Metagenome Family F101720

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101720
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	74 residues
Representative Sequence	MADVSEKVAGHLESMEADEILSRSSQVEKIDTVARRTFQLDNPAAGSGALNLNVLTGGRAIVQINQKNE
Number of Associated Samples	74
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.76 %
% of genes near scaffold ends (potentially truncated)	26.47 %
% of genes from short scaffolds (< 2000 bps)	85.29 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.686 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (30.392 % of family members)
Environment Ontology (ENVO)	Unclassified (44.118 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.843 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.05% β-sheet: 12.37% Coil/Unstructured: 52.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF09118	GO-like_E_set	4.90
PF03720	UDPG_MGDP_dh_C	2.94
PF00196	GerE	1.96
PF12951	PATR	1.96
PF00884	Sulfatase	1.96
PF00211	Guanylate_cyc	0.98
PF00589	Phage_integrase	0.98
PF04390	LptE	0.98
PF07995	GSDH	0.98
PF03721	UDPG_MGDP_dh_N	0.98
PF04932	Wzy_C	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.98
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.98
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.98
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.98
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.98
COG2980	Outer membrane lipoprotein LptE/RlpB (LPS assembly)	Cell wall/membrane/envelope biogenesis [M]	0.98
COG3307	O-antigen ligase	Cell wall/membrane/envelope biogenesis [M]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.69 %
Unclassified	root	N/A	34.31 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.69 %
Unclassified	root	N/A	34.31 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.69 %
Unclassified	root	N/A	34.31 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	48.04 %
Unclassified	root	N/A	34.31 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.96 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	48.04 %
Unclassified	root	N/A	34.31 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.98 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.98 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	36.27 %
Unclassified	root	N/A	34.31 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	6.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.98 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.27 %
Unclassified	root	N/A	34.31 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	5.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %
unclassified Spartobacteria	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria	0.98 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.98 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.98 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.27 %
Unclassified	root	N/A	34.31 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	5.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.98 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.98 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.98 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.27 %
Unclassified	root	N/A	34.31 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	5.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.98 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.98 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.98 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.27 %
