Metagenome / Metatranscriptome Family F101812

Basic Information
Family ID	F101812
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	43 residues
Representative Sequence	LSERVHLGKAGVAGFGLLGLLWGATRRVGRVFAAGHKPQDA
Number of Associated Samples	97
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.16 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Most Common Taxonomy
Group	Unclassified (66.667 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.490 % of family members)
Environment Ontology (ENVO)	Unclassified (29.412 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.157 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 47.83% β-sheet: 0.00% Coil/Unstructured: 52.17%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00494	SQS_PSY	82.35
PF01593	Amino_oxidase	7.84
PF13450	NAD_binding_8	4.90
PF13249	SQHop_cyclase_N	3.92
PF00535	Glycos_transf_2	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1562	Phytoene/squalene synthetase	Lipid transport and metabolism [I]	82.35

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
All Organisms	root	All Organisms	33.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
cellular organisms	root	All Organisms → cellular organisms	33.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.35 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.51 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.67 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.92 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.92 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.92 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_106854010	Not Available	1338	Open in IMG/M
3300002917\|JGI25616J43925_10109284	All Organisms → cellular organisms → Bacteria → Proteobacteria	1135	Open in IMG/M
3300004156\|Ga0062589_102015942	Not Available	586	Open in IMG/M
3300004281\|Ga0066397_10106133	Not Available	595	Open in IMG/M
3300004479\|Ga0062595_101042828	Not Available	708	Open in IMG/M
3300005529\|Ga0070741_11182762	Not Available	646	Open in IMG/M
3300005530\|Ga0070679_101085851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	745	Open in IMG/M
3300005558\|Ga0066698_10235072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1261	Open in IMG/M
3300005568\|Ga0066703_10907726	Not Available	502	Open in IMG/M
3300005617\|Ga0068859_103102975	Not Available	506	Open in IMG/M
3300006038\|Ga0075365_10787047	Not Available	671	Open in IMG/M
3300006038\|Ga0075365_11346545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300006046\|Ga0066652_101627625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	592	Open in IMG/M
3300006047\|Ga0075024_100760779	Not Available	538	Open in IMG/M
3300006172\|Ga0075018_10040623	All Organisms → cellular organisms → Bacteria → Proteobacteria	1898	Open in IMG/M
3300006852\|Ga0075433_10742488	Not Available	859	Open in IMG/M
3300006853\|Ga0075420_100352910	All Organisms → cellular organisms → Bacteria → Proteobacteria	1273	Open in IMG/M
3300006904\|Ga0075424_100219958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2018	Open in IMG/M
3300009090\|Ga0099827_11921855	Not Available	515	Open in IMG/M
3300009156\|Ga0111538_10614244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1379	Open in IMG/M
3300010047\|Ga0126382_11267083	Not Available	664	Open in IMG/M
3300010361\|Ga0126378_10488418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1346	Open in IMG/M
3300010361\|Ga0126378_12959480	Not Available	542	Open in IMG/M
3300010366\|Ga0126379_12655173	Not Available	598	Open in IMG/M
3300010400\|Ga0134122_10486776	Not Available	1113	Open in IMG/M
3300010880\|Ga0126350_10810658	Not Available	535	Open in IMG/M
3300011418\|Ga0153954_1001720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	10791	Open in IMG/M
3300012203\|Ga0137399_11148143	Not Available	654	Open in IMG/M
3300012208\|Ga0137376_10540600	Not Available	1010	Open in IMG/M
3300012930\|Ga0137407_11610627	Not Available	618	Open in IMG/M
3300012948\|Ga0126375_10425102	Not Available	968	Open in IMG/M
3300012971\|Ga0126369_10253120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1734	Open in IMG/M
3300012984\|Ga0164309_10674061	Not Available	817	Open in IMG/M
3300012986\|Ga0164304_11079996	Not Available	641	Open in IMG/M
3300013306\|Ga0163162_13375104	Not Available	510	Open in IMG/M
3300015372\|Ga0132256_103140826	Not Available	555	Open in IMG/M
3300016270\|Ga0182036_10180229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1531	Open in IMG/M
3300016294\|Ga0182041_12006540	Not Available	539	Open in IMG/M
3300016387\|Ga0182040_11272426	Not Available	620	Open in IMG/M
3300016422\|Ga0182039_10045326	All Organisms → cellular organisms → Bacteria → Proteobacteria	2954	Open in IMG/M
3300018081\|Ga0184625_10084246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1629	Open in IMG/M
3300018081\|Ga0184625_10271422	Not Available	888	Open in IMG/M
3300018468\|Ga0066662_10782245	Not Available	923	Open in IMG/M
3300019361\|Ga0173482_10057217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1290	Open in IMG/M
3300019889\|Ga0193743_1047453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1889	Open in IMG/M
3300020000\|Ga0193692_1050880	Not Available	940	Open in IMG/M
3300021344\|Ga0193719_10016444	Not Available	3135	Open in IMG/M
3300025925\|Ga0207650_10162756	All Organisms → cellular organisms → Bacteria → Proteobacteria	1769	Open in IMG/M
3300025928\|Ga0207700_10412941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1184	Open in IMG/M
3300025944\|Ga0207661_11872876	Not Available	545	Open in IMG/M
3300026326\|Ga0209801_1372793	Not Available	503	Open in IMG/M
3300026334\|Ga0209377_1054178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1780	Open in IMG/M
3300026360\|Ga0257173_1059427	Not Available	552	Open in IMG/M
3300026514\|Ga0257168_1146956	Not Available	525	Open in IMG/M
3300026555\|Ga0179593_1017163	Not Available	2828	Open in IMG/M
3300027546\|Ga0208984_1048535	Not Available	904	Open in IMG/M
3300027646\|Ga0209466_1124899	Not Available	523	Open in IMG/M
3300027654\|Ga0209799_1073922	Not Available	767	Open in IMG/M
3300027703\|Ga0207862_1114305	Not Available	811	Open in IMG/M
3300027812\|Ga0209656_10458291	Not Available	563	Open in IMG/M
3300027824\|Ga0209040_10202046	Not Available	1030	Open in IMG/M
3300027873\|Ga0209814_10371152	Not Available	627	Open in IMG/M
3300027880\|Ga0209481_10174262	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1068	Open in IMG/M
3300027907\|Ga0207428_10760423	Not Available	690	Open in IMG/M
3300028778\|Ga0307288_10447168	Not Available	530	Open in IMG/M
3300028790\|Ga0307283_10021455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1365	Open in IMG/M
3300028791\|Ga0307290_10159058	Not Available	827	Open in IMG/M
3300028802\|Ga0307503_10025976	All Organisms → cellular organisms → Bacteria → Proteobacteria	1998	Open in IMG/M
3300028802\|Ga0307503_10831275	Not Available	529	Open in IMG/M
3300028807\|Ga0307305_10179021	Not Available	977	Open in IMG/M
3300031543\|Ga0318516_10590320	Not Available	634	Open in IMG/M
3300031544\|Ga0318534_10196908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1163	Open in IMG/M
3300031545\|Ga0318541_10760872	Not Available	540	Open in IMG/M
3300031561\|Ga0318528_10284404	Not Available	887	Open in IMG/M
3300031572\|Ga0318515_10159565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1203	Open in IMG/M
3300031573\|Ga0310915_10057526	All Organisms → cellular organisms → Bacteria → Proteobacteria	2530	Open in IMG/M
3300031682\|Ga0318560_10310906	Not Available	849	Open in IMG/M
3300031713\|Ga0318496_10144054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1298	Open in IMG/M
3300031719\|Ga0306917_10085367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2228	Open in IMG/M
3300031723\|Ga0318493_10509590	Not Available	665	Open in IMG/M
3300031747\|Ga0318502_10449311	Not Available	769	Open in IMG/M
3300031751\|Ga0318494_10202354	Not Available	1131	Open in IMG/M
3300031764\|Ga0318535_10511179	Not Available	533	Open in IMG/M
3300031765\|Ga0318554_10754212	Not Available	545	Open in IMG/M
3300031795\|Ga0318557_10049533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1762	Open in IMG/M
3300031796\|Ga0318576_10216180	Not Available	902	Open in IMG/M
3300031798\|Ga0318523_10233868	Not Available	918	Open in IMG/M
3300031897\|Ga0318520_10205618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1162	Open in IMG/M
3300032039\|Ga0318559_10012051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3122	Open in IMG/M
3300032039\|Ga0318559_10192820	Not Available	935	Open in IMG/M
3300032044\|Ga0318558_10393052	Not Available	690	Open in IMG/M
3300032055\|Ga0318575_10728161	Not Available	501	Open in IMG/M
3300032066\|Ga0318514_10194138	All Organisms → cellular organisms → Bacteria → Proteobacteria	1062	Open in IMG/M
3300032090\|Ga0318518_10451128	Not Available	659	Open in IMG/M
3300032094\|Ga0318540_10312438	Not Available	758	Open in IMG/M
3300032163\|Ga0315281_11344965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	706	Open in IMG/M
3300032174\|Ga0307470_11759094	Not Available	523	Open in IMG/M
3300032205\|Ga0307472_100346115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1218	Open in IMG/M
3300032261\|Ga0306920_101991277	Not Available	814	Open in IMG/M
3300032397\|Ga0315287_12114777	Not Available	617	Open in IMG/M
3300032893\|Ga0335069_12574072	Not Available	525	Open in IMG/M
3300034819\|Ga0373958_0108771	Not Available	658	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.29%
Host-Associated	Host-Associated	14.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.45%
Plants	Host-Associated → Plants	13.73%
Aquatic	Environmental → Aquatic	7.84%
Fungi	Host-Associated → Fungi	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.80%
Freshwater	Environmental → Aquatic → Freshwater	3.92%
Sediment	Environmental → Aquatic → Sediment	3.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.96%
Roots	Host-Associated → Plants → Roots	1.96%
Mycelium	Host-Associated → Fungi → Mycelium	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.63%
Loam	Environmental → Terrestrial → Soil → Loam	7.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Lake	Environmental → Aquatic → Freshwater → Lake	1.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.96%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.49%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.96%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.98%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011418	Attine ant fungus gardens microbial communities from Florida, USA - TSFL038 MetaG	Host-Associated	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1068540104	3300000955	Soil	RERVHLGKAGVAGIAILGLISGLIHRAGRVLAPGRKPLDA*
JGI25616J43925_101092841	3300002917	Grasslands Soil	DPLSERVHLGKAGVAGFGVLGLLWGATRRVGRAFAAGHTTQDA*
Ga0062589_1020159422	3300004156	Soil	SERVHLGKAGVAGFGLLGLLWGATRRVGRVLAAGRKPQDA*
Ga0066397_101061332	3300004281	Tropical Forest Soil	ERVHLGKAGVAGFGLLGLLWGATRRVGRVFAAGHKPQDA*
Ga0062595_1010428282	3300004479	Soil	QTFAERLVAVLTRRDPLSQHVHLGKAGVAGFGLLGLLWGATRRVGRVFAVGHKPQDA*
Ga0070741_111827622	3300005529	Surface Soil	CERVHLGKAGFTGLGLVGLLWGAACRVGRVFAATPKPQGT*
Ga0070679_1010858512	3300005530	Corn Rhizosphere	RRDPLSERVHLGKAGVAGFGLLGLLWGATRRVGRVLAAGRKPQDA*
Ga0066698_102350723	3300005558	Soil	VRLLSRRDPLSERVHLGKAGVAGFGMLGLLWGATRRVGRAFAAGHTTQDA*
Ga0066703_109077261	3300005568	Soil	HLGKAGVAGFGMLGLLWGATRRVGRAFAAGHTTQDA*
Ga0068859_1031029752	3300005617	Switchgrass Rhizosphere	SERVHLGKAGVAGFGLLGLLWGATRRVGRVLAAGHKPQDA*
Ga0075365_107870472	3300006038	Populus Endosphere	QRVHLGKAGVAGFGLVGLIWGATRRAGRLLAAGHRPQDA*
Ga0075365_113465451	3300006038	Populus Endosphere	TRRDPLSERVHLGKAGVAGFGLLGLLWGATRRVGRVLAAGHKPQDA*
Ga0066652_1016276251	3300006046	Soil	TFAERLVGVLSRRDPLSQRVHLGKAGVVGFGLLGLLWGASRRVGRRFAAGHKPQDP*
Ga0075024_1007607791	3300006047	Watersheds	SKAAVAGLGLVGLIWGATGRIGRAFAATPKPQGT*
Ga0075018_100406231	3300006172	Watersheds	ERVHLGKAGVAGFGVLGLLWGATRRVGRAFTAGHTTQDA*
Ga0075433_107424881	3300006852	Populus Rhizosphere	SERVHLGKAGVAGFGVLGLLWGATRRVGRVFAAGQKTQDA*
Ga0075420_1003529103	3300006853	Populus Rhizosphere	RLAAVLARRDPLSQRVHLGKAGVAGFGLVGLIWGATRRAGRLLAAGHRPQDA*
Ga0075424_1002199583	3300006904	Populus Rhizosphere	LGKAGVAGFGLLGLLWGTTRRVGRVFAVGHKPQDA*
Ga0099827_119218551	3300009090	Vadose Zone Soil	RDPLSERVHLGKAGVAGFGLLGLLWGATRRVGRVRAAGRKPQDA*
Ga0111538_106142441	3300009156	Populus Rhizosphere	LSERVHLGKAGTAGLGLVGLIRGATSRVGRVFSATPKPQGT*
Ga0126382_112670832	3300010047	Tropical Forest Soil	QRDPLSERVHLGKAGVAGFGVLGLLWGATRRVGRVFAPGHKPQDA*
Ga0126378_104884183	3300010361	Tropical Forest Soil	SRRDPLSERVHLGKAGVAGFGLLGLLWGATRRVGRVRAAGRKP*
Ga0126378_129594802	3300010361	Tropical Forest Soil	SRRDPLSERVHLGKAGVAGFGLLGLLWGATRRVGRVRAAGHKPQDA*
Ga0126379_126551732	3300010366	Tropical Forest Soil	DPLSERVHLGKAGVAGFGVLGLLWGATRRVGRVFAPGHKPQDA*
Ga0134122_104867763	3300010400	Terrestrial Soil	LSERVHLGKAGVAGFGLLGLLWGATRRVGRVLAAGHKPQDA*
Ga0126350_108106581	3300010880	Boreal Forest Soil	VHLGKAGVAALGLLGVVKGAANRVGRAFAGAHKPQDA*
Ga0153954_10017208	3300011418	Attine Ant Fungus Gardens	AERLVDLLSRRDPLSERVHLDKAAVAGFGLLGLGWGATHRVGRIFTVDHKPQDA*
Ga0137399_111481431	3300012203	Vadose Zone Soil	HLGKAGVAGFGVLGLLWGATRRVGRAFAAGHTTQDA*
Ga0137376_105406001	3300012208	Vadose Zone Soil	RVHLGKAGVAGFGVLGLLLGATRRVGRVFAAGQKTQDA*
Ga0137407_116106271	3300012930	Vadose Zone Soil	PLSQRVHLGKAGVASFGLLGLISGAIRRVGRVLPAGHKPQDA*
Ga0126375_104251022	3300012948	Tropical Forest Soil	RDPLSERVHLRKAGVAGVAMMGLLNGVLGRVGRAFTASQKPRNA*
Ga0126369_102531203	3300012971	Tropical Forest Soil	LGKAGVAGFGILGLLWGASRRVGRVFAAGHRPQDA*
Ga0164309_106740611	3300012984	Soil	QTFAERLVAVLTRRDPLSQHVHLGKAGVAGFGLLGLLWGATRRVGRLFAVGHKPQDA*
Ga0164304_110799961	3300012986	Soil	LVRLLAQRDPLSERVHLGKAGVEGFGVLGLLWGATRRVGRLFAAGQKTQDA*
Ga0163162_133751041	3300013306	Switchgrass Rhizosphere	RDPLSERVHLGKAGVAGFGLLGLLWGATRRVGRVLAAGHKPQDA*
Ga0132256_1031408262	3300015372	Arabidopsis Rhizosphere	DPLSERVHLGKAGVAGFGVLGLLWGATRRVGRVFAAGQKTQDA*
Ga0182036_101802293	3300016270	Soil	RLLTQRDPLSERVHLGKAGVAGFGVLGLLWGATRRVGRVFAPGHKPQDA
Ga0182041_120065402	3300016294	Soil	VHLGKAGVAGFGVLGLLWGATRRVGRVFAAGQKTQDA
Ga0182040_112724261	3300016387	Soil	VHLGKAGVAGFGVLGLLWGATRRVGRVFAPGRKPQDA
Ga0182039_100453264	3300016422	Soil	CARVHLGAAGVAGFGLLGVVSAAIGRAGRLFSGGP
Ga0184625_100842461	3300018081	Groundwater Sediment	FAERLVALLKPRDPLSQRVHLGKAGVAGFGVLGLLWGATRRVGRVFAVGHKPQDA
Ga0184625_102714222	3300018081	Groundwater Sediment	PLSERVHLGKAGVAGFGLLGLLWGATRRVGRVLAAGHKPQDA
Ga0066662_107822451	3300018468	Grasslands Soil	LSRRDQLSERVHLGKAGVAGFGIVGLLWGAGRRVGRVFAAGPRPQDA
Ga0173482_100572171	3300019361	Soil	VAVLTRRDPLSQHVHLGKAGVAGFGLLGLLWGATRRVGRVFAVGHKPQDA
Ga0193743_10474531	3300019889	Soil	CRDPLSERVHLGKAGVAGFGLLGLLWGATRRVGRVLAAGHKPQDA
Ga0193692_10508802	3300020000	Soil	HRDPLSQRVHLGKAGVAGFGVLGLLWGATRRVGRVFAVGHKPQDA
Ga0193719_100164441	3300021344	Soil	KHRDPLSQRVHLGKAGVAGFGVLGLLWGATRRVGRVFAVGHKPQDA
Ga0207650_101627563	3300025925	Switchgrass Rhizosphere	RVHLGKAGVAGFGLLGLLWGATRRVGRVLAAGHKPQDA
Ga0207700_104129413	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	RVHLGKAGVAGFGVLGLLWGATRRVGRVFAPGHKPQDA
Ga0207661_118728761	3300025944	Corn Rhizosphere	RDPLSQHVHLGKAGVAGFGLLGLLWGTTRRVGRVFAVGHKPQDA
Ga0209801_13727931	3300026326	Soil	LLSRHDPLSERVHLGKAGVAGFGMLGLLWGATRRVGRAFAAGHTTQDA
Ga0209377_10541783	3300026334	Soil	LLAQRDPLSERVHLGKAGVAGFGVLGLLWGATRRVGRVFAPGHKPQDA
Ga0257173_10594272	3300026360	Soil	SRRDPLSERVHLGKAGVAGFGVLGLLWGATRRVGRAFAAGHTTQDA
Ga0257168_11469562	3300026514	Soil	SERVHLGKAGVAGFGVLGLLWGAIRRVGRVFAAGQKTQDA
Ga0179593_10171631	3300026555	Vadose Zone Soil	LNERVHLGKAGVAGFGVLGLLWGATRRVGRAFAAGHTTQDA
Ga0208984_10485351	3300027546	Forest Soil	GRRDPLSERVHLGKAGVAGFGLLGLLWGASRRVGRVFAAGHKPQDA
Ga0209466_11248992	3300027646	Tropical Forest Soil	LSERVHLGKAGVAGFGLLGLLWGATRRVGRVFAAGHKPQDA
Ga0209799_10739222	3300027654	Tropical Forest Soil	PLSERVHLGKAGVAGFGVLGLLWGATRRVGRVFAPGHKPQDA
Ga0207862_11143052	3300027703	Tropical Forest Soil	DPLCARVHLGKAGVAGFGVLGVLSGAIRRAGRLFPAGHEA
Ga0209656_104582911	3300027812	Bog Forest Soil	LVGLLSRRDPLRERVHLGKAGVAGFGVLGLLSGAIRRVGRLLPAGHKPQDA
Ga0209040_102020463	3300027824	Bog Forest Soil	LGKAGVAGFGVLGLLSGAIRRVGRLLPAGHKPQDA
Ga0209814_103711522	3300027873	Populus Rhizosphere	VLARRDPLSQRVHLGKAGVAGFGLVGLIWGATRRAGRLLAAGHRPQDA
Ga0209481_101742623	3300027880	Populus Rhizosphere	PLSERVHLGKAGVAGFGLVGLLWGASRRVGRIFAASHKPQDA
Ga0207428_107604232	3300027907	Populus Rhizosphere	VRLLSRRDPLSERVHLGKAGVAGFGILGLLWGASRRVGRVFTAGHRPQDA
Ga0307288_104471681	3300028778	Soil	PLSERVHLGKAGVAGFGILGLLWGASRRVGRVFTAGHRPQDA
Ga0307283_100214553	3300028790	Soil	LLKHRDPLSQRVHLGKAGVAGFGVLGLLWGATRRVGRVFAVGHKPQDA
Ga0307290_101590582	3300028791	Soil	LSQRVHLGKAGVAGFGVLGLLWGATRRVGRVFAVGHKPQDA
Ga0307503_100259761	3300028802	Soil	LSERVHLGKAGVAGFGLLGLLWGATRRVGRVLAAGRKPQDA
Ga0307503_108312751	3300028802	Soil	ERLTGLLSRRDPLSQCVHLGKAGVAGFGLLGLLWGATRRVGRVFAAGHKPQDA
Ga0307305_101790211	3300028807	Soil	LGKAGVAGFGLLGLLWGASRRVGRVFAAGHKPQDA
Ga0318516_105903201	3300031543	Soil	ERVHLGKAGVAGFGVLGLLWGATRRVGRVFAPGRKPQDA
Ga0318534_101969083	3300031544	Soil	SERVHLGKAGVAGFGVLGLLWGATRRVGRVFAPGRKPQDA
Ga0318541_107608722	3300031545	Soil	AQRDPLSERVHLGKAGVAGFGVLGLLWGATRRVGRVFAPGRKPQDA
Ga0318528_102844042	3300031561	Soil	RVHLGKAGVAGFGVLGLLWGATRRVGRVFAAGQKTQDA
Ga0318515_101595651	3300031572	Soil	LLAQRDPLSERVHLGKAGVAGFGVLSLLWGATRRVGRVFAPGRKPQDA
Ga0310915_100575264	3300031573	Soil	QRDPLSERVHLGKAGVAGFGVLGLLWGATRRVGRVFAAGQKTQDA
Ga0318560_103109061	3300031682	Soil	LGKAGVAGFGVLGLLWGATRRVGRVFAAGQKTQDA
Ga0318496_101440541	3300031713	Soil	QRDPLSERVHLGKAGVAGFGVLGLLWGATRRVGRVFAPGRKPQDA
Ga0306917_100853671	3300031719	Soil	PLSERVHLGKAGVAGFGVLGLLWGATRRVGRVFAAGQKTQDA
Ga0318493_105095901	3300031723	Soil	VHLDKAGVAGFGVLGLLWGATRRVGRVFAAGQKTQDA
Ga0318502_104493111	3300031747	Soil	PLSERVHLGKAGVAGFGVLGLLWGATRRVGRVFAPGRKPQDA
Ga0318494_102023541	3300031751	Soil	IGLLRSRDPLSQRVHLGTAGVAGFGLLGLISGVTRRIGRVFAAGHEPQDA
Ga0318535_105111791	3300031764	Soil	RVHLGKAGVAGFGVLGLLWGATRRVGRVFAPGRKPQDA
Ga0318554_107542121	3300031765	Soil	LARRDPLCERVHLGKAGVAGFGLLGLLWGASRRVGRVFAVGHKPQDA
Ga0318557_100495331	3300031795	Soil	HLGKAGVAGFGVHGLLWGATRRVGRVFAAGQKTQDA
Ga0318576_102161802	3300031796	Soil	RRDPLSERVHLDKAGVAGFGVLGLFWGATRRVGRVFAAGQKTQDA
Ga0318523_102338682	3300031798	Soil	VRLLTQRDPLSERVHLGKAGVAGFGVLGLLWGATRRVGRVFAAGQKTQDA
Ga0318520_102056183	3300031897	Soil	HLGTAGVAGFGLLGLISGVTRRIGRVFAAGHEPQDA
Ga0318559_100120511	3300032039	Soil	VRLLAQRDPLSERVHLGKAGVAGFGVLGRLWGATRRVGRVFAPGRKPQDA
Ga0318559_101928201	3300032039	Soil	LVRLLTRRDPLSERVHLDKAGVAGFGVLGLFWGATRRVGRVFAAGQKTQDA
Ga0318558_103930522	3300032044	Soil	QRVHLGTAGVAGFGLLGLISGVTRRIGRVFAAGHEPQDA
Ga0318575_107281611	3300032055	Soil	DPLSERVHLGKLGVAGFGLAGLLSGAFRRLGRRIAPAGRKPQDA
Ga0318514_101941381	3300032066	Soil	HLGKAGVAGFGVLGLLWGATRRVGRVFAPGRKPQDA
Ga0318518_104511282	3300032090	Soil	LLGRRDPLSERVHLGKAGVASFGLLGLLSGAFRRVGRLLPTGHKPQDA
Ga0318540_103124382	3300032094	Soil	HLGKAGVAGFGVLGLLWGATRRVGRVFAAGQKTQDA
Ga0315281_113449652	3300032163	Sediment	MQTLAERLVALLRRRDPLCERVHFGKAGVAGYGLLGLLWGAIRRVGRVPAGREPQGA
Ga0307470_117590941	3300032174	Hardwood Forest Soil	VHLGKAGVAGFGLLGLLWGATRRVGRVFAAGHKPQDA
Ga0307472_1003461151	3300032205	Hardwood Forest Soil	RRDPLSQRVHLGKVGVAGFGLLGLLWGATRRVGRLFAAGHKPQDA
Ga0306920_1019912771	3300032261	Soil	ALLGRRDPLSERVHLGKAGVASFGLLGLLSGAFRRVGRLLPTGHKPQDA
Ga0315287_121147771	3300032397	Sediment	SMLQHRDPLSERVHLGKAGTAGLGLVGLIRGGISRIGRIVSPAPKPQGT
Ga0335069_125740722	3300032893	Soil	DPLCERVHLGKAGAAGLGLVGLIWGATCRVGRAFAATPRPQGT
Ga0373958_0108771_3_113	3300034819	Rhizosphere Soil	HLGKAGVAGFGLLGLLWGATRRVGRVLAAGHKPQDA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101812

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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