Metagenome / Metatranscriptome Family F101803

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101803
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	80 residues
Representative Sequence	PLAIRIGHGVTLLLGLLILGSWFFSGRGTNRRGTVLGWSGGIRLMALAFAMMIVVAFAIAIPAQVFLSNRLSAPP
Number of Associated Samples	79
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	3.03 %
% of genes near scaffold ends (potentially truncated)	84.31 %
% of genes from short scaffolds (< 2000 bps)	89.22 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (25.490 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.765 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.22% β-sheet: 0.00% Coil/Unstructured: 40.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF08818	DUF1801	28.43
PF13376	OmdA	27.45
PF00903	Glyoxalase	4.90
PF03734	YkuD	2.94
PF08002	DUF1697	1.96
PF07883	Cupin_2	0.98
PF00891	Methyltransf_2	0.98
PF08922	DUF1905	0.98
PF03243	MerB	0.98
PF03795	YCII	0.98
PF01734	Patatin	0.98
PF04389	Peptidase_M28	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	28.43
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	28.43
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	28.43
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	2.94
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	2.94
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	1.96
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.98
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.98
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.98
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	12.75 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	12.75 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	5.88 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	3.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	5.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.92 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.98 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.92 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Brevibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Brevibacillus	0.98 %
Verrucomicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.92 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
unclassified Brevibacillus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Brevibacillus → unclassified Brevibacillus	0.98 %
unclassified Verrucomicrobium	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.92 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Verrucomicrobium sp. BvORR034	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. BvORR034	0.98 %
Brevibacillus sp. YIM B02290	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Brevibacillus → unclassified Brevibacillus → Brevibacillus sp. YIM B02290	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17029581	All Organisms → cellular organisms → Bacteria → Proteobacteria	1530	Open in IMG/M
2170459024\|GZTSFBX01C1UGL	Not Available	525	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100672337	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	858	Open in IMG/M
