Basic Information | |
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Family ID | F101782 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 102 |
Average Sequence Length | 46 residues |
Representative Sequence | RRKSRGARLTLIPVDARVWNAHMPLDAPAIAKTLLARLKSGA |
Number of Associated Samples | 93 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 2.02 % |
% of genes near scaffold ends (potentially truncated) | 95.10 % |
% of genes from short scaffolds (< 2000 bps) | 92.16 % |
Associated GOLD sequencing projects | 84 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.36 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (67.647 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (12.745 % of family members) |
Environment Ontology (ENVO) | Unclassified (41.176 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (50.980 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 22.86% β-sheet: 0.00% Coil/Unstructured: 77.14% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.36 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Sediment Wetland Groundwater Sediment Watersheds Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Serpentine Soil Glacier Forefield Soil Surface Soil Agricultural Soil Arctic Peat Soil Soil Soil Grasslands Soil Soil Forest Soil Hardwood Forest Soil Soil Tropical Peatland Permafrost Soil Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Exposed Rock Sediment Arabidopsis Rhizosphere Miscanthus Rhizosphere Avena Fatua Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Avena Fatua Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
P3_CLC_02805230 | 2124908041 | Soil | LPISGAKVTVIPVDTRVWDAHIPVDAPAVVKNLLARLRGGT |
JGI25383J37093_100850632 | 3300002560 | Grasslands Soil | RAIADQRRKSRGTKATLIPVDARNWDAHLPHDAPASAKTLLARVRTGA* |
JGI20214J51650_106839412 | 3300003541 | Wetland | GDLAGEIADQRKKSRGAKVTLIPVDARVWDAHIPLDAPAIAKTLIARLKSGT* |
Ga0063455_1017013252 | 3300004153 | Soil | IAEQRRRSRGARLTLIPVDARVWDAHMPLDAPPIAKSLLARLKSGG* |
Ga0066395_105312661 | 3300004633 | Tropical Forest Soil | AEITNQRRRSRGARLTIIPVDARVWHAHIPLDAPAIAKTLLTRLKSGS* |
Ga0065715_107659731 | 3300005293 | Miscanthus Rhizosphere | RQRGTRLTLIPVDARNWEAHMPIDAPGIAKTLLARLRTGT* |
Ga0070660_1013558422 | 3300005339 | Corn Rhizosphere | RAGGGKLVLIPVDARDWEARMPLDAPPIAKTLLARLRSGT* |
Ga0070669_1006802342 | 3300005353 | Switchgrass Rhizosphere | DQRRKSRGAKVTVIPVDARVWDARMPLDAPAVAKALLAHLKSGS* |
Ga0070673_1020299272 | 3300005364 | Switchgrass Rhizosphere | RRKSRGARLTLIPVDARVWNAHMPLDAPAIAKTLLARLKSGA* |
Ga0070705_1011525022 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | KHGKAGGGKLVLIPVDARDWDARMPLDAPPIAKTLLAKLKSGT* |
Ga0070700_1004851171 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | PAGELAGEIAGQRRKSRGAKVTLIPVDVSIWHAHMPLDAPEIAKSLIAKLKSGG* |
Ga0070699_1009831312 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | AGGGKLVLIPVDARDWDARMPLDAPPIAKTLLAKLKSGT* |
Ga0073909_107141721 | 3300005526 | Surface Soil | ALVPAGELAGEIADQRRKSRGARVTLIPVDARVWNAHMPLDAPAIAKTLVARLKSGT* |
Ga0070684_1015697192 | 3300005535 | Corn Rhizosphere | SRGAKITLIPVDARIWNAHMPLDAPAIAKTLLARLKSGT* |
Ga0070697_1012154981 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | RKKSRSKVTLIPVDARDWAAHIPTDAPDVAKNLLARLKGGT* |
Ga0068853_1015544441 | 3300005539 | Corn Rhizosphere | RRSRGARLSIIPVDARVWHAHIPLDAPAVAKTLLTRLKSGS* |
Ga0070672_1000892521 | 3300005543 | Miscanthus Rhizosphere | GLTLIPVDARNWEAHMPLDAPAIAKTLLARLRTGA* |
Ga0068858_1015732642 | 3300005842 | Switchgrass Rhizosphere | AELAREITDQRRKSRGAKVTVIPVDARVWDARMPLDAPAVAKTLLARLKSGS* |
Ga0068860_1021439381 | 3300005843 | Switchgrass Rhizosphere | RRRPSRGCKVTLIPVDASVWSAHMPLDAPGVAKDLLTRLRSNV* |
Ga0068862_1013797252 | 3300005844 | Switchgrass Rhizosphere | ELAREITEQRRKSRGAKVTVIPVDARVWDARMPLDAPAVAKALIAHLKSGS* |
Ga0066795_101122952 | 3300005938 | Soil | IQRKKQARDSKLTLIPVDARNWDAHMPLGAPAIAKTLLARLKSGG* |
Ga0066656_100708333 | 3300006034 | Soil | LQRRKQPRTGGKLTLIPVDARVWDAHMPFDAPAIAKTLLARLKSGG* |
Ga0075018_107430421 | 3300006172 | Watersheds | GELGGEITDQRRKSRGAKLTLIPVDARVWHAHMPLDAPAIAKTLLARLKSGT* |
Ga0074049_128311871 | 3300006580 | Soil | PAGELAGEIASQRRKSRGARLTLIPVDARVWHAHMPLDAPPIAKTLLTRLKSGS* |
Ga0079220_109076271 | 3300006806 | Agricultural Soil | KRKAGNVTLIPVDARDWAAHIPTDAPDVAKNLLARLKGGT* |
Ga0075429_1009760551 | 3300006880 | Populus Rhizosphere | ARAIAEQRRRQRGTRLTLIPVDARNWEAHMPLDAPGIAKTLLTRLRTGA* |
Ga0075424_1015071501 | 3300006904 | Populus Rhizosphere | QRRKSRGAKATVIPIDARNWDARLPTDAPDVAKTLLTRLKSGG* |
Ga0099794_105716512 | 3300007265 | Vadose Zone Soil | LLMGTSLSPAGELAVEIALQRRKQPRTGGKLTLIPVDARVWEAHMPFDAPVIAKTLLARLKSGV* |
Ga0099827_110739362 | 3300009090 | Vadose Zone Soil | LSPAAELAGEIALQRRKQPRTGGKLTLIPVDARVWDAHMPFDAPAIAKTLLARLKSGG* |
Ga0099827_113128541 | 3300009090 | Vadose Zone Soil | TTNVTLIPVDARTWDAHMPLDAPVIAKTLLARLKAGQ* |
Ga0105245_123594141 | 3300009098 | Miscanthus Rhizosphere | AREITEQRRKSRGAKVTVIPVDARVWDARMPLDAPAIAKALLAHLKSGS* |
Ga0111538_115702691 | 3300009156 | Populus Rhizosphere | QRRRLRGTRLTLIPVDASNWEAHVPLDAPGIAKTLLARLRTGA* |
Ga0075423_102963443 | 3300009162 | Populus Rhizosphere | GGKLVLIPVDARDWEARMPLDAPPIAKTLLARLRSGT* |
Ga0105242_106124612 | 3300009176 | Miscanthus Rhizosphere | RKSRGARLTLIPVDAQVWHAHMPLDAPPIAKTLLTRLKSGS* |
Ga0105237_109664412 | 3300009545 | Corn Rhizosphere | SRGARLSIIPVDARVWHAHIPLDAPAVAKTLLTRLKSGS* |
Ga0105855_12174071 | 3300009649 | Permafrost Soil | KTRGAKVTLIPVDARVWDAHMPFDAPAVAKTLLARLKSGS* |
Ga0126307_107401082 | 3300009789 | Serpentine Soil | MSERPLSELAREITDQRRKSRGAKVTVIPVDARVWDARMPLDAPAVAKALLAHLKSGS* |
Ga0126313_108837581 | 3300009840 | Serpentine Soil | KLTLIPVDASTWSAHMPLDAPEIAKSLIARLKAGA* |
Ga0126370_117721962 | 3300010358 | Tropical Forest Soil | VTLIPVDARDWGSYVPNDAPEIAKSLLARLKRGT* |
Ga0126370_121498442 | 3300010358 | Tropical Forest Soil | KQNRAGGGKMVLIPVDARDWDARMPIDAPAIAKTLVARLKSGN* |
Ga0134122_115381991 | 3300010400 | Terrestrial Soil | QRKKNRAKVTLIPVDARDWGAYIPNDAPEVAKSLLTRLKRGT* |
Ga0134123_107509561 | 3300010403 | Terrestrial Soil | LTLIPVDARNWEAHMPLDAPAIAKTLLARLRTGA* |
Ga0105246_111446121 | 3300011119 | Miscanthus Rhizosphere | DQRRKSRGARVTLIPVDARVWTAHMPLDAPAVAKTLLARLKSGT* |
Ga0137376_101906891 | 3300012208 | Vadose Zone Soil | MGTSLAPAGELAGEIADQRKRQPRKGGKLTLIPVDARVWDAYMPFDAPEIAKTLLARLRTGS* |
Ga0137379_113014001 | 3300012209 | Vadose Zone Soil | AIAEQRKRQRGVKLVLIPIDARNWDAHMPIDAPPIARALSS* |
Ga0150985_1026197363 | 3300012212 | Avena Fatua Rhizosphere | NRTGGRLVLIPVDARDWNARMPLDAPPIAKNLIERLKRGA* |
Ga0150985_1064479782 | 3300012212 | Avena Fatua Rhizosphere | GELATDIRDQGRRQRGGKLVLIPVDARDWDAKMPLDAPPIAKTLIERLKKGA* |
Ga0150985_1165453691 | 3300012212 | Avena Fatua Rhizosphere | GGRAGRRDRHQRRRSRAAKVTLIPVDARVWDAHMPLDAPPIAKTLLARLKSGS* |
Ga0137372_108133101 | 3300012350 | Vadose Zone Soil | TDQRRKPTRGGRVVLIPIDARTWEAHMPTDAPALAKTLLTRLRSGT* |
Ga0150984_1043995862 | 3300012469 | Avena Fatua Rhizosphere | RKSRTAKITLIPVDARNWDAYVPVDAPPVAKNVLARLRTGA* |
Ga0150984_1050550271 | 3300012469 | Avena Fatua Rhizosphere | KSRAAKVTLIPVDARVWDAHMPLDAPAIAKALLARLKSGS* |
Ga0137397_109686202 | 3300012685 | Vadose Zone Soil | ARAIAEQRRKSRGAKATLIPVDARNWDAHLPTDAPANAKTRLPRVRSGT* |
Ga0137397_110523212 | 3300012685 | Vadose Zone Soil | ARAIAEQRRKSRGAKATLIPVDARNWDAHLPTDAPANAKTLLSRLRSGT* |
Ga0137394_100717561 | 3300012922 | Vadose Zone Soil | RRKSRSTRTTLIPVDARNWDAHLPHDAPASAKTLLTRVRTGA* |
Ga0137394_105110883 | 3300012922 | Vadose Zone Soil | SRSKVTLIPVDARDWAAHIPTDAPDVAKSLLAKLKGGT* |
Ga0137419_116690951 | 3300012925 | Vadose Zone Soil | GELAGEIADQRRKARGLRLTLIPVDARVWDAHMPFDAPPIAKTLLTRLKSGA* |
Ga0164302_107381862 | 3300012961 | Soil | GAGKLVLIPVDARDWEARMPLDAPPVAKTLLARLKSGT* |
Ga0126369_126918432 | 3300012971 | Tropical Forest Soil | ELATAINEQRRKPRSGKVTLIPVDARVWDARMPTDAPTIAKTVIARLRTGA* |
Ga0164309_117328161 | 3300012984 | Soil | VTLIPVDARDWGAYIPNDAPEVAKSLLTRLKRGT* |
Ga0167648_10685182 | 3300015171 | Glacier Forefield Soil | PAGELAGEIADQRKKSRGAKLTLIPVDARIWNAHIPLDAPAIAKTLLSRLKSGT* |
Ga0137403_109743322 | 3300015264 | Vadose Zone Soil | GTSLAPASELAGEIADQRKRQSRKGGKLTLIPVDARVWDAHMPFDAPEIAKTLLTRLRTGS* |
Ga0132255_1040894471 | 3300015374 | Arabidopsis Rhizosphere | RGTRLTLIPVDARNWEAHMPLDAPGIAKTLLARLRTGA* |
Ga0163161_117774342 | 3300017792 | Switchgrass Rhizosphere | SRGARLTLIPVDARVWDAHMPLDAPAIAKSLIARLKAGR |
Ga0187780_110660612 | 3300017973 | Tropical Peatland | AKVTLIPVDLRDWDAHIPTDAPAVAKSLITRLRTGQ |
Ga0184608_104170331 | 3300018028 | Groundwater Sediment | QRRRQRGAKLTLIPVDARNWDAHMPVDAPGIAKTLLARLRSGA |
Ga0187765_108748742 | 3300018060 | Tropical Peatland | MGTSLAGAGELAKAIAEQRRKQKNLKVTLIPVDARVWDAHMPLDAPDFAKNLIARLKRGN |
Ga0184617_10916351 | 3300018066 | Groundwater Sediment | KRQPRKGGKLTLIPVDARVWDAHMPFDAPEIAKTLLARLRTGS |
Ga0193728_12002732 | 3300019890 | Soil | RRKSRGAKVTLIPVDARVWNAHMPLDAPAIARTLLARLKSGT |
Ga0193692_11128792 | 3300020000 | Soil | AGELAGEIADQRRKSRGARVTLIPVDARVWNAHMPLDAPAIAKTLMARLKSGT |
Ga0193749_10491221 | 3300020010 | Soil | LLLGTTLASAGELGGEITDQRRKSRGARLTLIPVDARVWTAHMPLDAPPIAKTLLARLKSGT |
Ga0210382_104868421 | 3300021080 | Groundwater Sediment | DQRRKSRSAKLTLIPVDARVWDAHMPLDAPPIAKSLLARLKTGA |
Ga0213880_102329012 | 3300021953 | Exposed Rock | ALAGELATAIAEQRKRQRASKIALIPVDARNWDAHIPLDAPAFAKTLIARLKTGQ |
Ga0222622_100399611 | 3300022756 | Groundwater Sediment | EIANQRRKWKGARLTLIPVDARVWDAHMPLDAPPIAKSLITRLKTGR |
Ga0222622_110312571 | 3300022756 | Groundwater Sediment | APAAELAREITDQRRKSRGAKVTVIPVDARVWDARMPLDAPAVAKALLAHLKSGS |
Ga0208355_10146621 | 3300025581 | Arctic Peat Soil | ISAQRRKARAPGAKVTVIPVDTRVWDAHIPVDAPAAVKNLLARLRGGT |
Ga0209540_105761391 | 3300025888 | Arctic Peat Soil | PGAKVTVIPVDTRVWDAHIPVDAPAAVKNLLARLRGGT |
Ga0207671_111446942 | 3300025914 | Corn Rhizosphere | SRGARLSIIPVDARVWHAHIPLDAPAVAKTLLTRLKSGS |
Ga0207657_108792262 | 3300025919 | Corn Rhizosphere | RAGGGKLVLIPVDARDWEARMPLDAPPIAKTLLARLRSGT |
Ga0207687_111817502 | 3300025927 | Miscanthus Rhizosphere | RKQRKGGKLTLIPVDASVWDAHMPFDAPEVAKTLLARLKSGG |
Ga0207691_112260572 | 3300025940 | Miscanthus Rhizosphere | GARLTVIPVDARVWDARMPLDAPAVAKALLAHLKSGS |
Ga0207691_117641652 | 3300025940 | Miscanthus Rhizosphere | AIAEQRRRQRGTRLTLIPVDARNWEAHMPLDAPGIAKTLLARLRTGA |
Ga0207711_119367362 | 3300025941 | Switchgrass Rhizosphere | GEINEQRKKARGAKLTLIPVDARIWNAHMPLDAPAIAKTLIARLKSGT |
Ga0207651_110256352 | 3300025960 | Switchgrass Rhizosphere | DQRRKSRGAKVTVIPVDARVWDARMPLDAPAVAKTLLAHLKSGS |
Ga0207658_105353221 | 3300025986 | Switchgrass Rhizosphere | ARLTLIPVDARVWNAHMPLDAPAIAKTLLARLKSGA |
Ga0207639_111155181 | 3300026041 | Corn Rhizosphere | EITNQRRRSRGARLSIIPVDARVWHAHIPLDAPAVAKTLLTRLKSGS |
Ga0207675_1020723511 | 3300026118 | Switchgrass Rhizosphere | ADQRRKSRGARLTLIPVDARVWDAHMPLDAPPIAKSLLTKLKRGG |
Ga0209465_105943311 | 3300027874 | Tropical Forest Soil | LAAEITNQRRRSRGARLTIIPVDARVWHAHIPLDAPAIAKTLLTRLKSGS |
Ga0209590_109705652 | 3300027882 | Vadose Zone Soil | TTNVTLIPVDARTWDAHMPLDAPVIAKTLLARLKAGQ |
Ga0209583_105624101 | 3300027910 | Watersheds | ASSPAGEIADQRRKSRGARLTLIPIDARVWDAHMPLDAPAVAKTLLARLKSGT |
Ga0307504_102053141 | 3300028792 | Soil | ARTGRQLTLIPVDARVWDAHMPFDAPAIAKTLLARLKSGG |
Ga0307305_101086951 | 3300028807 | Soil | PAGELAVEIALQRRKQPRTGGKLTLIPVDARVWDAHMPFDAPAIAKTLLVRLKSGV |
Ga0307312_111001782 | 3300028828 | Soil | RGVNLTLIPVDAGVWDAHMPFDAPAIAKTLLARLKSGA |
Ga0170824_1071699051 | 3300031231 | Forest Soil | PAGELAGEIANQRRKSRGSRLTLIPVDAQVWHAHMPLDAPPIAKTLLMRLKSGS |
Ga0265328_101368852 | 3300031239 | Rhizosphere | RRIRNSKVTLIPVDARDWAAHIPTDAPDIVKILLAKLKSGT |
Ga0170819_142818971 | 3300031469 | Forest Soil | DEVCVFLMGTSIAPAGELGGEIASQRRKQRSTKVTLIPIDARDWEALMPLDAPPIAKTLLTRLKSGS |
Ga0170818_1140924641 | 3300031474 | Forest Soil | PAGELAGEIASQRRKSRGSRLTLIPVDAQVWHAHMPLDAPPIAKTLLMRLKSGS |
Ga0318534_100760581 | 3300031544 | Soil | QRRRAARGGSRVTLIPVDARDWDARMPTDAPPVAKTLLTRLRTGA |
Ga0315281_116364051 | 3300032163 | Sediment | LGELAGEIADQRRKSRGAKVTLIPVDARVWDAHMPLDAPAFAKTLLARLKSGT |
Ga0307471_1006458183 | 3300032180 | Hardwood Forest Soil | AGELAGEIANQRRRSRGAKLTLIPVDASIWSAHMPLDAPDIAKTLIARLKSGG |
Ga0307472_1025366942 | 3300032205 | Hardwood Forest Soil | QRRKSRGAAATLIPVDARNWDAHLPTDAPENAKTLLARVRSGT |
Ga0335070_115194622 | 3300032829 | Soil | KGANVTLIPIDARDWAAHIPTDAPEVAKNLLTRLKGGT |
Ga0364943_0396826_3_137 | 3300034354 | Sediment | KRQPRKGGGKLTLIPVDARVWDAHMPFDAPAIAKTLLARLRTGS |
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