLMEALKKSLASKRKAA*
Ga0137376_105089191	3300012208	Vadose Zone Soil	KRARHKDIVEVEEPERDEGKVIDIMDALKKSLAKKRKAA*
Ga0150985_1109589552	3300012212	Avena Fatua Rhizosphere	ALKEFKDEQTAKLLKLVAKKRKQHKDVVEVEVPEQEQGKVVDLMAALKKSLAGKKRAA*
Ga0137367_100834471	3300012353	Vadose Zone Soil	KKRSRHKDVVEVEAPERDEGKVVDMMEALKKKLAQKRKAA*
Ga0137360_116959371	3300012361	Vadose Zone Soil	HKDVVEIEAPERDEGKVIDIMEALKKSLARKRKAA*
Ga0137373_101523571	3300012532	Vadose Zone Soil	KHLSLSELKDEKTEQLLKLVEKKRKQHKDVIEVEAPERDEGKVIDLMEVLKKSLAGKRKAAA*
Ga0137396_112688081	3300012918	Vadose Zone Soil	KDQKTDQLLKLIEQKRKRHKDLVEVEAPERNEGKVVDIMDALKRSMARKRKAA*
Ga0137359_105172001	3300012923	Vadose Zone Soil	DVVEVEMPARDEGKVVDLMAALKKSLVRKRKAAA*
Ga0137359_113399671	3300012923	Vadose Zone Soil	HKDVVEVETPRRDEGKVVDLMEVLKKSLARKKRAA*
Ga0137419_110845291	3300012925	Vadose Zone Soil	RKRHKDVVEVEAPERDEGKVVDIMDALKRSMARKRKAA*
Ga0137404_103033912	3300012929	Vadose Zone Soil	DLKGQQTEKLLKLVEKKRKQNKDIVEVEVPEREEGKVVDLMAALKKSLAGKRRAA*
Ga0137407_111635512	3300012930	Vadose Zone Soil	EKKRSRHKDVVKVEVPAHQREGKVVDLMEVLKRSLAGKKKRA*
Ga0164299_106141832	3300012958	Soil	LVERKRKQHKDIVEVDVPEEAQGKVVDLMAALKKSLAGKKRAA*
Ga0126369_127167651	3300012971	Tropical Forest Soil	KDEQTEKLLKLVERKRKDHKNLVEAEVKEREEGQVIDLMAALKKSLAGKRKAA*
Ga0126369_128167171	3300012971	Tropical Forest Soil	KLVKRKRKQHKDVVEVEVPEQKEGKVVDLMEALKKSLAGKRRAA*
Ga0137405_14126561	3300015053	Vadose Zone Soil	LKLVAKKHKQHKDLVEVEEPEREEGKVVDLMEVLKRSSPASAKAA*
Ga0137418_107512001	3300015241	Vadose Zone Soil	RARHKDVVQVEEPEREEGKVVDIMAALKKSLAGKRKAA*
Ga0132257_1014378183	3300015373	Arabidopsis Rhizosphere	LVEKKRKQHKDLVEVDEPERDEAKVVDLMEVLKKSLAGKRKAA*
Ga0132255_1030371351	3300015374	Arabidopsis Rhizosphere	KQHKDIVEVEEPARDEGKVVDLMEVLKKSLARKRKAAA*
Ga0190272_115475671	3300018429	Soil	HKDVVEVEEPARDEGKVVDLMEVLKKSLARKRKAA
Ga0066662_105760451	3300018468	Grasslands Soil	IEKKRKGHKDVVEVEAAERDEGKVVDIMEALKKSLARKRKAA
Ga0066662_115956302	3300018468	Grasslands Soil	KKRKQHKDIVEVEEPKREEGKVVDLMAALKKSLASKRKAA
Ga0247688_10902591	3300024186	Soil	EKLLKLVEKKRKQRKDIVEIEVPEREAGKVVDLMEALKKSLAGKRRAA
Ga0247667_11066942	3300024290	Soil	HKDVVEVEEPERDEGKVVDIMEALKKSLAKKRKAA
Ga0207654_109478271	3300025911	Corn Rhizosphere	ELKDEKTEQLMKLVEKKRKQHKDIVEVAEPERDWGKVVDLMEVLKKSLAGKRKAA