Unclassified	root	N/A	34.31 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	5.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %
Streptomyces olivoverticillatus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces olivoverticillatus	0.98 %
Tenacibaculum	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum	0.98 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.98 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.27 %
Unclassified	root	N/A	34.31 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	5.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %
unclassified Tenacibaculum	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → unclassified Tenacibaculum	0.98 %
Streptomyces olivoverticillatus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces olivoverticillatus	0.98 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.98 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	36.27 %
Unclassified	root	N/A	34.31 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	5.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %
Tenacibaculum sp. M341	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → unclassified Tenacibaculum → Tenacibaculum sp. M341	0.98 %
Streptomyces olivoverticillatus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces olivoverticillatus	0.98 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.98 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c1768557	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517	Open in IMG/M
3300000559\|F14TC_100905790	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300000955\|JGI1027J12803_100697774	Not Available	1920	Open in IMG/M
3300000955\|JGI1027J12803_101002082	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	907	Open in IMG/M
3300000955\|JGI1027J12803_106311793	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	760	Open in IMG/M
3300000955\|JGI1027J12803_109325736	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300004016\|Ga0058689_10134057	Not Available	556	Open in IMG/M
3300004114\|Ga0062593_101472618	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	732	Open in IMG/M
3300004157\|Ga0062590_100497632	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1037	Open in IMG/M
3300004643\|Ga0062591_102582126	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300005171\|Ga0066677_10016868	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3301	Open in IMG/M
3300005171\|Ga0066677_10204510	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1106	Open in IMG/M
3300005172\|Ga0066683_10209569	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1204	Open in IMG/M
3300005175\|Ga0066673_10256176	Not Available	1014	Open in IMG/M
3300005177\|Ga0066690_10228093	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1245	Open in IMG/M
3300005178\|Ga0066688_10273617	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1085	Open in IMG/M
3300005179\|Ga0066684_10078830	All Organisms → cellular organisms → Bacteria	1968	Open in IMG/M
3300005179\|Ga0066684_10507028	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	809	Open in IMG/M
3300005180\|Ga0066685_10754460	Not Available	663	Open in IMG/M
3300005187\|Ga0066675_10711895	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	755	Open in IMG/M
3300005187\|Ga0066675_11309757	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	534	Open in IMG/M
3300005294\|Ga0065705_11139507	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514	Open in IMG/M
3300005355\|Ga0070671_100423527	Not Available	1140	Open in IMG/M
3300005434\|Ga0070709_11023410	Not Available	658	Open in IMG/M
3300005435\|Ga0070714_100233147	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1696	Open in IMG/M
3300005435\|Ga0070714_100717869	Not Available	965	Open in IMG/M
3300005436\|Ga0070713_100238375	All Organisms → cellular organisms → Bacteria	1656	Open in IMG/M
3300005436\|Ga0070713_100409961	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1267	Open in IMG/M
3300005437\|Ga0070710_10671247	All Organisms → cellular organisms → Bacteria → Terrabacteria group	728	Open in IMG/M
3300005439\|Ga0070711_100209409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces olivoverticillatus	1509	Open in IMG/M
3300005439\|Ga0070711_101700576	Not Available	553	Open in IMG/M
3300005447\|Ga0066689_10012384	All Organisms → cellular organisms → Bacteria → Proteobacteria	3925	Open in IMG/M
3300005450\|Ga0066682_10250722	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300005451\|Ga0066681_10528079	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	729	Open in IMG/M
3300005536\|Ga0070697_100767573	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	852	Open in IMG/M
3300005553\|Ga0066695_10005039	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6278	Open in IMG/M
3300005568\|Ga0066703_10473015	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	748	Open in IMG/M
3300005576\|Ga0066708_10105400	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1681	Open in IMG/M
3300005576\|Ga0066708_10553052	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	741	Open in IMG/M
3300006028\|Ga0070717_10430369	Not Available	1187	Open in IMG/M
3300006028\|Ga0070717_10685763	Not Available	931	Open in IMG/M
3300006046\|Ga0066652_101137607	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	739	Open in IMG/M
3300006046\|Ga0066652_101458730	Not Available	637	Open in IMG/M
3300006173\|Ga0070716_101038958	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	650	Open in IMG/M
3300006175\|Ga0070712_100076479	All Organisms → cellular organisms → Bacteria	2410	Open in IMG/M
3300006175\|Ga0070712_100857102	Not Available	782	Open in IMG/M
3300006175\|Ga0070712_100973369	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	733	Open in IMG/M
3300006797\|Ga0066659_10224105	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1391	Open in IMG/M
3300006797\|Ga0066659_10272916	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1277	Open in IMG/M
3300006797\|Ga0066659_10685168	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	837	Open in IMG/M
3300009012\|Ga0066710_101054642	Not Available	1256	Open in IMG/M
3300009012\|Ga0066710_102018690	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	854	Open in IMG/M
3300009137\|Ga0066709_104107818	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	530	Open in IMG/M
3300010320\|Ga0134109_10274902	Not Available	642	Open in IMG/M
3300010373\|Ga0134128_12663387	Not Available	551	Open in IMG/M
3300010396\|Ga0134126_12248942	Not Available	594	Open in IMG/M
3300012198\|Ga0137364_10785809	Not Available	719	Open in IMG/M
3300012201\|Ga0137365_11217031	Not Available	538	Open in IMG/M
3300012208\|Ga0137376_10422486	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1158	Open in IMG/M
3300012211\|Ga0137377_10564982	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1075	Open in IMG/M
3300012356\|Ga0137371_10862976	Not Available	689	Open in IMG/M
3300012922\|Ga0137394_10220454	All Organisms → cellular organisms → Bacteria	1622	Open in IMG/M
3300012977\|Ga0134087_10091337	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1263	Open in IMG/M
3300012977\|Ga0134087_10384525	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	679	Open in IMG/M
3300013296\|Ga0157374_12633607	Not Available	531	Open in IMG/M
3300013297\|Ga0157378_10514977	Not Available	1197	Open in IMG/M
3300014157\|Ga0134078_10036873	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1634	Open in IMG/M
3300015356\|Ga0134073_10076540	Not Available	948	Open in IMG/M
3300015356\|Ga0134073_10272378	Not Available	593	Open in IMG/M
3300015371\|Ga0132258_12980672	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1174	Open in IMG/M
3300015372\|Ga0132256_100131535	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2485	Open in IMG/M
3300018431\|Ga0066655_10002928	All Organisms → cellular organisms → Bacteria	6579	Open in IMG/M
3300018433\|Ga0066667_10007971	All Organisms → cellular organisms → Bacteria	4876	Open in IMG/M
3300018433\|Ga0066667_10014487	All Organisms → cellular organisms → Bacteria	3958	Open in IMG/M
3300018433\|Ga0066667_12214851	Not Available	512	Open in IMG/M
3300018468\|Ga0066662_10716843	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	957	Open in IMG/M
3300018468\|Ga0066662_11349618	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	734	Open in IMG/M
3300018482\|Ga0066669_10008340	All Organisms → cellular organisms → Bacteria	5084	Open in IMG/M
3300018482\|Ga0066669_10280245	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1339	Open in IMG/M
3300018482\|Ga0066669_12362218	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	509	Open in IMG/M
3300021344\|Ga0193719_10041002	Not Available	2006	Open in IMG/M
3300021344\|Ga0193719_10351746	Not Available	613	Open in IMG/M
3300021413\|Ga0193750_1000668	All Organisms → cellular organisms → Bacteria → Proteobacteria	9304	Open in IMG/M
3300025898\|Ga0207692_10034795	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2441	Open in IMG/M
3300025898\|Ga0207692_10323478	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → unclassified Tenacibaculum → Tenacibaculum sp. M341	944	Open in IMG/M
3300025915\|Ga0207693_10633944	Not Available	831	Open in IMG/M
3300025915\|Ga0207693_10960518	Not Available	654	Open in IMG/M
3300025929\|Ga0207664_11409218	Not Available	618	Open in IMG/M
3300025930\|Ga0207701_10210900	Not Available	1704	Open in IMG/M
3300025939\|Ga0207665_10557188	Not Available	891	Open in IMG/M
3300025960\|Ga0207651_11956641	Not Available	527	Open in IMG/M
3300026310\|Ga0209239_1064281	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1618	Open in IMG/M
3300026314\|Ga0209268_1019910	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2474	Open in IMG/M
3300026327\|Ga0209266_1110732	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1183	Open in IMG/M
3300026335\|Ga0209804_1128181	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1148	Open in IMG/M
3300026523\|Ga0209808_1028714	All Organisms → cellular organisms → Bacteria	2695	Open in IMG/M
3300026530\|Ga0209807_1089740	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1346	Open in IMG/M
3300026550\|Ga0209474_10005689	All Organisms → cellular organisms → Bacteria	10579	Open in IMG/M
3300031057\|Ga0170834_104737672	Not Available	532	Open in IMG/M
3300031754\|Ga0307475_10370800	Not Available	1150	Open in IMG/M
3300032180\|Ga0307471_101413582	Not Available	856	Open in IMG/M
3300032180\|Ga0307471_102256708	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	686	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.14%
Host-Associated	Host-Associated	6.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.14%
Plants	Host-Associated → Plants	6.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.98%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.63%
Loam	Environmental → Terrestrial → Soil → Loam	24.51%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.98%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	44.12%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	20.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	30.39%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	17.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	12.75%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_17685571	3300000033	Soil	LETERFSKDAIWESMKADEILSRSSQVEKIDSVARRTFGLDTPVLGSGAVNLHVLSRGRA
F14TC_1009057901	3300000559	Soil	MRTAKFSEKVAGHLESLDADEILLRSAQVEKIDSVARRTLRLNIPASGSGAVNLNVLCGGRAVVQVNQKNE*
JGI1027J12803_1006977742	3300000955	Soil	MQQRGERYRERMADVSEKVVGHIASMDADSILTRGVQVEKIDTVARRTFGLDNPTAGSGALNLNVRTGGRAIVQINKKNE*
JGI1027J12803_1010020821	3300000955	Soil	VPITVPGRVKKERGERYRQCIAGVSEKVAGHLESMEANEILSRSSQVEKIDTVARRNFGLDSPTAGS
JGI1027J12803_1063117931	3300000955	Soil	SFCSLMRTAKFSDKVAGHLESMNADEILSRSSQVEKIDTVARRTFGLDSPASGSGAVNLNVLCGGRAVVQVNQQKEQQIGFRPV*
JGI1027J12803_1093257361	3300000955	Soil	SPVQQSAAVVMQQRRERYRERMADVSEKVAGHLESMGGDEILSRSSQVERIDTVARRTFGLDNAEKGTGALNLAVLSGGRAIVQVAPRSSE*
Ga0058689_101340571	3300004016	Agave	MQSIAAVMQERYRECVAGVSERIIGHVEGMDADEILTRSGQLEKVDTVARRTFRLDNAEKSTGALNLKVLSGGRALVQIAGRTN*
Ga0062593_1014726181	3300004114	Soil	MQERGEHYRERTAELSEKVAGRLESMDADEILLRSAQVEKIDNVARRTFGLDSPASGSGALNLNVLCGGRAVVQVAPRPSQ*
Ga0062590_1004976322	3300004157	Soil	GAGISERVIGHVESMEADEIVSRSSQVEKIDNVARRTFGLDSPTSGSGVVNLAVLAGGRGVVQVNQKSD*
Ga0062591_1025821261	3300004643	Soil	MQQRGERYRERMADVSEKVVGRIASMDADSILTRGVQVEKIDTVARRTFGLDNPTAGSGALNLNVRTGGRAIVQINKKNE*
Ga0066677_100168682	3300005171	Soil	MRPAKFSEKVAGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGHAIAQVNQKNE*
Ga0066677_102045101	3300005171	Soil	MQERGERHRERVAGISEKVIGHVESMEADEILLRSAQVEKIDTVARRTFGLDNPVSGSGALNLNVLCGGRAIVQVNQKNE*
Ga0066683_102095691	3300005172	Soil	MRTAKFSEKVAGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGRAIVQVN
Ga0066673_102561762	3300005175	Soil	MADVSEKVAGHLESMAADEILLRSSQVEKIDTVARRTFGLDNPISGGGAVNLNVLTGGRAIVQVNQKNE*
Ga0066690_102280932	3300005177	Soil	MRRAKFSEKVAGHLESLDADEILLRSAQVEKIDRVARRTFGLDKPHRAGSGAVNLNVLTGGRVIVQINQKNE*
Ga0066688_102736172	3300005178	Soil	MRTAKFSEKVAGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGHAIAQVNQKNE*
Ga0066684_100788303	3300005179	Soil	MQERGERHRERVAGISEKVIGHVESMEADEILLRSAQVEKIDTVARRTFGLDNPVSGSGALNLNVLCGGRAIVQLNQKS*
Ga0066684_105070282	3300005179	Soil	MRTAKFSEKVAGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGG
Ga0066685_107544602	3300005180	Soil	IVIFPLGERGERYRERMADVSEKVAGHLECMDADEILLRSAQVEKIDTVAHRTFGLDSPAAGSGTLNLNVLTGGRAIVQVNQKNE*
Ga0066675_107118952	3300005187	Soil	AITPLQSIAAVMQERGERYRERMAGVSEKVVSHIALMDADSILTRGAQVEKIDTIARRTFGLDSPTVGSGAVNLNVLTGGRAIVQVNQKNE*
Ga0066675_113097571	3300005187	Soil	KTVAERYRQRMADVSEKVAGHLESLEADEILSRSSQVEKIDTVARRTFQLDNPAAGSGALNLNVLTDGRAIVQINQKNE*
Ga0065705_111395072	3300005294	Switchgrass Rhizosphere	AATMQARGERYRERVAGVSERVVDHLESMEADEILSRSSQVEKIDTVARRTFGLDIPAAGSGAVNLHVLSGGRAVVQIATKAQS*
Ga0070671_1004235272	3300005355	Switchgrass Rhizosphere	MTPIIRMADVSEKVVSHLDSLGADEILLRSSQVGKIDNVARRTFGLDISTPDSGAVNLNVLAGGRAVVQMNQKNG*
Ga0070709_110234101	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPDVSEKVAGHLESLETDEVLSRSSQVEKINTVARRTFGLDMPASGSGSVNLNVLTGGRAIVQINQKKE*
Ga0070714_1002331472	3300005435	Agricultural Soil	YRERMADVSEKVADHIASMNADSILTRSAQVEKIDTVARRTFGLDHPTTGNGAVNLHVLAGGRALVQVNQKNE*
Ga0070714_1007178692	3300005435	Agricultural Soil	MQQRGERYRERMADVSEEVVGHIALMDADSILTRGVQVEKIDTVARRTFGLDNPTAGSGALNLNVRTGGRAIVQINKKNE*
Ga0070713_1002383752	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTPIIRMADVSEKVVSHLDSLGADEILLRSSQVGKIDNVARRTFGLDISTPDSGAVNLNVLAGGRAVVQMNQKNE*
Ga0070713_1004099613	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LKVAGHLESLEADEILSRSSQVEKIDTVARRTFGLDNPVAGSGAVNLHVLSGGRAVVQVNQKNQ*
Ga0070710_106712472	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MEQCGQRYHERMADISAKVVSHIASIYADSILSRSSQVEKIDTVARRLFGLDSSASGSGTLNLNVLTGGRAIVQ
Ga0070711_1002094092	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MADVSEKVADHIASMNADSILTRSAQVEKIDTVARRTFGLDHPTTGNGAVNLHVLAGGRALVQVNQKNE*
Ga0070711_1017005762	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTPIIRMADVSEKVAGHLDSMEADEILSRSSQVEKIDTVARRTFQLDNPISASGAVNLNVLAGGRAVVQVNQKNE*
Ga0066689_100123843	3300005447	Soil	MRTAKFSEKVAGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGRAIVQVNQKNE*
Ga0066682_102507222	3300005450	Soil	MADVSEKVADHLVWMRSGEILSRSVQVEKIEVVRRTFGSDSPPGSGAVNLNVLSGGRAVV
Ga0066681_105280791	3300005451	Soil	MRVQERGERYRERVAGVSEKVVDHWESMEADEILSRSSQVEKIDTVARRTFGLDDTASGNGAVNLNVLWGGRAIVQVNQKNE*
Ga0070697_1007675731	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MQSIAAVMQERGQRYRERIAGVSEKVAGHLESLEADEILLRSSQVEKIDTVARRTFGLDSPTAGSGALNLHVLSGGRAIVQVNQKNE*
Ga0066695_100050395	3300005553	Soil	MRTAKFSEKVAGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGRAIAQVNQKNE*
Ga0066703_104730151	3300005568	Soil	MRRAKFSEKVAGHLESLDADEILLRSAQVEKIDRVVRRTFGLDKPHRAGSGAVNLNVLTGGRVIVQINQKNE*
Ga0066708_101054004	3300005576	Soil	MRTAKFSEKVAGHLESLDADEILLRSAQVEKIDRVARRTFGLDKPHRAGSGAVNLNVLTGGRVIVQINQKNE*
Ga0066708_105530521	3300005576	Soil	NGEPLPSVWKLYSMEEIERGERYRERMADVSEKVAGHLESMEANEILSRSSQVEKIHTVARRTFGLDNPVAGSGALNLNVLSGGRAVVQVNQTNE*
Ga0070717_104303691	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MAAERMADVSEKVAGHLESMEADEILSRSSQVEKIDTVARRTFGLDNPAAGSGALNLNVLCGGRAVVQVNQKNE*
Ga0070717_106857632	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MPDVSEKVAGHLESLQTDEILSRSSQVEKIDTVARRTFGLDMPASGSGSVNLNVLTGGRAIVQINQKKK*
Ga0066652_1011376073	3300006046	Soil	MRAIERMADVSEKVAGHLESMEADEILSRSSQVEKIDSVARRTFGLDVPAAGRRLTGRCGRSGWWNVLTGGRAIVQVPPPPL
Ga0066652_1014587301	3300006046	Soil	HLESLEADEILSRSSQVEKVDTVARRTFGLDIPASSSGAVNLNVFTGGRAVVQINQKKE*
Ga0070716_1010389581	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MPPFFGPARTPAQSAAGVMQERGERYRERMADVSEKVAGHLESMEADEILSRSSQVEKIDTVARRTFGLDNPAAGSGALNLNVLCGGRAVVQVNQKNE*
Ga0070712_1000764794	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MQQRGERYRERVAGISERVIGHVESMEADEILLRSAQVEKIDNVARRTFGLDSPQAGSGAVNLNVLCGGCAVVQVNQKNE*
Ga0070712_1008571021	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MADVSEKVAGHLESMEADEILSRSSQVEKIDTVARRTFGLDSPVAGSGAVNLNVLTGGRAVVQVNQKNG*
Ga0070712_1009733692	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MQERGERYRERVAGVSERVVDHLESMEADEILSRSSQVEKIDTVARRTFGLDIPAAGSGAVNLHVLSGGRAVVQVNQRNE*
Ga0066659_102241053	3300006797	Soil	MRTAKFSEKVAGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGRAIVQVNQK
Ga0066659_102729161	3300006797	Soil	MQERGERHRERVAGISEKVIGHVESMEADEILLRSAQVEKIDTVARRTFGLDNPVSGSGALNLNVLCGGR
Ga0066659_106851681	3300006797	Soil	SSGLGAEFCSLMRRAKFSEKVAGHLESLDADEILLRSAQVEKIDRVVRRTFGLDKPHRAGSGAVNLNVLTGGRVIVQINQKNE*
Ga0066710_1010546422	3300009012	Grasslands Soil	LVPRPVAPKQRIVIFPLGERGERYRERMADVSEKVAGHLECMDADEILLRSAQVEKIDTVAHRTFGLDSPAAGSGALNLNVLTGGRAIVQINQKNE
Ga0066710_1020186902	3300009012	Grasslands Soil	MRRAKFSEKVAGHLESLDADEILLRSAQVEKIDRVVRRTFGLDKPHRAGSGAVNLNVLTGGRAIVQVNQKNE
Ga0066709_1041078181	3300009137	Grasslands Soil	MRTAKFSEKVAGHLESLDADEILLRSAQVEKIDRVARRTFGLDKPHRAGSSAVNLNVLTGGRVIVQINQKNE*
Ga0134109_102749021	3300010320	Grasslands Soil	MRTAKFSEKVSGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGRAIVQVNQKNE*
Ga0134128_126633872	3300010373	Terrestrial Soil	MAGVSERVVDHLESMEAEEILSRSSQVEKIDTVARRTFGLDNPASGSGAVDPNVLCGGRTIVQVAPRPSK*
Ga0134126_122489421	3300010396	Terrestrial Soil	MPDVSEKVAGHLESLQTDEILSRSSQVEKIDTVARRTFGLDMPASGSGSVNLNVLTGGRAIVQINQKKE*
Ga0137364_107858091	3300012198	Vadose Zone Soil	MADVSEKLVGRLESMEADEILSRSSQVEKIDTVARRTFGLDNPVAGSGALNLNVLTGGRAVVQIATKTRS*
Ga0137365_112170311	3300012201	Vadose Zone Soil	MNRERMAGVSEKVAGHLESMDADSILTRGAQVEKIDTVERRTFGLDSPTAGSGMLNLIVLTGGRAIVQVNQKNE*
Ga0137376_104224862	3300012208	Vadose Zone Soil	MEEIERGERYRERVAGVSERVVDHLESMAADEILLRSSQVEKIDTVARRTFGLDNPISGSGAVNLNVLTGGRAIVQVNQKNE*
Ga0137377_105649823	3300012211	Vadose Zone Soil	MRRAKFSEKVAGHLESLDADEILLRSAQVEKIDRVARRTFGLDKPHRAGSGAVNLNVLTG
Ga0137371_108629761	3300012356	Vadose Zone Soil	MKWQKRCFVDHLESLEEDEILTRSSQVEKIDTVARRTFGLDIPASSSGAVNLNVLTGGRAVVQINQKKE*
Ga0137394_102204542	3300012922	Vadose Zone Soil	MAGTSERVVDHLETMDPDEILIRSSPVEKIDIVARRTFALDTPVAGSGAVNLSVLTGGRAIVQINQKNE*
Ga0134087_100913371	3300012977	Grasslands Soil	MRTAKFSEKVAGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGHAIAQVN*
Ga0134087_103845252	3300012977	Grasslands Soil	MRRAKFSEKVAGHLESLDADEILLRSAQVEKIDRVVRRTFGLDKPHRAGSGAVNLNVLTGGHVIVQINQKNE*
Ga0157374_126336071	3300013296	Miscanthus Rhizosphere	MQERGERYRERMADVSEKVAGHLESMEADEILSQSSQVEKIDTVARRTFQLDNPAAGSGALNLNVLCGGRAVVQVNQKNE*
Ga0157378_105149772	3300013297	Miscanthus Rhizosphere	MTPIIRMADVSEKVVSHLDSLGAEEILLRSSQVGKIDNVARRTFGLDISTPDSGAVNLNVLAGGRAVVQMNQKNE*
Ga0134078_100368733	3300014157	Grasslands Soil	MRTAKFSEKVAGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGRAIVQLNQKS*
Ga0134073_100765402	3300015356	Grasslands Soil	ERGQRYRERMAGVSDRVAGHLESLEADEILLHSSQVEKIDSVARRTFGLDTPAAGSGAVNLNVLSGGRTAVQINQKNE*
Ga0134073_102723782	3300015356	Grasslands Soil	MQERGERHRERVAGISEKVIGHVESMEADEILLRSSQVEKIDTVARRTFGLDNPVSGSGALNLNVLCGGRAIVQLNQKS*
Ga0132258_129806724	3300015371	Arabidopsis Rhizosphere	MRTAKFSEKVAGHLESLDADEILLRSAQVEKIDSVARRTFGLDIPASGSGAVNLNVLCGGRTKQQ*
Ga0132256_1001315353	3300015372	Arabidopsis Rhizosphere	MRTAKFSEKVAGHLESLDANEILLRSAQVEKIDSVARRTFGLDIPASGSAAVNLNVLCGGRTKQQ*
Ga0066655_100029287	3300018431	Grasslands Soil	MRTAKFSEKVAGHLESLDADKILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGHAIAQVNQKNE
Ga0066667_100079716	3300018433	Grasslands Soil	MRTAKFSEKVAGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGRAIVQVNQKNE
Ga0066667_100144871	3300018433	Grasslands Soil	IATVMQERGQRYRERMAGVSDRVAGHLESLEADEILLHSSQVEKIDSVARRTFGLDTPAAGSGAVNLNVLSGGRTAVQINQKNE
Ga0066667_122148511	3300018433	Grasslands Soil	MQERGERHRERVAGISEKVIGHVESMEADEILLRSAQVEKIDTVARRTFGLDNPVSGSGALNLNVLCGGRAIVQLNQKS
Ga0066662_107168432	3300018468	Grasslands Soil	MRTAKFSEKVAGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGRAIAQVNQKNE
Ga0066662_113496182	3300018468	Grasslands Soil	VAERYRQRMADVSEKVAGHLESLEAGEILSRSSQVEKIDTVARRTFQLDNPAAGSGALNLNVLTDGRAIVQINQKNE
Ga0066669_100083407	3300018482	Grasslands Soil	MRTAKFSEKVAGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGHAIAQVNQKNE
Ga0066669_102802452	3300018482	Grasslands Soil	MADVSEKVADHLESLEADEVLSRSSQVEKIDTVARRTFGLDSPVEGSGAVNLNVLSGGRAVVQVNQKNE
Ga0066669_123622181	3300018482	Grasslands Soil	MSEKVAGHLESLEADEILSRSSQVEKIDTVARRTFGLDIPASSSGAVNLNVLTGGRAVVQINQKKE
Ga0193719_100410022	3300021344	Soil	MADVSEKVAGHLESMDADDILVRSSQVERIDTVARRTFGLDSPATGSGAVNLNVLAGGRAIVQVNQKNE
Ga0193719_103517461	3300021344	Soil	MADVSEKVVDHLETMDADDILLRSSQVERIDTVARRTFGLDNPTAGSGAVNLNVLTGGRAVVQIKSKERITILYLDAIGRED
Ga0193750_10006684	3300021413	Soil	MADVSEKVAGHLESMEADEILSRSSQVEKIDTVARRTFQLDNPAAGSGALNLNVLTGGRAIVQINQKNE
Ga0207692_100347951	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	PQNGADSHGARMQERGERYRERVAGVSERVVDHLESMEADEILSRSSQVEKIDTVARRTFGLDIPAAGSGAVNLHVLSGGRAVVQVNQRNE
Ga0207692_103234782	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MADVSEKVAGHLESLEADEILSRSSQVEKIDTVARRTFGLDSPASGSGAVNLNVLSGGRA
Ga0207693_106339443	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MADVSEKVAGHLESMEADEILSRSSQVEKIDTVARRTFGLDIPAGGNGVVNLNVLTGGRAIVQISQKNE
Ga0207693_109605181	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	HLESMEADEILSRSSQVEKMETVARRTFGLDNPAAGSGAVNLNVLCGGRAIVQVNQKNE
Ga0207664_114092181	3300025929	Agricultural Soil	MQQRGERYRERMADVSEEVVGHIALMDADSILTRGVQVEKIDTVARRNFGLDNPTAGSGALNLNVRTGGRAIVQINKKNE
Ga0207701_102109001	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MAGVSEKVVSHIGSMDADSILKRSSEVERIDNVARRTVGLDNPTAGRGAINLNVLTGGRAVVQINQKNE
Ga0207665_105571882	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MPDVSEKVAGHLESMEADEILSRSSQVEKIDTVARRTFGLDNPAAGSGALNLNVLCGGRAVVQVNQKNE
Ga0207651_119566411	3300025960	Switchgrass Rhizosphere	MPDVSEKVAGHLESLQTDEILSRSSQVEKIDTVARRTFGLDMPASGSGSVNLNVLTGGRAIVQINQKKE
Ga0209239_10642813	3300026310	Grasslands Soil	MRRAKFSEKVAGHLESLDADEILLRSAQVEKIDRVVRRTFGLDKPHRAGSSAVNLNVLTGGRVIVQINQKNE
Ga0209268_10199101	3300026314	Soil	MRTAKFSEKVAGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGRAI
Ga0209266_11107322	3300026327	Soil	MRTAKFSEKVAGHLESLDADEILTRSAQLEKIDTVARRTFGLDDTASGNRAVNLNVLCGGRA
Ga0209804_11281812	3300026335	Soil	MRRAKFSEKVAGHLESLDADEILLRSAQVEKIDRVARRTFGLDKPHRAGSGAVNLNVLTGGRVIVQINQKNK
Ga0209808_10287142	3300026523	Soil	MRVQERGERYRERVAGVSEKVVDHWESMEADEILSRSSQVEKIDTVARRTFGLDDTASGNGAVNLNVLWGGRAIVQVNQKNE
Ga0209807_10897401	3300026530	Soil	MQERGERHRERVAGISEKVIGHVESMEADEILLRSAQVEKIDTVARRTFGLDDPVSGSGALNLNVLCGGRAIVQLNQKS
Ga0209474_100056893	3300026550	Soil	MQERGERHRERVAGISEKVIGHVESMEADEILLRSAQVEKIDTVARRTFGLDNPVSGSGALNLNVLCGGRAIVQLNHKSQ
Ga0170834_1047376721	3300031057	Forest Soil	LHDEVMIERGERYRERMADVSEKVAGHLESLEADEILSRSSHVEKIDTVARRTFGLDNPAAGSAALNLNVLSGGRALVQVNQKNE
Ga0307475_103708001	3300031754	Hardwood Forest Soil	MCVERPSAKSAKRYRERMAEVSEKVAGHSESMEADEILSRSSQVEKIDTVARRTFGLDSPAAGSGALNLNVLTGGRAIVQINQKNE
Ga0307471_1014135821	3300032180	Hardwood Forest Soil	MQQRGERYRERMADVSEKVVGRIASMDADSILTRSAQVEKIDTVARRTFGLDSPAGSGALNLNVLAGGRAIVQVNQKNE
Ga0307471_1022567082	3300032180	Hardwood Forest Soil	MADVSEKVAGHLESLEADEILLRSAQLEKNDTVARRTFGLDNPVTGSRALNLHVLTGGRTVVQINQKNE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101720

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences