Metagenome / Metatranscriptome Family F101772

Basic Information
Family ID	F101772
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	45 residues
Representative Sequence	MLEVDTFHGHVKASELKIGPENMPSSTEGRGLIRDKNGDLVFA
Number of Associated Samples	96
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	6.86 %
% of genes from short scaffolds (< 2000 bps)	6.86 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Most Common Taxonomy
Group	Unclassified (95.098 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (8.823 % of family members)
Environment Ontology (ENVO)	Unclassified (29.412 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.137 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.23% β-sheet: 18.31% Coil/Unstructured: 77.46%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF07995	GSDH	18.63
PF03631	Virul_fac_BrkB	8.82
PF07883	Cupin_2	3.92
PF03972	MmgE_PrpD	2.94
PF04909	Amidohydro_2	2.94
PF01370	Epimerase	2.94
PF09084	NMT1	1.96
PF01904	DUF72	1.96
PF02371	Transposase_20	1.96
PF13340	DUF4096	0.98
PF07690	MFS_1	0.98
PF00472	RF-1	0.98
PF07969	Amidohydro_3	0.98
PF00701	DHDPS	0.98
PF04542	Sigma70_r2	0.98
PF00561	Abhydrolase_1	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	18.63
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	8.82
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	2.94
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.96
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.96
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	1.96
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.96
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.96
COG0216	Protein chain release factor RF1	Translation, ribosomal structure and biogenesis [J]	0.98
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.98
COG1186	Protein chain release factor PrfB	Translation, ribosomal structure and biogenesis [J]	0.98
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.98
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.98
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.98

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
All Organisms	root	All Organisms	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
cellular organisms	root	All Organisms → cellular organisms	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.94 %

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_5952744	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1007	Open in IMG/M
3300012200\|Ga0137382_10763796	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300012210\|Ga0137378_11013557	Not Available	744	Open in IMG/M
3300014871\|Ga0180095_1068756	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	648	Open in IMG/M
3300021081\|Ga0210379_10424590	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	588	Open in IMG/M
3300025537\|Ga0210061_1052576	All Organisms → cellular organisms → Bacteria → Proteobacteria	692	Open in IMG/M
3300025905\|Ga0207685_10534930	Not Available	621	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.41%