Ga0207644_114498911	3300025931	Switchgrass Rhizosphere	KLLKLVEKKRKQHKDLVEVELPEQEPAKVVDLMEALKKSLAGKRQAA
Ga0207686_102769071	3300025934	Miscanthus Rhizosphere	KLLKLVEKKRKQHKDIVEVEASEPEQGKVVDLMEALKKSLAGKRKAA
Ga0207709_104113251	3300025935	Miscanthus Rhizosphere	ELKDEKTADLLKLVEKKRKQHKDIVEVDVPEREEGKVIDLMEVLKKSLAGKRKAA
Ga0207704_106676261	3300025938	Miscanthus Rhizosphere	TEKLLKLVEKKRKQHKDMVEVEVPEREPGKVVDLMEALKKSLAGKRKAA
Ga0207651_106016872	3300025960	Switchgrass Rhizosphere	KKRKQHKDIVEVTEPERDGGKVVDLMEVLKKSLAGKRKAA
Ga0207651_116656722	3300025960	Switchgrass Rhizosphere	ERKRKQHKDIVEVEVPEEAQGKVVDLMAAFKKSLAGKKRAA
Ga0207676_107146002	3300026095	Switchgrass Rhizosphere	ARKRKQHKDIVEVEVPEQEQGKVVDLMAALKKSLAGKRRAA
Ga0209239_12097992	3300026310	Grasslands Soil	QHKDVVEVEEPEEREGGKVVDLVEVLKRSLARKQKAA
Ga0209153_10981092	3300026312	Soil	VEKKRKQHKDVVEVEVSEREEGKVVDLMAALKKSLAGKRRAA
Ga0209471_12620362	3300026318	Soil	NLLRLVEKKRKQHKDIVEVEEPEERAQGKVVDLVEVLKRSLARKQKAA
Ga0209266_12597391	3300026327	Soil	KKRKQHKDVVEVEEPEEREGGKVVDLIEVLKRSLARKQKAA
Ga0209376_12397502	3300026540	Soil	KLVAKKHKQHKDLVEVEEPEREEGKVVDLMEVLKRSLAGKRKAA
Ga0209177_102210693	3300027775	Agricultural Soil	EHLMKLVEKKRKQHKDVVKVEEPETGEGKVIDLMEVLKKSLAGKRRAA
Ga0268265_102137892	3300028380	Switchgrass Rhizosphere	ASKKNVVHVEVPEREEGKVVDLLEVLKKSLAGKKRAA
Ga0268264_126634182	3300028381	Switchgrass Rhizosphere	EKLLKLVERKRRQHKAVVKVEVPEREDGKVIDLMAALKKSLAGKRKAA
Ga0073994_123251181	3300030991	Soil	QKTDQLLKLIEKKRAQHKDVVEVETAERDEGKVVDIMDALKKSLARKRKAA
Ga0308189_103586762	3300031058	Soil	DEKTERMLKLIEKKRARHQNVVEVEESERDEGKVVDIMTALKQSLAKKRKAA
Ga0170824_1024251141	3300031231	Forest Soil	KELKDEQTEKLLKLVEKKRKQHKDVIEVEAPKQDQGQVVDLMAALKKSLTHKRNAA
Ga0170819_149701641	3300031469	Forest Soil	EKLLKLVEKKRKQHKDVIEVEAPKQDQGQVVDLMAALKKSLTHKRNAA
Ga0307473_103302341	3300031820	Hardwood Forest Soil	EKKRKQDKNVVEVEAPEREEGKVVDLMAALKKSLAGKRKAA
Ga0310907_104565532	3300031847	Soil	LSLKEFKDEQAEKLLKLVERKRKQHKDVVRVEVPERQEGKVIDLMAALKKSLAGKRKAA
Ga0310810_112135321	3300033412	Soil	EKTEQLMKLVEKKRKQHKDIVEVEEPARDEGKVVDLMEVLKKSLAGKRKAA
Ga0364925_0097020_13_186	3300034147	Sediment	LKDFKDEQAEKLLKLVERKRKQHKDVVEVEVPEREEGKVIDLMAALKKSLAGKRKAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101703

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences