NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101782

Metagenome / Metatranscriptome Family F101782

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101782
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 46 residues
Representative Sequence RRKSRGARLTLIPVDARVWNAHMPLDAPAIAKTLLARLKSGA
Number of Associated Samples 93
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.02 %
% of genes near scaffold ends (potentially truncated) 95.10 %
% of genes from short scaffolds (< 2000 bps) 92.16 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (67.647 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(12.745 % of family members)
Environment Ontology (ENVO) Unclassified
(41.176 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(50.980 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70
1P3_CLC_02805230
2JGI25383J37093_100850632
3JGI20214J51650_106839412
4Ga0063455_1017013252
5Ga0066395_105312661
6Ga0065715_107659731
7Ga0070660_1013558422
8Ga0070669_1006802342
9Ga0070673_1020299272
10Ga0070705_1011525022
11Ga0070700_1004851171
12Ga0070699_1009831312
13Ga0073909_107141721
14Ga0070684_1015697192
15Ga0070697_1012154981
16Ga0068853_1015544441
17Ga0070672_1000892521
18Ga0068858_1015732642
19Ga0068860_1021439381
20Ga0068862_1013797252
21Ga0066795_101122952
22Ga0066656_100708333
23Ga0075018_107430421
24Ga0074049_128311871
25Ga0079220_109076271
26Ga0075429_1009760551
27Ga0075424_1015071501
28Ga0099794_105716512
29Ga0099827_110739362
30Ga0099827_113128541
31Ga0105245_123594141
32Ga0111538_115702691
33Ga0075423_102963443
34Ga0105242_106124612
35Ga0105237_109664412
36Ga0105855_12174071
37Ga0126307_107401082
38Ga0126313_108837581
39Ga0126370_117721962
40Ga0126370_121498442
41Ga0134122_115381991
42Ga0134123_107509561
43Ga0105246_111446121
44Ga0137376_101906891
45Ga0137379_113014001
46Ga0150985_1026197363
47Ga0150985_1064479782
48Ga0150985_1165453691
49Ga0137372_108133101
50Ga0150984_1043995862
51Ga0150984_1050550271
52Ga0137397_109686202
53Ga0137397_110523212
54Ga0137394_100717561
55Ga0137394_105110883
56Ga0137419_116690951
57Ga0164302_107381862
58Ga0126369_126918432
59Ga0164309_117328161
60Ga0167648_10685182
61Ga0137403_109743322
62Ga0132255_1040894471
63Ga0163161_117774342
64Ga0187780_110660612
65Ga0184608_104170331
66Ga0187765_108748742
67Ga0184617_10916351
68Ga0193728_12002732
69Ga0193692_11128792
70Ga0193749_10491221
71Ga0210382_104868421
72Ga0213880_102329012
73Ga0222622_100399611
74Ga0222622_110312571
75Ga0208355_10146621
76Ga0209540_105761391
77Ga0207671_111446942
78Ga0207657_108792262
79Ga0207687_111817502
80Ga0207691_112260572
81Ga0207691_117641652
82Ga0207711_119367362
83Ga0207651_110256352
84Ga0207658_105353221
85Ga0207639_111155181
86Ga0207675_1020723511
87Ga0209465_105943311
88Ga0209590_109705652
89Ga0209583_105624101
90Ga0307504_102053141
91Ga0307305_101086951
92Ga0307312_111001782
93Ga0170824_1071699051
94Ga0265328_101368852
95Ga0170819_142818971
96Ga0170818_1140924641
97Ga0318534_100760581
98Ga0315281_116364051
99Ga0307471_1006458183
100Ga0307472_1025366942
101Ga0335070_115194622
102Ga0364943_0396826_3_137
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 22.86%    β-sheet: 0.00%    Coil/Unstructured: 77.14%
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Variant

510152025303540RRKSRGARLTLIPVDARVWNAHMPLDAPAIAKTLLARLKSGASequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
32.4%67.6%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Sediment
Wetland
Groundwater Sediment
Watersheds
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Serpentine Soil
Glacier Forefield Soil
Surface Soil
Agricultural Soil
Arctic Peat Soil
Soil
Soil
Grasslands Soil
Soil
Forest Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Permafrost Soil
Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Exposed Rock
Sediment
Arabidopsis Rhizosphere
Miscanthus Rhizosphere
Avena Fatua Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Avena Fatua Rhizosphere
7.8%12.7%2.9%2.9%3.9%2.9%3.9%3.9%3.9%3.9%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
P3_CLC_028052302124908041SoilLPISGAKVTVIPVDTRVWDAHIPVDAPAVVKNLLARLRGGT
JGI25383J37093_1008506323300002560Grasslands SoilRAIADQRRKSRGTKATLIPVDARNWDAHLPHDAPASAKTLLARVRTGA*
JGI20214J51650_1068394123300003541WetlandGDLAGEIADQRKKSRGAKVTLIPVDARVWDAHIPLDAPAIAKTLIARLKSGT*
Ga0063455_10170132523300004153SoilIAEQRRRSRGARLTLIPVDARVWDAHMPLDAPPIAKSLLARLKSGG*
Ga0066395_1053126613300004633Tropical Forest SoilAEITNQRRRSRGARLTIIPVDARVWHAHIPLDAPAIAKTLLTRLKSGS*
Ga0065715_1076597313300005293Miscanthus RhizosphereRQRGTRLTLIPVDARNWEAHMPIDAPGIAKTLLARLRTGT*
Ga0070660_10135584223300005339Corn RhizosphereRAGGGKLVLIPVDARDWEARMPLDAPPIAKTLLARLRSGT*
Ga0070669_10068023423300005353Switchgrass RhizosphereDQRRKSRGAKVTVIPVDARVWDARMPLDAPAVAKALLAHLKSGS*
Ga0070673_10202992723300005364Switchgrass RhizosphereRRKSRGARLTLIPVDARVWNAHMPLDAPAIAKTLLARLKSGA*
Ga0070705_10115250223300005440Corn, Switchgrass And Miscanthus RhizosphereKHGKAGGGKLVLIPVDARDWDARMPLDAPPIAKTLLAKLKSGT*
Ga0070700_10048511713300005441Corn, Switchgrass And Miscanthus RhizospherePAGELAGEIAGQRRKSRGAKVTLIPVDVSIWHAHMPLDAPEIAKSLIAKLKSGG*
Ga0070699_10098313123300005518Corn, Switchgrass And Miscanthus RhizosphereAGGGKLVLIPVDARDWDARMPLDAPPIAKTLLAKLKSGT*
Ga0073909_1071417213300005526Surface SoilALVPAGELAGEIADQRRKSRGARVTLIPVDARVWNAHMPLDAPAIAKTLVARLKSGT*
Ga0070684_10156971923300005535Corn RhizosphereSRGAKITLIPVDARIWNAHMPLDAPAIAKTLLARLKSGT*
Ga0070697_10121549813300005536Corn, Switchgrass And Miscanthus RhizosphereRKKSRSKVTLIPVDARDWAAHIPTDAPDVAKNLLARLKGGT*
Ga0068853_10155444413300005539Corn RhizosphereRRSRGARLSIIPVDARVWHAHIPLDAPAVAKTLLTRLKSGS*
Ga0070672_10008925213300005543Miscanthus RhizosphereGLTLIPVDARNWEAHMPLDAPAIAKTLLARLRTGA*
Ga0068858_10157326423300005842Switchgrass RhizosphereAELAREITDQRRKSRGAKVTVIPVDARVWDARMPLDAPAVAKTLLARLKSGS*
Ga0068860_10214393813300005843Switchgrass RhizosphereRRRPSRGCKVTLIPVDASVWSAHMPLDAPGVAKDLLTRLRSNV*
Ga0068862_10137972523300005844Switchgrass RhizosphereELAREITEQRRKSRGAKVTVIPVDARVWDARMPLDAPAVAKALIAHLKSGS*
Ga0066795_1011229523300005938SoilIQRKKQARDSKLTLIPVDARNWDAHMPLGAPAIAKTLLARLKSGG*
Ga0066656_1007083333300006034SoilLQRRKQPRTGGKLTLIPVDARVWDAHMPFDAPAIAKTLLARLKSGG*
Ga0075018_1074304213300006172WatershedsGELGGEITDQRRKSRGAKLTLIPVDARVWHAHMPLDAPAIAKTLLARLKSGT*
Ga0074049_1283118713300006580SoilPAGELAGEIASQRRKSRGARLTLIPVDARVWHAHMPLDAPPIAKTLLTRLKSGS*
Ga0079220_1090762713300006806Agricultural SoilKRKAGNVTLIPVDARDWAAHIPTDAPDVAKNLLARLKGGT*
Ga0075429_10097605513300006880Populus RhizosphereARAIAEQRRRQRGTRLTLIPVDARNWEAHMPLDAPGIAKTLLTRLRTGA*
Ga0075424_10150715013300006904Populus RhizosphereQRRKSRGAKATVIPIDARNWDARLPTDAPDVAKTLLTRLKSGG*
Ga0099794_1057165123300007265Vadose Zone SoilLLMGTSLSPAGELAVEIALQRRKQPRTGGKLTLIPVDARVWEAHMPFDAPVIAKTLLARLKSGV*
Ga0099827_1107393623300009090Vadose Zone SoilLSPAAELAGEIALQRRKQPRTGGKLTLIPVDARVWDAHMPFDAPAIAKTLLARLKSGG*
Ga0099827_1131285413300009090Vadose Zone SoilTTNVTLIPVDARTWDAHMPLDAPVIAKTLLARLKAGQ*
Ga0105245_1235941413300009098Miscanthus RhizosphereAREITEQRRKSRGAKVTVIPVDARVWDARMPLDAPAIAKALLAHLKSGS*
Ga0111538_1157026913300009156Populus RhizosphereQRRRLRGTRLTLIPVDASNWEAHVPLDAPGIAKTLLARLRTGA*
Ga0075423_1029634433300009162Populus RhizosphereGGKLVLIPVDARDWEARMPLDAPPIAKTLLARLRSGT*
Ga0105242_1061246123300009176Miscanthus RhizosphereRKSRGARLTLIPVDAQVWHAHMPLDAPPIAKTLLTRLKSGS*
Ga0105237_1096644123300009545Corn RhizosphereSRGARLSIIPVDARVWHAHIPLDAPAVAKTLLTRLKSGS*
Ga0105855_121740713300009649Permafrost SoilKTRGAKVTLIPVDARVWDAHMPFDAPAVAKTLLARLKSGS*
Ga0126307_1074010823300009789Serpentine SoilMSERPLSELAREITDQRRKSRGAKVTVIPVDARVWDARMPLDAPAVAKALLAHLKSGS*
Ga0126313_1088375813300009840Serpentine SoilKLTLIPVDASTWSAHMPLDAPEIAKSLIARLKAGA*
Ga0126370_1177219623300010358Tropical Forest SoilVTLIPVDARDWGSYVPNDAPEIAKSLLARLKRGT*
Ga0126370_1214984423300010358Tropical Forest SoilKQNRAGGGKMVLIPVDARDWDARMPIDAPAIAKTLVARLKSGN*
Ga0134122_1153819913300010400Terrestrial SoilQRKKNRAKVTLIPVDARDWGAYIPNDAPEVAKSLLTRLKRGT*
Ga0134123_1075095613300010403Terrestrial SoilLTLIPVDARNWEAHMPLDAPAIAKTLLARLRTGA*
Ga0105246_1114461213300011119Miscanthus RhizosphereDQRRKSRGARVTLIPVDARVWTAHMPLDAPAVAKTLLARLKSGT*
Ga0137376_1019068913300012208Vadose Zone SoilMGTSLAPAGELAGEIADQRKRQPRKGGKLTLIPVDARVWDAYMPFDAPEIAKTLLARLRTGS*
Ga0137379_1130140013300012209Vadose Zone SoilAIAEQRKRQRGVKLVLIPIDARNWDAHMPIDAPPIARALSS*
Ga0150985_10261973633300012212Avena Fatua RhizosphereNRTGGRLVLIPVDARDWNARMPLDAPPIAKNLIERLKRGA*
Ga0150985_10644797823300012212Avena Fatua RhizosphereGELATDIRDQGRRQRGGKLVLIPVDARDWDAKMPLDAPPIAKTLIERLKKGA*
Ga0150985_11654536913300012212Avena Fatua RhizosphereGGRAGRRDRHQRRRSRAAKVTLIPVDARVWDAHMPLDAPPIAKTLLARLKSGS*
Ga0137372_1081331013300012350Vadose Zone SoilTDQRRKPTRGGRVVLIPIDARTWEAHMPTDAPALAKTLLTRLRSGT*
Ga0150984_10439958623300012469Avena Fatua RhizosphereRKSRTAKITLIPVDARNWDAYVPVDAPPVAKNVLARLRTGA*
Ga0150984_10505502713300012469Avena Fatua RhizosphereKSRAAKVTLIPVDARVWDAHMPLDAPAIAKALLARLKSGS*
Ga0137397_1096862023300012685Vadose Zone SoilARAIAEQRRKSRGAKATLIPVDARNWDAHLPTDAPANAKTRLPRVRSGT*
Ga0137397_1105232123300012685Vadose Zone SoilARAIAEQRRKSRGAKATLIPVDARNWDAHLPTDAPANAKTLLSRLRSGT*
Ga0137394_1007175613300012922Vadose Zone SoilRRKSRSTRTTLIPVDARNWDAHLPHDAPASAKTLLTRVRTGA*
Ga0137394_1051108833300012922Vadose Zone SoilSRSKVTLIPVDARDWAAHIPTDAPDVAKSLLAKLKGGT*
Ga0137419_1166909513300012925Vadose Zone SoilGELAGEIADQRRKARGLRLTLIPVDARVWDAHMPFDAPPIAKTLLTRLKSGA*
Ga0164302_1073818623300012961SoilGAGKLVLIPVDARDWEARMPLDAPPVAKTLLARLKSGT*
Ga0126369_1269184323300012971Tropical Forest SoilELATAINEQRRKPRSGKVTLIPVDARVWDARMPTDAPTIAKTVIARLRTGA*
Ga0164309_1173281613300012984SoilVTLIPVDARDWGAYIPNDAPEVAKSLLTRLKRGT*
Ga0167648_106851823300015171Glacier Forefield SoilPAGELAGEIADQRKKSRGAKLTLIPVDARIWNAHIPLDAPAIAKTLLSRLKSGT*
Ga0137403_1097433223300015264Vadose Zone SoilGTSLAPASELAGEIADQRKRQSRKGGKLTLIPVDARVWDAHMPFDAPEIAKTLLTRLRTGS*
Ga0132255_10408944713300015374Arabidopsis RhizosphereRGTRLTLIPVDARNWEAHMPLDAPGIAKTLLARLRTGA*
Ga0163161_1177743423300017792Switchgrass RhizosphereSRGARLTLIPVDARVWDAHMPLDAPAIAKSLIARLKAGR
Ga0187780_1106606123300017973Tropical PeatlandAKVTLIPVDLRDWDAHIPTDAPAVAKSLITRLRTGQ
Ga0184608_1041703313300018028Groundwater SedimentQRRRQRGAKLTLIPVDARNWDAHMPVDAPGIAKTLLARLRSGA
Ga0187765_1087487423300018060Tropical PeatlandMGTSLAGAGELAKAIAEQRRKQKNLKVTLIPVDARVWDAHMPLDAPDFAKNLIARLKRGN
Ga0184617_109163513300018066Groundwater SedimentKRQPRKGGKLTLIPVDARVWDAHMPFDAPEIAKTLLARLRTGS
Ga0193728_120027323300019890SoilRRKSRGAKVTLIPVDARVWNAHMPLDAPAIARTLLARLKSGT
Ga0193692_111287923300020000SoilAGELAGEIADQRRKSRGARVTLIPVDARVWNAHMPLDAPAIAKTLMARLKSGT
Ga0193749_104912213300020010SoilLLLGTTLASAGELGGEITDQRRKSRGARLTLIPVDARVWTAHMPLDAPPIAKTLLARLKSGT
Ga0210382_1048684213300021080Groundwater SedimentDQRRKSRSAKLTLIPVDARVWDAHMPLDAPPIAKSLLARLKTGA
Ga0213880_1023290123300021953Exposed RockALAGELATAIAEQRKRQRASKIALIPVDARNWDAHIPLDAPAFAKTLIARLKTGQ
Ga0222622_1003996113300022756Groundwater SedimentEIANQRRKWKGARLTLIPVDARVWDAHMPLDAPPIAKSLITRLKTGR
Ga0222622_1103125713300022756Groundwater SedimentAPAAELAREITDQRRKSRGAKVTVIPVDARVWDARMPLDAPAVAKALLAHLKSGS
Ga0208355_101466213300025581Arctic Peat SoilISAQRRKARAPGAKVTVIPVDTRVWDAHIPVDAPAAVKNLLARLRGGT
Ga0209540_1057613913300025888Arctic Peat SoilPGAKVTVIPVDTRVWDAHIPVDAPAAVKNLLARLRGGT
Ga0207671_1114469423300025914Corn RhizosphereSRGARLSIIPVDARVWHAHIPLDAPAVAKTLLTRLKSGS
Ga0207657_1087922623300025919Corn RhizosphereRAGGGKLVLIPVDARDWEARMPLDAPPIAKTLLARLRSGT
Ga0207687_1118175023300025927Miscanthus RhizosphereRKQRKGGKLTLIPVDASVWDAHMPFDAPEVAKTLLARLKSGG
Ga0207691_1122605723300025940Miscanthus RhizosphereGARLTVIPVDARVWDARMPLDAPAVAKALLAHLKSGS
Ga0207691_1176416523300025940Miscanthus RhizosphereAIAEQRRRQRGTRLTLIPVDARNWEAHMPLDAPGIAKTLLARLRTGA
Ga0207711_1193673623300025941Switchgrass RhizosphereGEINEQRKKARGAKLTLIPVDARIWNAHMPLDAPAIAKTLIARLKSGT
Ga0207651_1102563523300025960Switchgrass RhizosphereDQRRKSRGAKVTVIPVDARVWDARMPLDAPAVAKTLLAHLKSGS
Ga0207658_1053532213300025986Switchgrass RhizosphereARLTLIPVDARVWNAHMPLDAPAIAKTLLARLKSGA
Ga0207639_1111551813300026041Corn RhizosphereEITNQRRRSRGARLSIIPVDARVWHAHIPLDAPAVAKTLLTRLKSGS
Ga0207675_10207235113300026118Switchgrass RhizosphereADQRRKSRGARLTLIPVDARVWDAHMPLDAPPIAKSLLTKLKRGG
Ga0209465_1059433113300027874Tropical Forest SoilLAAEITNQRRRSRGARLTIIPVDARVWHAHIPLDAPAIAKTLLTRLKSGS
Ga0209590_1097056523300027882Vadose Zone SoilTTNVTLIPVDARTWDAHMPLDAPVIAKTLLARLKAGQ
Ga0209583_1056241013300027910WatershedsASSPAGEIADQRRKSRGARLTLIPIDARVWDAHMPLDAPAVAKTLLARLKSGT
Ga0307504_1020531413300028792SoilARTGRQLTLIPVDARVWDAHMPFDAPAIAKTLLARLKSGG
Ga0307305_1010869513300028807SoilPAGELAVEIALQRRKQPRTGGKLTLIPVDARVWDAHMPFDAPAIAKTLLVRLKSGV
Ga0307312_1110017823300028828SoilRGVNLTLIPVDAGVWDAHMPFDAPAIAKTLLARLKSGA
Ga0170824_10716990513300031231Forest SoilPAGELAGEIANQRRKSRGSRLTLIPVDAQVWHAHMPLDAPPIAKTLLMRLKSGS
Ga0265328_1013688523300031239RhizosphereRRIRNSKVTLIPVDARDWAAHIPTDAPDIVKILLAKLKSGT
Ga0170819_1428189713300031469Forest SoilDEVCVFLMGTSIAPAGELGGEIASQRRKQRSTKVTLIPIDARDWEALMPLDAPPIAKTLLTRLKSGS
Ga0170818_11409246413300031474Forest SoilPAGELAGEIASQRRKSRGSRLTLIPVDAQVWHAHMPLDAPPIAKTLLMRLKSGS
Ga0318534_1007605813300031544SoilQRRRAARGGSRVTLIPVDARDWDARMPTDAPPVAKTLLTRLRTGA
Ga0315281_1163640513300032163SedimentLGELAGEIADQRRKSRGAKVTLIPVDARVWDAHMPLDAPAFAKTLLARLKSGT
Ga0307471_10064581833300032180Hardwood Forest SoilAGELAGEIANQRRRSRGAKLTLIPVDASIWSAHMPLDAPDIAKTLIARLKSGG
Ga0307472_10253669423300032205Hardwood Forest SoilQRRKSRGAAATLIPVDARNWDAHLPTDAPENAKTLLARVRSGT
Ga0335070_1151946223300032829SoilKGANVTLIPIDARDWAAHIPTDAPEVAKNLLTRLKGGT
Ga0364943_0396826_3_1373300034354SedimentKRQPRKGGGKLTLIPVDARVWDAHMPFDAPAIAKTLLARLRTGS


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