Host-Associated	Host-Associated	20.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.73%
Plants	Host-Associated → Plants	20.59%
Aquatic	Environmental → Aquatic	15.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.84%
Freshwater	Environmental → Aquatic → Freshwater	6.86%
Sediment	Environmental → Aquatic → Sediment	5.88%
Marine	Environmental → Aquatic → Marine	1.96%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.98%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.98%
Floodplain	Environmental → Terrestrial → Floodplain	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.18%
Loam	Environmental → Terrestrial → Soil → Loam	13.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.90%
Sand	Environmental → Terrestrial → Soil → Sand	3.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.98%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.98%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.98%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.92%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.94%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.94%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.96%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.96%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.98%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.98%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.98%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.98%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.98%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300002099	Soil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009171	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011400	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT133_2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012486	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.120510	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014871	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_1Da	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300025537	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027209	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0208.00005690	2162886013	Switchgrass Rhizosphere	KDPKGVLRKDNGMLEVDTFHGHINVDELKIGPENMPSSMNGRGLIRDENGNLVFA
INPhiseqgaiiFebDRAFT_1011920052	3300000364	Soil	TFHGHVKVSELKIGPENMPASTEGRGLIRDKNGKLVFV*
F14TC_1015401302	3300000559	Soil	FHGHVKVNELKIGPENMPSSRDGQGLIRDKEGKLVFGEPS*
AF_2010_repII_A001DRAFT_100988291	3300000793	Forest Soil	PKEMLEVDTFHGHIKVKDLKIRSENMPSSTEGRGLIRDKNGNLVFA*
AP72_2010_repI_A100DRAFT_10029241	3300000837	Forest Soil	PKGVDRRPKEMLEVDTFHGHVKVKDLKICSENMPSSTQGGGLIRDKNGNLVFA*
JGI24808J26613_10567681	3300002099	Soil	DRRQKGMLEVDTFHGHVKVSELKIGPENMPSSMDGKGLIRDRNGNLVFA*
Ga0055465_103039952	3300004013	Natural And Restored Wetlands	VFRQDKEMLEVDTYHGHVKVGDLKIGPENMPSSMGGRGLIRDHDGNLVFA*
Ga0066395_100899161	3300004633	Tropical Forest Soil	DRRPKEMLEVDTFHGHVKVKDFKISSENMPSSTEGRGLIRDKNGNLVFA*
Ga0065705_100715002	3300005294	Switchgrass Rhizosphere	DTFHGHVKLSELKIGPENMPSSTEGRGLIRDKSGNLVFA*
Ga0065707_105647522	3300005295	Switchgrass Rhizosphere	DTFHGHVRISELKIGPENMTASTEGRGLIRDQDGKLVFA*
Ga0070677_101524932	3300005333	Miscanthus Rhizosphere	KGVSRQENGMLEVDTFHGHVKLSELKIGPENMPSSTEGRGLIRDKSGNLVFA*
Ga0068869_1011684502	3300005334	Miscanthus Rhizosphere	KGVAREANGMLEVDTFHGHIKVSELKISPENMPSSTDGRGLIRDKNGELVFA*
Ga0070682_1017867922	3300005337	Corn Rhizosphere	GVVRQENGMLEVDTFHGHVRASELKVGPENMPSSTEGRGLIRDKHGNLVFA*
Ga0070689_1005564301	3300005340	Switchgrass Rhizosphere	PKGVAREANGMLEVDTFHGHIKVSELKISPENMPSSTDGRGLIRDKNGELVFA*
Ga0070703_104011452	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	REANGMLEVDTFHGHVKVSELKISPENMPSSTDGRGLIRDKNGALVFA*
Ga0070709_113438691	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VSRQENGMLEVDTFHGHVKLSELKIGPENMPSSTEGRGLIRDKSGNLVFA*
Ga0070684_1005450602	3300005535	Corn Rhizosphere	EVDTFHGHVKLSELKIGPENMPSSTEGRGLIRDKSGNLVFA*
Ga0070664_1004803892	3300005564	Corn Rhizosphere	QENGMLEVDTFHGHVKLSELKIGPENMPSSTEGRGLIRDNSGNLVFA*
Ga0068857_1024647641	3300005577	Corn Rhizosphere	QENGMLEVDTFHGHVRASELKIGPENMPSSSEGRGLIRDKHGNLVFA*
Ga0068859_1009301782	3300005617	Switchgrass Rhizosphere	TFHGHVKLSELKIGPENMPSSTEGRGLIRDKSGNLVFA*
Ga0066903_1015621681	3300005764	Tropical Forest Soil	TFHGHVKVKDLKISSENMPSSTEGRGLIRDKNGNLVFA*
Ga0066903_1027444592	3300005764	Tropical Forest Soil	EADTFKGLVTVDELKVGPENMPSSRDGRGLLRDATGKLLFA*
Ga0074470_118195113	3300005836	Sediment (Intertidal)	GHIPVNELKIGPDNMPSSRDGAGLIRDKNGDLVFT*
Ga0070716_1000819913	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	EMLEVDTFHGHIKVKDLRISSENMPASTEGKGLIRDKNGNLVFA*
Ga0079220_113661621	3300006806	Agricultural Soil	VDRVPKEMLEVDTFHGHIKASELRIGPENLPSSTNGRGLIRDRNGKLVFA*
Ga0075430_1011308382	3300006846	Populus Rhizosphere	DTFHGHVKVSELKIGPENMPSSTDGKGLIRDRNGNLVFA*
Ga0075433_107109991	3300006852	Populus Rhizosphere	RQENGMLEVDTFHGHVKLSELKIGPENMPSSTEGRGLIRDKSGNLVFA*
Ga0075436_1008754552	3300006914	Populus Rhizosphere	MLEVDTFHGHVRASELKIGPENMPSSTEGRGLIRDKHGNLVFA*
Ga0079303_102326603	3300006930	Deep Subsurface	RPMLEVDTFHGHVHVNELKIGPDNMPSSRNGGGLIRDKDGKLVFA*
Ga0066710_1040140662	3300009012	Grasslands Soil	DTFHGHVKVSELKIGPENMSSSTEGRGLIRDQKGNLVFA
Ga0105106_102947051	3300009078	Freshwater Sediment	ANGMLEVDTFHGHVRVSDLKIGPENMPSSTEGRGLIRDKNGDLVFA*
Ga0066709_1044136572	3300009137	Grasslands Soil	VDRRQNGMLEVDTFHGHVKVNELKIGPENMLSSTEGRGLIRDQNGNLVFA*
Ga0114129_131012511	3300009147	Populus Rhizosphere	MLEVDTFHGHVTLDELKIGPENMPSSRDGGGLIRDKHGKLVFA*
Ga0111538_123858311	3300009156	Populus Rhizosphere	VDTFHGHVKANDLKIGPENMPSSINGGGLIRDKNGNLVFA*
Ga0105092_100536093	3300009157	Freshwater Sediment	EVDTFHGHVKVSELRIGPENMPASTEGRGLIRDQNGKLVFGG*
Ga0075423_108851183	3300009162	Populus Rhizosphere	AMVEVDTFHGHVNVSDLKIGPQNMPSSRDGRGLIRDKDGRLIFT*
Ga0075423_127466501	3300009162	Populus Rhizosphere	MLEVDTFHGHVRASELKIGPENMPSSSEGRGLIRDKHGNLVFA*
Ga0105101_105496971	3300009171	Freshwater Sediment	VDTFHGHVHVNELKIGPENMPSSRGGAGLIRDNDGKLVFA*
Ga0114945_107569822	3300009444	Thermal Springs	VDTFHGHIKASELEIGPKNLPSSRDGGGFIRDKEGKLVFE*
Ga0126307_105577803	3300009789	Serpentine Soil	FHGHVHVDELKIGVDNMPSSRNGAGLIRDSAGRLVFR*
Ga0126374_100081485	3300009792	Tropical Forest Soil	DTFHGHVKVKDLKISSENMPSSTEGRGLIRDKNGNLVFA*
Ga0105061_10037741	3300009807	Groundwater Sand	DRRQKGMLEVDTFHGHIKVSELKIGPENMPLSTEGRGLIRDQNGKLVFGG*
Ga0105076_11020321	3300009816	Groundwater Sand	HVKVSELKIGPENMPASTAGRGLIRDQNGKLVFA*
Ga0126384_106069522	3300010046	Tropical Forest Soil	DRRQNGMLEVDTFHGHVKVSELKIGPENMPSSGGGGGLIRDQNGKLVFG*
Ga0126382_121631871	3300010047	Tropical Forest Soil	PKGVVRRQNGMLEVDTFHGHVKVGELKIGPENMPSSAGGGGLIRDQNGKLVFG*
Ga0127503_103196902	3300010154	Soil	DTFHGHVKVSELKIGPENMPSSMDGRGLIRDQNGNLVFT*
Ga0134071_105596702	3300010336	Grasslands Soil	VDRKQNGMLEVDTFHGHVKVNELKIGPENMPSSRDGQGLIRDKQGKLVFGE
Ga0134062_102392551	3300010337	Grasslands Soil	MLEVDTFHGHVRLNELKIGSENMPASTEGRGLIRDQNGNLVFASG*
Ga0126377_120579032	3300010362	Tropical Forest Soil	QNGMLEVDTFHGHVKVSELKIGPENMPSSAGGGGLIRNQDGKLVFG*
Ga0126381_1050754831	3300010376	Tropical Forest Soil	EPDTFKGLVTVDELKVGPDNMPSSRDGRGLLRDASGKLLFA*
Ga0137312_10775981	3300011400	Soil	GAERQAKAMVEVDTFHGHVKVNELKIGPQNMPSSRDGRGLIRDKDGRLVFA*
Ga0137382_107637961	3300012200	Vadose Zone Soil	KDPKGVDRRQKGMLEVDTFHGHVKVSELKIGPENMSSSTEGRGLIRDQKGNLVFA*
Ga0137378_110135571	3300012210	Vadose Zone Soil	PKGVERKQNGMLEVDTFHGHVKVNELKIGPENMPSSRDGQGLIRDKEGKLVFGEPS*
Ga0137369_107234181	3300012355	Vadose Zone Soil	RKQNGMLEVDTFHGHVKVNELKIGPENMPSSRDGQGLIRDKQGNLVFGAPS*
Ga0137385_113597791	3300012359	Vadose Zone Soil	DTFHGHVKINELKIGPKNMLSSTEGRGLIRDQNGNLVFA*
Ga0137375_102258681	3300012360	Vadose Zone Soil	GMLEVDTFHGHVKAHELKIGPENMASSRDGQGLIRDKEGRLVFA*
Ga0157331_10105802	3300012486	Soil	VRQENGMLEVDTFHGHVRASELKVGPENMPSSSEGRGLIRDKHGNLVFA*
Ga0153915_107338631	3300012931	Freshwater Wetlands	VDTFHGHVKFSELKIGPENMPPSTDGRGLIRDQNGELVFA*
Ga0137410_114785121	3300012944	Vadose Zone Soil	MLEVDTFHGHVKASELKIGPENMPSSTDGVGLIRDQKGNLVFA*
Ga0164303_105354351	3300012957	Soil	IDRRQNGMLEVDTFHGHVKVSELKIGPENMPASTEGRGLIRDKNGKLVFA*
Ga0134081_100158651	3300014150	Grasslands Soil	PKGVDRQQKGMLEVDTFHGHVRLNELKIGPENMPASTEGRGLIRDQNGNLVFAS*
Ga0157380_130755191	3300014326	Switchgrass Rhizosphere	ANGMLEVDTFHGHVKVSELRISPENMPSSTDGRGLIRDKNGELVFA*
Ga0180095_10687562	3300014871	Soil	HREARAMLEVDTFHGHLHVNDLKIGPENLPTSRHGAGLIRDQDGKLVFA*
Ga0132256_1014381561	3300015372	Arabidopsis Rhizosphere	KGVVRQENGMLEVDTFHGHIKASELKIGPENMPSSTEGRGLIRDKRGNLVFA*
Ga0132256_1023179352	3300015372	Arabidopsis Rhizosphere	GMLEVDTFHGHVRASELKIGPENMPSSSEGRGLIRDKHGNLVFA*
Ga0132255_1016089871	3300015374	Arabidopsis Rhizosphere	VDTFHGHVKASELKIGPENMPSSTDGRGLIRDKNGDLVFA*
Ga0132255_1052623202	3300015374	Arabidopsis Rhizosphere	EVDTFHGHIRASELKIGPENMPSSTEGRGLIRDKHGNLVFA*
Ga0182041_108805452	3300016294	Soil	EIDTYKGFAKLSELKIGPENMPDSRDGRGLIRDREGKLVFA
Ga0184634_104568711	3300018031	Groundwater Sediment	KGAFRQVKEMLEVDTYHGHVKVSELKIGPENMPSSTGGRGLIRDKEGNLVFA
Ga0184637_102724633	3300018063	Groundwater Sediment	TFHGHVKISELKIAPENMPSSTDGGGLIRDKDGNLVFA
Ga0184629_101027111	3300018084	Groundwater Sediment	MLEVDTFHGHLHVNDLKIGPENLPTSRHGAGLIRDQDGKLVFA
Ga0190265_110655041	3300018422	Soil	TFHGHVKASEIRIGPENMPSSAGGRGLIRDKDGALVFA
Ga0190265_133578491	3300018422	Soil	GHVRIDELKIGPENMPSSIDGGGLIRDSRGNLVFE
Ga0190265_133654431	3300018422	Soil	GHVKVSELKISAENMPSSTDGRGLIRDKNGELVFA
Ga0193743_10521181	3300019889	Soil	FHGHVKVSELKISPENMPSSTDGRGLIRDKNGELVFA
Ga0193721_10406432	3300020018	Soil	MLEVDTFHGHVKASELKIGPENMPSSTEGRGLIRDKNGDLVFA
Ga0193726_13809932	3300020021	Soil	KGAAREANGMLEVDTFHGHVKVSELKISPENMPSSTDGRGLIRDKNGELVFA
Ga0210379_104245902	3300021081	Groundwater Sediment	PKGVFRQVKEILEVDTYHGHVKVSDLKIGPENMPASTEGRGLIRDNDGNLVFA
Ga0210061_10525762	3300025537	Natural And Restored Wetlands	DPKGVIREDNGMLEVDTFHGHVHINELRIGPENMPSSADGRGLIRDSQGNLVFA
Ga0207685_105349302	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	RDPKGVSRGANGMLEVDTFHGHVKASELKIGPENMPSSTEGRGLIRDKNGDLVFA
Ga0207660_102581782	3300025917	Corn Rhizosphere	LEVDTFHGHVKLSELKIGPENMPSSTEGRGLIRDKSGNLVFA
Ga0207652_100616711	3300025921	Corn Rhizosphere	NGMLEVDTFHGHIRASELKIGPENMPSSIDGGGLIRNKNGELVFG
Ga0207701_100253777	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	GMLEVDTFHGHVKLSELKIGPENMPSSTEGRGLIRDKSGNLVFA
Ga0207651_121366701	3300025960	Switchgrass Rhizosphere	DTFHGHVRASELKIGPENMPSSTEGRGLIRDKHGNLVFA
Ga0207677_120120302	3300026023	Miscanthus Rhizosphere	FHGHVKLSELKIGPENMPSSTEGRGLIRDKSGNLVFA
Ga0207676_115191591	3300026095	Switchgrass Rhizosphere	DTFHGHIKVSELKISPENMPSSTDGRGLIRDKNGELVFA
Ga0209875_10013561	3300027209	Groundwater Sand	VDTFHGHVKVSELKIGPENMPSSTGGRGLIRDQNGKLVFAG
Ga0209982_10178893	3300027552	Arabidopsis Thaliana Rhizosphere	KENGMLEVDTFHGHVRVDELKIGPENMPPSTDGRGLIRDQNGNLVFE
Ga0209465_100249191	3300027874	Tropical Forest Soil	KGVDRRPKEMLEVDTFHGHVKVKDFKISSENMPSSTEGRGLIRDKNGNLVFA
Ga0209705_106101041	3300027979	Freshwater Sediment	VDTFHGHVRVNELKIGPENMPSSRGGAGLIRDKDGKLVFA
Ga0302046_103661602	3300030620	Soil	EVDTFHGHININELKIGPENMPSSADGRGLIRDSQGNLVFA
(restricted) Ga0255312_10884822	3300031248	Sandy Soil	EVDTFHGHIKVDELKIGPENMPSSREGRGLIRDQKGNLVFA
Ga0310915_101828981	3300031573	Soil	QGVIEADTFKGLVTVDELKVGPENMPSSRDGRGLLRDATGKLLFA
Ga0318546_104317171	3300031771	Soil	TFKGLVTVDELKVGPENMPSSRDGRGLLRDATGKLLFA
Ga0307473_111868842	3300031820	Hardwood Forest Soil	GVSRGANGMLEVDTFHGHVKASELKIGPENMPSSTEGRGLIRDKNGDLVFA
Ga0318544_102980762	3300031880	Soil	IEADTFKGLVTVDELKVGPENMPSSRDGRGLLRDATGKLLFA
Ga0310912_109198081	3300031941	Soil	LEVDTFHGHVKVSELKIGPENMPSSTEGRGLIRDKNGNLVFS
Ga0306926_103820903	3300031954	Soil	SGMLEVDTFHGHVNFNELKIGAENMPASTEGRGLIRDKNGKLVFA
Ga0335085_105236791	3300032770	Soil	ERQAREMLEVDTFHGHVRVGELKIGPENMPSSTNGRGLLRDKDGNLVFA
Ga0335077_114724671	3300033158	Soil	PPKAVVTNNQGIVEVDTFKGLIKASEIVLGPENMPSSKDGHGLIRDRNSQLVFA
Ga0316619_111562451	3300033414	Soil	GHVHVNELKIGPDNMPSSRNGAGLIRDKAGKLVFA
Ga0364945_0005100_11_142	3300034115	Sediment	MLEVDTFHGHVKINELKIGPENMPSSTNGRGLIRDQNGNLVFA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101772

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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