3300000787\|JGI11643J11755_11764996	Not Available	575	Open in IMG/M
3300000955\|JGI1027J12803_102586513	Not Available	552	Open in IMG/M
3300004479\|Ga0062595_101326097	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300005289\|Ga0065704_10218772	Not Available	1082	Open in IMG/M
3300005332\|Ga0066388_100029992	All Organisms → cellular organisms → Bacteria	5077	Open in IMG/M
3300005332\|Ga0066388_103142902	Not Available	844	Open in IMG/M
3300005337\|Ga0070682_101447572	Not Available	589	Open in IMG/M
3300005345\|Ga0070692_11267918	Not Available	527	Open in IMG/M
3300005347\|Ga0070668_102156352	Not Available	515	Open in IMG/M
3300005355\|Ga0070671_100100020	All Organisms → cellular organisms → Bacteria	2433	Open in IMG/M
3300005356\|Ga0070674_101803932	Not Available	555	Open in IMG/M
3300005366\|Ga0070659_101326053	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300005445\|Ga0070708_102043436	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300005540\|Ga0066697_10375288	Not Available	827	Open in IMG/M
3300005556\|Ga0066707_10464613	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300005713\|Ga0066905_101275532	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300005764\|Ga0066903_103394025	Not Available	860	Open in IMG/M
3300005764\|Ga0066903_105340510	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300005764\|Ga0066903_105843305	Not Available	646	Open in IMG/M
3300005937\|Ga0081455_10390010	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300006172\|Ga0075018_10331243	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300006852\|Ga0075433_11500944	Not Available	582	Open in IMG/M
3300006904\|Ga0075424_102287222	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300009094\|Ga0111539_12677388	Not Available	578	Open in IMG/M
3300009162\|Ga0075423_10849176	Not Available	967	Open in IMG/M
3300009162\|Ga0075423_11287595	Not Available	781	Open in IMG/M
3300010358\|Ga0126370_11076194	Not Available	739	Open in IMG/M
3300010361\|Ga0126378_12621453	Not Available	576	Open in IMG/M
3300010361\|Ga0126378_13378569	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	507	Open in IMG/M
3300010366\|Ga0126379_10044111	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. BvORR034	3619	Open in IMG/M
3300010366\|Ga0126379_10527861	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1257	Open in IMG/M
3300010375\|Ga0105239_10812179	Not Available	1072	Open in IMG/M
3300010397\|Ga0134124_13077980	Not Available	510	Open in IMG/M
3300010398\|Ga0126383_12324516	Not Available	622	Open in IMG/M
3300010398\|Ga0126383_13600899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Brevibacillus → unclassified Brevibacillus → Brevibacillus sp. YIM B02290	506	Open in IMG/M
3300010400\|Ga0134122_12164386	Not Available	599	Open in IMG/M
3300010401\|Ga0134121_10912289	Not Available	854	Open in IMG/M
3300012096\|Ga0137389_10309477	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1338	Open in IMG/M
3300012914\|Ga0157297_10213548	Not Available	675	Open in IMG/M
3300012948\|Ga0126375_11022316	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300012948\|Ga0126375_12118243	Not Available	500	Open in IMG/M
3300012951\|Ga0164300_10576781	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300012957\|Ga0164303_10229253	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
3300012960\|Ga0164301_10222154	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300012960\|Ga0164301_10835941	Not Available	708	Open in IMG/M
3300012961\|Ga0164302_10216615	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300012971\|Ga0126369_13699514	Not Available	501	Open in IMG/M
3300012971\|Ga0126369_13711165	Not Available	500	Open in IMG/M
3300012984\|Ga0164309_11874708	Not Available	514	Open in IMG/M
3300012985\|Ga0164308_10188075	All Organisms → cellular organisms → Bacteria	1562	Open in IMG/M
3300012987\|Ga0164307_10135978	All Organisms → cellular organisms → Bacteria	1598	Open in IMG/M
3300012987\|Ga0164307_10912046	Not Available	708	Open in IMG/M
3300012988\|Ga0164306_10298104	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300012988\|Ga0164306_11678729	Not Available	550	Open in IMG/M
3300012988\|Ga0164306_11925238	Not Available	514	Open in IMG/M
3300012989\|Ga0164305_10958263	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300013297\|Ga0157378_12075159	Not Available	619	Open in IMG/M
3300013306\|Ga0163162_10441455	All Organisms → cellular organisms → Bacteria	1434	Open in IMG/M
3300013306\|Ga0163162_12939431	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300013307\|Ga0157372_10665042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1213	Open in IMG/M
3300014745\|Ga0157377_11267542	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300015371\|Ga0132258_11932802	Not Available	1485	Open in IMG/M
3300015371\|Ga0132258_13253354	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300015371\|Ga0132258_13817055	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1026	Open in IMG/M
3300015372\|Ga0132256_100365720	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1539	Open in IMG/M
3300015374\|Ga0132255_100252711	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2519	Open in IMG/M
3300015374\|Ga0132255_101000215	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300016270\|Ga0182036_11350379	Not Available	596	Open in IMG/M
3300016294\|Ga0182041_10793697	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300016294\|Ga0182041_12075596	Not Available	530	Open in IMG/M
3300016341\|Ga0182035_10654685	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300016357\|Ga0182032_10350267	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300016387\|Ga0182040_11429813	Not Available	586	Open in IMG/M
3300016422\|Ga0182039_12239235	Not Available	504	Open in IMG/M
3300019882\|Ga0193713_1192952	Not Available	523	Open in IMG/M
3300021411\|Ga0193709_1007477	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2750	Open in IMG/M
3300021560\|Ga0126371_10338761	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300021560\|Ga0126371_10913928	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1021	Open in IMG/M
3300021560\|Ga0126371_10929953	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1013	Open in IMG/M
3300024279\|Ga0247692_1066588	Not Available	563	Open in IMG/M
3300025915\|Ga0207693_11100678	Not Available	603	Open in IMG/M
3300027907\|Ga0207428_10973782	Not Available	597	Open in IMG/M
3300030945\|Ga0075373_10973093	Not Available	505	Open in IMG/M
3300031469\|Ga0170819_16428952	All Organisms → cellular organisms → Bacteria	1121	Open in IMG/M
3300031573\|Ga0310915_10696839	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300031719\|Ga0306917_10103536	All Organisms → cellular organisms → Bacteria	2047	Open in IMG/M
3300031720\|Ga0307469_11125644	Not Available	739	Open in IMG/M
3300031744\|Ga0306918_11305721	Not Available	558	Open in IMG/M
3300031910\|Ga0306923_10734900	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1096	Open in IMG/M
3300031910\|Ga0306923_10990152	Not Available	914	Open in IMG/M
3300031941\|Ga0310912_10373507	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1109	Open in IMG/M
3300031962\|Ga0307479_10114338	All Organisms → cellular organisms → Bacteria	2628	Open in IMG/M
3300032001\|Ga0306922_10025493	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	5957	Open in IMG/M
3300032001\|Ga0306922_12386872	Not Available	505	Open in IMG/M
3300032076\|Ga0306924_11548550	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300032261\|Ga0306920_103196232	Not Available	613	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.47%
Host-Associated	Host-Associated	23.53%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.49%
Plants	Host-Associated → Plants	23.53%
Aquatic	Environmental → Aquatic	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.82%
Sediment	Environmental → Aquatic → Sediment	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.69%
Loam	Environmental → Terrestrial → Soil → Loam	9.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459024	Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02672440	2088090014	Soil	GIMLIAVILDHVVVFSEPVAIKIGHGVALLLGLVILGSWFFSVRGINRRGTVLGWSGGIRLMGLAFAMMVVVAFAIVIPVQVLLSKHLSAAP
FD1_00814620	2170459024	Grass Soil	YSVSWKSSFLFAAIMLVAVIFHHLLVFNEPVATRIGSGVVLLLGLVVLGGWFFSGRGTNRGGTVLGWPGGIRLMALAFALMVVVAFAIVMPVQVFLSNHLFTPP
INPhiseqgaiiFebDRAFT_1006723371	3300000364	Soil	RYSVSWKSSFLFAGIILVAVILHHVLASSEPAGIRIGSGIVLLLGLVILGSWFFSRRGTNRGGMVLGWSGGIRLMGLAFAMIAVVAFAIVIPAQVFLSKHVSAAP*
JGI11643J11755_117649961	3300000787	Soil	FHHVLVFSEPVAIRLGLGVXLXLXLVILGSWFFSXRGTNRHGSVLGWSGGLRLMALAFGMMIVVAFAIVIPAQVFLSNQLSQSP*
JGI1027J12803_1025865131	3300000955	Soil	SEPVAIRIGLGVVLLVGLVILGSWFFSGHGTNRRGTVLGWSGGIRLMALTFAMMIAVAFAIVVPLQVFLSNRLFASP*
Ga0062595_1013260972	3300004479	Soil	MLISVIVDHVLVFSEPLATRIGHGVVLVVGLVFLGGWFFSGRGTNRHGGVLGWPGGLRLMVLMFAMMIVVAFAIVVPVQIFLSNHLPPSP*
Ga0065704_102187722	3300005289	Switchgrass Rhizosphere	PEALRIGLGVVLLLGLVILGGWFFSGRGTNRYGSCLGWSGGIRLMALAFAMMIVVAFAIAMPTQFFLYKHLSPSP*
Ga0066388_1000299922	3300005332	Tropical Forest Soil	MVALIADDVLVVSQPMAIRIGHGVTLLIGLVILGGWFFGDRGINRRSAVLGWSGGLGMMALAFAMMIVVVFAIVVPVQLFLGNQLSPSP*
Ga0066388_1031429021	3300005332	Tropical Forest Soil	IGLGVILLLGLIIFGGWFFSGRGTNPRGSLLGWSGGIRLMALMFTMMVVVAFAIVVPVQFFLTKHLSTPP*
Ga0070682_1014475722	3300005337	Corn Rhizosphere	VIVDHVLVVSQPVVIRIGHGVVLVLGLIILGGSFFRGRGTNRRGAVLEWSDRIRLMALAFAMIVAFAIVVPVQLFLGNHLSSPP*
Ga0070692_112679181	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	PVVIRIGHGVVLVLGLIILGGSFFRGRGTNRRGAVLEWSDRIRLMALAFAMIVAFAIVVPVQLFLGNHLSSPP*
Ga0070668_1021563522	3300005347	Switchgrass Rhizosphere	FVFAGIMLVLVICEHLLVFSEPVAIRIGYGVVLLLVLIILGGWFFRGRGTNRLGAVLGWPGGIRLMALAFAMMIVVAFAIVMPVQVFLTNHLSPAP*
Ga0070671_1001000205	3300005355	Switchgrass Rhizosphere	FGSWFFSGRGTNRQDTILGWFGGLRLVALMFAMMLFLAFAIAMPVQIFLSNHLSRSP*
Ga0070674_1018039321	3300005356	Miscanthus Rhizosphere	FAGIMLVLVIFEHLLVFSEPVAIRIGYGVVLLLVLITLGGWFFRGRGTNRRGAVLGWSGGIRLMALAFAMMIVVAFAIVMPVQVFLTNHLSPAP*
Ga0070659_1013260532	3300005366	Corn Rhizosphere	FAGIMLVVVIFDHVLAFRESMAMRIVYSVVLLLGLVILGSWFFSGRGTNRRGTVLRWVGGMRLIGLAFAMLIVAAFAIVIPAQVFLSKHVSSAP*
Ga0070708_1020434362	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	ALGQPVAIRIAHVVVLLLGLLALGSWFFSERGTNRSGAVLGWRGGIRLMALAFALMFVAVFTIVFPVQVFLSNHLSSP*
Ga0066697_103752881	3300005540	Soil	MMVAVVFHHVLVFSEPVATRIGHGVMLLLALVILGGWFFRGRGTNRRGTVLGWSGGIRLMALAFAMMMFVAFAIAIPAQVS*
Ga0066707_104646131	3300005556	Soil	MMVAVVFHHVLVFSEPVATRIGHGVMLLLALVILGGWFFRGRGTNRRGTVLGWSGGIRLMALAFAMMMFVAFAIAIPAQVFLSNHLSPPPLTSG*
Ga0066905_1012755322	3300005713	Tropical Forest Soil	LLAGQIVFGSWFFSKRGTNRHGTILGWSGGLRLVALMFAMMLVLVFAIAMPVQMFLTNHLSPSP*
Ga0066903_1033940252	3300005764	Tropical Forest Soil	KVSFLFAGIIMVAVIFHHVVLFSAPVALRIGLGIVLLLGLVILGGWFFSGRGTNRRGSFLGWSGGIRLMALAFAMMIVVAFAIAMPTQFFLYKHLSPSP*
Ga0066903_1053405102	3300005764	Tropical Forest Soil	IGLGVVLLLGLVVLGGWFFSERGTNRRGTVLGWSGGIRLMALAFAMMVAVAFAIVVPFQFFLSNHVSPPP*
Ga0066903_1058433052	3300005764	Tropical Forest Soil	VVAFSEPPAIRIGYGLVLLLGLVILGSWFFSGRVINRHGAVLGWSGGIRLMALAFAIMVVVVFAIVIPVQVFLSNHLSPSP*
Ga0081455_103900101	3300005937	Tabebuia Heterophylla Rhizosphere	FLFAGIMLVIVILGHVLTFSEPLATRITHNVVLLLGLVILGGWFFSGRGTNRRGAVLGWSGGLSLMALTLAMMITVAFAIVIPVQVFLSNHLSTSP*
Ga0075018_103312431	3300006172	Watersheds	PAAIRIGHAALLLIGLVILGSWFFSKRGTDRSGAVLGWRGGIRLTALAFAMMVVVAFAIVIPVQALVR*
Ga0075433_115009442	3300006852	Populus Rhizosphere	VPWKVSFLCAGIIMVAVIFHHVVLFSAPVALRIGLGVVLLLGLVILGGWFFSGRGTDRHGSCLGWSGGIRLMALAFAMMIVVAFAIVIPAQFFLDKHLSPSP*
Ga0075424_1022872222	3300006904	Populus Rhizosphere	FHHVLVFSEPTAIRIGLGVVLLLGLVILGGWFFSGRGTNRDGSVLGWSGGMRLMALMFAMMLFVGFAIVIPAQVFLSKHLSSAP*
Ga0111539_126773882	3300009094	Populus Rhizosphere	ARSCDFGGWFFSGRGTNRQGTVLGWSDGLRLMALMFAMMIVVAFAIVVPVQIFLNNYLSPAP*
Ga0075423_108491762	3300009162	Populus Rhizosphere	YAGCFHFHHVLVFSEPTAIRIGLGVVLLLGLVILGGWFFSGRGTNRHGSYLGWSRGIRLMALAFAMMIVVAFAIVMPTQFFLDKHLSPSP*
Ga0075423_112875952	3300009162	Populus Rhizosphere	VILGGWFFSGRGTNRQGTVLGWSDGLRLMALMFAMMIVVAFAIVVPVQIFLNNYLSPAP*
Ga0126370_110761941	3300010358	Tropical Forest Soil	LVFSQPSAIRIANGVVLVLALVILGGWFFSRRGTNRSGVVLGWSGGLSLMALTFAMMITVAFAIVIPIQVFLSNHLSTPP*
Ga0126376_110109402	3300010359	Tropical Forest Soil	LVLLLVLVIFGSWFFSARGVNRRGTLLGWGGGIRLIALAFAMMVVVAFAIVLPTQVFLSRHLFPSP*
Ga0126378_126214532	3300010361	Tropical Forest Soil	LVLLGSWFFSGRGRNRGGAVLGWPGGLRLMALTFAMIIVVAFAIVIPVQVFLSNHLSQSP
Ga0126378_133785692	3300010361	Tropical Forest Soil	VAIRIGHGMVLLVVLVTFGSWFFSRRGTNRRGTVLGWGRGIQLIALAFAVMAVVAFAIVIPAQFFLSKHLPSLP*
Ga0126379_100441111	3300010366	Tropical Forest Soil	MAIRIGHGVVLLLGLVVLGGWFFRNRGINPRGTVLGWSGGLRLMALMFAMMIAVAFAIVIPVQAFLSKNVSPSP*
Ga0126379_105278611	3300010366	Tropical Forest Soil	LQWASSAFLKFAARVLRYSLSWKSSFVFAGIIMVALIADHVLVVSQPTAVRIGHGVPLLIGLVILSGWFFGDRGTNRRGTVLGWSGGLGMMALAFAMMIVVV
Ga0105239_108121792	3300010375	Corn Rhizosphere	VDHVLVVSQPVVIRIGHGVVLVLGLIILGGSFFRGRGTNRRGAVLEWSDRIRLMALAFAMIVAFAIVVPVQLFLGNHLSSPP*
Ga0134124_130779801	3300010397	Terrestrial Soil	QPVVIRIGHGVVLVLGLIILGGSFFRGRGTNRRGAVLEWSDRIRLMALAFAMIVAFAIVVPVQLFLGNHLSSPP*
Ga0126383_123245162	3300010398	Tropical Forest Soil	IRHGVVLLVGLVILGSWFFSGRGTNRQGTVLGWSGGLRLMALTFAMMIAVVFALVIPVQTILSNHLSPVP*
Ga0126383_136008992	3300010398	Tropical Forest Soil	VICDHLLAFSEPVAVRIGHGVVLLVGSVILGGWFFSARGTNRRGSVLGWSGGIRLMALTFAMMIVAAFAIIVLAQFFLCKHLSPPL*
Ga0134122_121643862	3300010400	Terrestrial Soil	LLLVLIILGSWFFSRRGTNRLGAVLGWSGGIRLVALAFAMIIVVAFAIAMPVEVFLTNHLSPAP*
Ga0134121_109122891	3300010401	Terrestrial Soil	RIGHGVVLVVGLVLLGGWLFSGRGTKRQGTALGWPGGLRLMALMFAMMIAVVFAIAVPVEVFLSKHLPASP*
Ga0137389_103094771	3300012096	Vadose Zone Soil	MVVHVLDFRQPAAIRIGHAALLLLGLVILGSWFFSKRGTDRNGAVLGWRGGIRLTALAFAMMVVVAFAIVIPVQALVR*
Ga0157297_102135482	3300012914	Soil	LDTALPLLGLVIFGGWFFRGRGTNRRSAVLGWSDGIRLMALAFAIMIVVAFTIVLPVQVFLSNHLSPPP*
Ga0126375_110223162	3300012948	Tropical Forest Soil	VIFDHMLAFSEPVAIRIGHGMVLLVVLVIFGSWFFSRRGTNRRGTVLGWGRGIQLIALAFAVMAVVAFAIVIPAQFFLSKHLPSLP*
Ga0126375_121182431	3300012948	Tropical Forest Soil	MLAVVIFDHVLALGQPVAIRIGHVVVLLLGLLALGSWFFSHRSTTRGRTLLGWRGGIRLMALAFAMMIVVTFTIVIPVQVFLSKHLSSPP*
Ga0164300_102920602	3300012951	Soil	ILGGWFFSGRGTNRRGSLLGWSGGIRLIVLMFTMMVVVAFAIVLSVQVFLSNSFSAR*
Ga0164300_105767811	3300012951	Soil	SEPVAIRMGHGVVLLLILTILGGWFFRARGTNRLGAVLGWSGGIRLVALAFAMMIVVAFAIVIPAQVFLSKHLSPAP*
Ga0164303_102292533	3300012957	Soil	IFDHVLVFSQPVAIRIGHGVMLLLGLLIFGSWFFSGRGANRHGAVLGWSGGIRLMTLAFAMMIVVAFAIVIPVQVFLSNHLSTVP*
Ga0164301_102221541	3300012960	Soil	VIFDHMFVFSQPVAIRIGHGVMLLFGLLILGSWFFSGRGTSHRGAVLGWSGGIGLMALAFAMMIAAAFAIVLPVQFFLGNHLSTPP*
Ga0164301_108359412	3300012960	Soil	IIFEHLLVVSEPVAVRIGYGVVLLLGLVILGGWFFSRRGTHRLGAVLGWSGGIRLVALAFAMIIVVAFAIAMPVQVFLSNHLSPAP*
Ga0164302_102166153	3300012961	Soil	SFLFAGIMLVAVIFDHVLVFSQPVAIRIGHGVVLLLGLVILGGWFFRGRGTNRHGAVLGWSGGIRLMALAFAMMIAAAFRDRYSG*
Ga0126369_136995141	3300012971	Tropical Forest Soil	VAVRIGHGVVLLLGLVMLGSWFFSGHGTNRQGAVLGWSGGLRLMALTLAMMIAVVFAIAIPAQILLSNHLSPPP*
Ga0126369_137111651	3300012971	Tropical Forest Soil	LLGLVVLGGWFFSERGTNRRGAILGWAGGIRLVTLAFAMGVVAAFAIAVPVQIFLSNSFSAR*
Ga0164309_118747082	3300012984	Soil	SFLFAGIMLILVMFEHVLVFSEPMAIRIADGLVLLLVLIILGGWFFNRRGTNRHGAVLGWSGGIRLMALAFAMMIAAAFAIVIPVQVFLSNHLSPAP*
Ga0164308_101880753	3300012985	Soil	WKFSFLFAGIMLVAVIFDHVLVFSQPVAIRIGHGVMLMLGLLILGSWFFSGRGTSHRGAVLGWSGGIRLMALAFVMMIAAAFAIVLPVQFFLGNHLSTPP*
Ga0164307_101359783	3300012987	Soil	VMLLLGLLISGSWFFSGRGTSHRGAVLGWSGGIRLMALAFAMMIAAAFAIVLPVQVFLSNHLSPTP*
Ga0164307_109120462	3300012987	Soil	RYSVSWKFSFLFAGIMLVAVIFDHVLVFSQPVAIRIGHGVMLLLGLLIFGSWFFSGRGANRHGAVLGWSGGIRLMALAFAMMIAAAFRDRYSG*
Ga0164306_102981041	3300012988	Soil	SSFLFAGITLVLVILDHVLVCSEPVAIRMGHGVVLLVILTILGGWFFRGRGTKRLGAVLGWSGGIRLVALAFAMMIVVAFAIVIPAQVFLSKHLSPAP*
Ga0164306_116787291	3300012988	Soil	PVAKRIAYGVALLLVLIILCGWLFSGRGTNRRGAVLGWSGGIRLIALAFAMMITVAFAIVIPFQVFLSNHLSPPS*
Ga0164306_119252381	3300012988	Soil	VLVFSQPVAIRIGHGVMLLLGLLIFGSWFFSGRGANRHGAVLGWSGGIRLMTLAFAMMIVVAFAIVIPVQVFLSNHLSTAP*
Ga0164305_109582632	3300012989	Soil	MVVLVICDHVLVFSKPVAIRIGHGVVLLLILTILGGWFFRGRGTNRLGAVLGWSGRIRLVALAFAMMIVVAFAIVIPAQVFLSKHLSPAP*
Ga0157378_120751591	3300013297	Miscanthus Rhizosphere	GVVLVLGLIILGGSFFRGRGTNRRGAVLEWSDRIRLMALAFAMIVAFAIVVPVQLFLGNHLSSPP*
Ga0163162_104414551	3300013306	Switchgrass Rhizosphere	LVIVDHVLVVSQPVVIRIGHGVVLVLGLIILGGSFFRGRGTNRRGAVLEWSDRIRLMALAFAMIVAFAIVVPVQLFLGNHLSSPP*
Ga0163162_129394312	3300013306	Switchgrass Rhizosphere	MLVVVIFDHVLAFRESMAMRIVYSVVLLLGLVILGSWFFSGRGTNRRGTVLRWVGGMRLIGLAFAMLIVAAFAIVIPAQVFLSKHVSSAP*
Ga0157372_106650421	3300013307	Corn Rhizosphere	KSSFHFAGIMLVVVIFDHVLAFRESMAMRIVYSVVLLLGLVILGSWFFSGRGTNRRGTVLRWVGGMRLIGLAFAMLIVAAFAIVIPAQVFLSKHVSSAP*
Ga0157377_112675422	3300014745	Miscanthus Rhizosphere	VYSVVLLLGLVILGSWFFSGRGTNRRGTVLRWVGGMRLIGLAFAMLIVAAFAIVIPAQVFLSKHVSSAP*
Ga0132258_119328022	3300015371	Arabidopsis Rhizosphere	MCSFVFSQPVAIRIGHGVMLLLGLLIFGSWFFSGRGTSHRGAVLGWSGGIRLMALAFAMMIVAAFAIVIPIQILLSNHLSSAP*
Ga0132258_132533543	3300015371	Arabidopsis Rhizosphere	LIILGSWFFSRRGTNRLGAVLGWSGGIRLVALAFAMIIVVAFAIAMPVEVFLTNHLSPAP
Ga0132258_138170551	3300015371	Arabidopsis Rhizosphere	AGQIVFGSWFFSGRGMNRQGTILRWSGGLRSVALIFAMMFVLVFAIAMPVQVFLSNHFPPQP*
Ga0132256_1003657202	3300015372	Arabidopsis Rhizosphere	MMVAVIFHHVLLFSAPVAIRIGLGVVLLLGLVIVGGWFFSGRCANRQNAVLGWSGGIGLTALTFALMIAVAFAIAVPVQIFFTNSLSAR*
Ga0132255_1002527111	3300015374	Arabidopsis Rhizosphere	PVAMRIGHGVVLLLVLMILGGWFFSRRGTNRRGAVLGWSGGIRLIVLAFAMMIVVAFAIVIPVQVFLSNYLSTPP*
Ga0132255_1010002151	3300015374	Arabidopsis Rhizosphere	FSPSLCWSPSFLIMCSFVFSQPVAIRIGHGVMLLLGLLIFGSWFFSGRGTSHRGAVLGWSGGIRLMALAFAMMIVAAFAIVIPIQILLSNHLSSAP*
Ga0182036_113503792	3300016270	Soil	IGLVVLGGWFFSGRGTNRRGAVLGWSGGLRLMALTFAMMIAVVFAIVISTQVFLSKNLSPSP
Ga0182041_107936972	3300016294	Soil	MIGLVVLGGWFFSGRGTNRRGAVLGWSGGLRLMALTFAMMIAVAFAIVLPVQLFLKHLSTPP
Ga0182041_120755961	3300016294	Soil	HVLLFSAPVALRIGLGVVLLLGLVILGGWFFSGRGTNRDGSCLGWSGGIRLMALAFAMMIVVAFAIVMPIEFFLDKHLSPSP
Ga0182035_106546851	3300016341	Soil	GLVILGGWFFSGRGTNRDGSCLGWSGGIRLMALAFAMMIVVAFAIVMPIEFFLDKQLSPS
Ga0182032_103502671	3300016357	Soil	VLLLGLVILGGWFFSGRGTNRRGSLLGWSGGIRLMALTFAMMIMLAFAIVMPTQFFLDKHLSPSP
Ga0182040_114298131	3300016387	Soil	AVIVDHILVVSQPMAIRIGHGAVLLIGLVLLGSWFFSGRGRNRSGALLGWSGGLRLMALAFAMIIVVAFIIVVLVQIFLSKQLAPPP
Ga0182039_122392352	3300016422	Soil	RIGLGVILLLGLVILGGWFFSGRCANRQNAVLGWSGGIWLMALTFAMMIAVAFAIVLPVQLFLKHLSTPP
Ga0193713_11929521	3300019882	Soil	MLVAVIIDHVLALSQPVAIRIGRGVVVLIGLVILSGWFFSKRGTNRRGEVLGWSGGIRLMALAFAMMIVVAFAIVIPVQVFLSNHLSPPP
Ga0193709_10074771	3300021411	Soil	IGHGVVLLLVLIILGGWFFSRRGANRHGAVLGWSGGIWLMALAFAMMIVVAFAIVIPVQVFLSNHLSPPP
Ga0126371_103387613	3300021560	Tropical Forest Soil	MVALIADDVLVVSQPMAIRIGHGVTLLIGLVILGGWFFGDRGINRRSAVLGWSGGLGMMALAFAMMIVVVFAIVVPVQLFLGNQLSPSP
Ga0126371_109139282	3300021560	Tropical Forest Soil	GHGVVLLLGLVILGSWFFSRHGINRNGTILGWSGGIRLMVLTFAMIVVAFAILVPAQVFLSKHLSAPP
Ga0126371_109299533	3300021560	Tropical Forest Soil	MVALIADHVLVVSQPTAVRIGHGVPLLIGLVILSGWFFGDRGTNRRGTVLGWSGGLGMMALAFAMMIVVVFAIVVPVQLFL
Ga0247692_10665881	3300024279	Soil	LVFSQPVAIRIANGVVLLLGLVILGGWFFSRRGTNRSGAVLGWSGGLSLMALTIATMITVAFAIVIPVQVFLGNYLSTPP
Ga0207693_111006782	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	KKCFLFAGIMLSAVIFHHVLLFSAPAAIRIGLGVVLLLGLLILGAWFFSGRGTSRQGTVLGWSDGIRLMALMFAMMIAVAFAIVVPVQIFLNNRLSPPP
Ga0207428_109737821	3300027907	Populus Rhizosphere	ARSCDFGGWFFSGRGTNRQGTVLGWSDGLRLMALMFAMMIVVAFAIVVPVQIFLNNYLSPAP
Ga0075373_109730931	3300030945	Soil	KVSFLFAGIIMVAVIFHHVVLFSAPVALRIGLGMVLLLGLVILGGWFFSGRGTNRGGTVLGWPGGIRLMALAFAMMFVVAFAIVIPAQVFLSNHLSRSP
Ga0170819_164289521	3300031469	Forest Soil	YSVSWKASFLFAGIMLVLVIFEHLLVFSEPVAVRIGHGVVLLLVLIILGGWFFSRRGANRHGAVLGWSGGIRLMALAFAMMISVAFAIVLPVQIFLSNHLSSAP
Ga0310915_106968391	3300031573	Soil	GAVLLIGLVLLGSWFFSGRGRNRSGALLGWSGGLRLMALAFAMIIVVAFIIVVLVQIFLSKQLAPPP
Ga0306917_101035361	3300031719	Soil	VALRIGLGVALLLGLVILGGWFFSGRGTNRHGSRLGWSGGIRLMALAFAMMIAVAFAIVMPTQFFLDKHLSPSP
Ga0307469_111256441	3300031720	Hardwood Forest Soil	PLAIRIGHGVTLLLGLLILGSWFFSGRGTNRRGTVLGWSGGIRLMALAFAMMIVVAFAIAIPAQVFLSNRLSAPP
Ga0306918_113057212	3300031744	Soil	DHILVVSQPMAIRIGHGAVLLIGLVLLGSWFFSGRGRNRSGALLGWSGGLRLMALAFAMIIVVAFIIVVLVQIFLSKQLAPPP
Ga0306923_107349001	3300031910	Soil	LALRIGHNVVLLLGLVVLGGWFFNQRGTNHRGAILGWGGGMRLVTLAFAIAVVVAFAIVIRAQVFLSNSFSTR
Ga0306923_109901521	3300031910	Soil	LFSAPVALRIGLGVVLLLGLVILGGWFFSGRGTNRDGSCLGWSGGIRLMALAFAMMIVVAFAIVMPIEFFLDKHLSPSP
Ga0310912_103735071	3300031941	Soil	HNVVLLLGLVVLGGWFFNQRGTNHRGAILGWGGGMRLVALAFAIAVVVAFAIVVPVQGFLNQRLSTSP
Ga0307479_101143383	3300031962	Hardwood Forest Soil	MLGLLIFVHVVDVSQPVAIRIGHGVLLLLGFIILGGWFFSGRGTDRAGAVLRWGGGMRLIALAVGMMIVVAFAIVLPTQVFLSKHLPPPP
Ga0306922_100254931	3300032001	Soil	VSFLFADIIMVAVFFHHVVLFSAPVALRIGLGVVLLLGLVILGGWFFSGRGTNRHGSRLGWSGGIRLMALAFAMMIAVAFAIVMPTQFFLDKHLSPSP
Ga0306922_123868721	3300032001	Soil	MLMIGLVVLGGWFFSGRGTNRRGAVLGWSGGLRLMALTFAMMIAVVFAIVISTQVFLSKNLSPSP
Ga0306924_115485501	3300032076	Soil	MEVQFPFAGIMLVAVIFDHVLAFSEPVAIRIAHGVVLVVGLVILGSWFFSGRGTNRRGAVLGWFGGMRLMVLAFAMMVLAAFALVVPVQVFLSNHLSPSP
Ga0307471_1024876111	3300032180	Hardwood Forest Soil	FAGIMLVLVVFEHLLVFNEPVAIRIGHGVILLLVLIILGGWFFRGRGTNRHGAVLGWSGGIRLMALAFAMMIAAAFRDRYSG
Ga0306920_1031962321	3300032261	Soil	LRIGHNVVLLLGLVVLGGWFFSGRGTNRRGAILGWGGGMRLVTLAFAIAVVVAFAIVIRAQVFLSNSFSTR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101803

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences