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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F101941 |
| Family Type | Metagenome |
| Number of Sequences | 102 |
| Average Sequence Length | 51 residues |
| Representative Sequence | YDLFVATDGCYTATVSGDSLGGPTLKTSDGRDVRNLLYTFEGCFDTT |
| Number of Associated Samples | 87 |
| Number of Associated Scaffolds | 102 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 81 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.57 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (19.608 % of family members) |
| Environment Ontology (ENVO) | Unclassified (35.294 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (47.059 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 4.00% β-sheet: 32.00% Coil/Unstructured: 64.00% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.57 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 102 Family Scaffolds |
|---|---|---|
| PF10282 | Lactonase | 2.94 |
| PF02541 | Ppx-GppA | 1.96 |
| PF13360 | PQQ_2 | 1.96 |
| PF00593 | TonB_dep_Rec | 1.96 |
| PF00202 | Aminotran_3 | 1.96 |
| PF04185 | Phosphoesterase | 1.96 |
| PF00719 | Pyrophosphatase | 0.98 |
| PF04338 | DUF481 | 0.98 |
| PF00534 | Glycos_transf_1 | 0.98 |
| PF01743 | PolyA_pol | 0.98 |
| PF13620 | CarboxypepD_reg | 0.98 |
| PF07715 | Plug | 0.98 |
| PF06537 | DHOR | 0.98 |
| PF13449 | Phytase-like | 0.98 |
| PF07731 | Cu-oxidase_2 | 0.98 |
| PF13304 | AAA_21 | 0.98 |
| PF01148 | CTP_transf_1 | 0.98 |
| PF10387 | DUF2442 | 0.98 |
| PF05787 | DUF839 | 0.98 |
| PF13505 | OMP_b-brl | 0.98 |
| PF01370 | Epimerase | 0.98 |
| PF09587 | PGA_cap | 0.98 |
| PF03186 | CobD_Cbib | 0.98 |
| COG ID | Name | Functional Category | % Frequency in 102 Family Scaffolds |
|---|---|---|---|
| COG0248 | Exopolyphosphatase/pppGpp-phosphohydrolase | Signal transduction mechanisms [T] | 3.92 |
| COG3511 | Phospholipase C | Cell wall/membrane/envelope biogenesis [M] | 1.96 |
| COG0221 | Inorganic pyrophosphatase | Energy production and conversion [C] | 0.98 |
| COG0617 | tRNA nucleotidyltransferase/poly(A) polymerase | Translation, ribosomal structure and biogenesis [J] | 0.98 |
| COG1270 | Cobalamin biosynthesis protein CobD/CbiB | Coenzyme transport and metabolism [H] | 0.98 |
| COG2132 | Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) | Cell cycle control, cell division, chromosome partitioning [D] | 0.98 |
| COG3137 | Putative salt-induced outer membrane protein YdiY | Cell wall/membrane/envelope biogenesis [M] | 0.98 |
| COG3211 | Secreted phosphatase, PhoX family | General function prediction only [R] | 0.98 |
| COG3488 | Uncharacterized conserved protein with two CxxC motifs, DUF1111 family | General function prediction only [R] | 0.98 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
|---|
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| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 19.61% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 6.86% |
| Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 5.88% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 5.88% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 5.88% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 4.90% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 4.90% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 3.92% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 3.92% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 2.94% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 2.94% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 2.94% |
| Populus Endosphere | Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere | 2.94% |
| Polar Desert Sand | Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand | 1.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.96% |
| Sediment | Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment | 1.96% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere | 1.96% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.96% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.96% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.96% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 1.96% |
| Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.98% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.98% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 0.98% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere | 0.98% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.98% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.98% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.98% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.98% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000364 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300005294 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil | Environmental | Open in IMG/M |
| 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Host-Associated | Open in IMG/M |
| 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005438 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG | Environmental | Open in IMG/M |
| 3300005440 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG | Environmental | Open in IMG/M |
| 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Environmental | Open in IMG/M |
| 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Environmental | Open in IMG/M |
| 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Host-Associated | Open in IMG/M |
| 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
| 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Environmental | Open in IMG/M |
| 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Host-Associated | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Host-Associated | Open in IMG/M |
| 3300006038 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Host-Associated | Open in IMG/M |
| 3300006049 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 | Host-Associated | Open in IMG/M |
| 3300006163 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG | Environmental | Open in IMG/M |
| 3300006177 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 | Host-Associated | Open in IMG/M |
| 3300006178 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 | Host-Associated | Open in IMG/M |
| 3300006845 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 | Host-Associated | Open in IMG/M |
| 3300006904 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 | Host-Associated | Open in IMG/M |
| 3300007004 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost | Environmental | Open in IMG/M |
| 3300007076 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Host-Associated | Open in IMG/M |
| 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009094 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009162 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 | Host-Associated | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009609 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 | Environmental | Open in IMG/M |
| 3300009792 | Tropical forest soil microbial communities from Panama - MetaG Plot_12 | Environmental | Open in IMG/M |
| 3300010043 | Tropical forest soil microbial communities from Panama - MetaG Plot_26 | Environmental | Open in IMG/M |
| 3300010046 | Tropical forest soil microbial communities from Panama - MetaG Plot_36 | Environmental | Open in IMG/M |
| 3300010047 | Tropical forest soil microbial communities from Panama - MetaG Plot_30 | Environmental | Open in IMG/M |
| 3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
| 3300010360 | Tropical forest soil microbial communities from Panama - MetaG Plot_6 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
| 3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
| 3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
| 3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
| 3300012092 | Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ445A (23.06) | Environmental | Open in IMG/M |
| 3300012173 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2 | Environmental | Open in IMG/M |
| 3300012228 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2 | Environmental | Open in IMG/M |
| 3300012232 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2 | Environmental | Open in IMG/M |
| 3300012684 | Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06) | Environmental | Open in IMG/M |
| 3300012948 | Tropical forest soil microbial communities from Panama - MetaG Plot_14 | Environmental | Open in IMG/M |
| 3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014878 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10D | Environmental | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
| 3300018429 | Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T | Environmental | Open in IMG/M |
| 3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
| 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025930 | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) | Environmental | Open in IMG/M |
| 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025941 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027533 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes) | Environmental | Open in IMG/M |
| 3300028043 (restricted) | Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MG | Environmental | Open in IMG/M |
| 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300031562 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031820 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515 | Environmental | Open in IMG/M |
| 3300031858 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2 | Environmental | Open in IMG/M |
| 3300031890 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) | Environmental | Open in IMG/M |
| 3300031940 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2 | Environmental | Open in IMG/M |
| 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Host-Associated | Open in IMG/M |
| 3300032059 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27 | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| 3300034115 | Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17 | Environmental | Open in IMG/M |
| 3300034147 | Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| INPhiseqgaiiFebDRAFT_1046814543 | 3300000364 | Soil | GCYTATAEGEQLGGLMLKARDGRDVRNLLHAFEGCFDTI* |
| Ga0065705_107861371 | 3300005294 | Switchgrass Rhizosphere | TLRDTYELFVNTDGCYSATVSGESLGGPTLRTTDGRSVRNLLYAFEGCFDTT* |
| Ga0068869_1004285272 | 3300005334 | Miscanthus Rhizosphere | MVHSQPQFLRDTYDLSVATDGCYTATVVAAEGHLGGPILKASDGSDVRNLTYTFEGCFDTT* |
| Ga0070675_1012430002 | 3300005354 | Miscanthus Rhizosphere | RQPLGDSYELFVTTDGCYSATAATENLGGPTLKGKDGREVRNLLYAFEGCFDLT* |
| Ga0070671_1012807811 | 3300005355 | Switchgrass Rhizosphere | ATDGCYSATVEGNNLGGPTLKATDGRDVKNLLFTFEGCFDTT* |
| Ga0070667_1002596301 | 3300005367 | Switchgrass Rhizosphere | CTLVWQGPDRRTLRDTYDLVVATDGCFSATVAGENLGGPVLKTPDGRQVKNHLYAFEGCFDPT* |
| Ga0070667_1017951382 | 3300005367 | Switchgrass Rhizosphere | LAVTSDGCYTAMAAEDFFGGPVLTSRDGGDVRNLLYAFEGCFDTA* |
| Ga0070701_112960572 | 3300005438 | Corn, Switchgrass And Miscanthus Rhizosphere | TLRDTYDLFVATDGCFNATVAGENLGGPTLKTQDGRQVKNYLYAFDSCFDPT* |
| Ga0070705_1002235951 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | LAWLGPDRQSLRDTYDLFVGTDGCYTATVEGNNLGGPILKASDGRDVKNLLFTFEGCFDTT* |
| Ga0070700_1019442872 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | YDLLVTTDGCYTAMVDGPQLGGPTLKSADGREVRNLLYTFEGCFDTT* |
| Ga0070708_1017574612 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | RSVRDTYDLFVATDGCYVATVEGESLGGPTVKRADGRHVKNLLYVFEGCFDTT* |
| Ga0068867_1000399454 | 3300005459 | Miscanthus Rhizosphere | PDRRTLRDTYDLFVATDGCFNATVAGENLGGPTLKTQDGRQVKNYLYAFDSCFDPT* |
| Ga0070707_1003545911 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | DTYDLFVATDGCFTATVAGESLGGPILKASDGSDVKNLLYSFEGCFDTM* |
| Ga0070672_1020329492 | 3300005543 | Miscanthus Rhizosphere | LLVATDGCYAATVAGESLGGPTLKAPDGRQVRNLLYAFEGCFDTT* |
| Ga0070696_1019382761 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | RWLGPDRQTLRDTFDLFVTTDGCYTATAAGESLGGPTLEMSDGSKVRNLLYAFEGCFDPT |
| Ga0068861_1000789632 | 3300005719 | Switchgrass Rhizosphere | MVHSQPQFLRDKYDLSVATDGCYTATVVAAEGHLGGPILKASDGSDVRTLTYTFEGCFDTT* |
| Ga0066903_1014052232 | 3300005764 | Tropical Forest Soil | HDSFDLFVTPDGCYTATAEGEHFGGPMLRATDGTVVRNLLYVFEGCFDAM* |
| Ga0066903_1014636804 | 3300005764 | Tropical Forest Soil | WQGPDRQALRDTYELFVNTDGCYTATVAGESLGGPTLKATDGTTVKNLLYTFEGCFDVT* |
| Ga0066903_1062333882 | 3300005764 | Tropical Forest Soil | MVGTDGCFAANVSGESLGGPTLKARDGRTVRNLLYAFEGCFDTT* |
| Ga0068860_1005621492 | 3300005843 | Switchgrass Rhizosphere | GPDRRTLRDTYDLFVTTDGCYTATVAGEGLGGPTLKASDGAEVRNLLYAFEGCFDTT* |
| Ga0075365_111971261 | 3300006038 | Populus Endosphere | IWQGPDRRTLRDTYDLLVTTDGCYTATVSGESLGGPTLKASDGSFVRNLLYAFEGCFDTT |
| Ga0075417_105992261 | 3300006049 | Populus Rhizosphere | SLMWRGPDRRTMRNNYELFVTTDGCYAATAAGENVGGPMLKSEDGGEIRNLLYAFEGCFDTT* |
| Ga0070715_106079091 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | YDLVVATDGCFSATVGGENLGGPTLKTQDGRQVKNYLYSFESCFDPT* |
| Ga0075362_107256712 | 3300006177 | Populus Endosphere | ICTIQWRGPGQRPLRDVYDLFVMTDGCYTATVEGESLAKPVLTTKDGRDVRNLLYVFEGCFDTT* |
| Ga0075367_107803982 | 3300006178 | Populus Endosphere | ICTIQWRGPGQRPLRDVYDLFVATDGCYTATIEGESLAKPVLTTKDGRDVRNLLYVFEGCFDTT* |
| Ga0075421_1003948573 | 3300006845 | Populus Rhizosphere | TAEGEGLAGPMLKALDGRDVRNLLYAFEGCFDTM* |
| Ga0075424_1020366931 | 3300006904 | Populus Rhizosphere | VWQGPNRQTLRDTYDLFVATDGCYTATVAGESLGGPILRASDGSDVRNLLYSFEGCFDTL |
| Ga0079218_111089202 | 3300007004 | Agricultural Soil | YDLFVMTDGCYAATVEGESLAKPILTTKDGREVRNLLYVFEGCFDTT* |
| Ga0075435_1000644001 | 3300007076 | Populus Rhizosphere | RWFGPDRQPLRDTFDLIVTPDGCYTATAEGEQLGGVTLRSRDGRDVRNLLHTFEGCFDTI |
| Ga0105240_110532902 | 3300009093 | Corn Rhizosphere | MTDTYDLSVSTDGCYTATIEGEELGGATINASDGSDLRNLLYAFEGCFDPS* |
| Ga0111539_128585422 | 3300009094 | Populus Rhizosphere | YTATVEGESLARPMLTTKDGREVRNLLYVFEGCFDTT* |
| Ga0105243_108600591 | 3300009148 | Miscanthus Rhizosphere | DTYDLLVATDGCYAATVAGESLGGPTLKAPDGRQVRNLLYAFEGCFDTT* |
| Ga0075423_108933401 | 3300009162 | Populus Rhizosphere | TASGEAIGGPTLKTESGRDVRNLLYEFEGCFDTT* |
| Ga0105242_129615842 | 3300009176 | Miscanthus Rhizosphere | TLRDAYDLFVATDGCYTATVEGSNLGGPTLKASDGREVKNLLFTFEGCFDTT* |
| Ga0105248_108752792 | 3300009177 | Switchgrass Rhizosphere | MVHSQPQFLRDTYDLSVATDGCYTATVVAAEGHLGGPILKASDGSDVRTLTYTFEGCFDTT* |
| Ga0105347_10002268 | 3300009609 | Soil | MLLWRSPQRQTLSDTYDLFVATDGCYTATVSGDSLGGPTLKTSDGRDVRNLLYTFEGCFDTT* |
| Ga0126374_107663782 | 3300009792 | Tropical Forest Soil | CYTATVAGESLGGPTLKASDGRTVKNLLYTFDGCFDTT* |
| Ga0126380_104902241 | 3300010043 | Tropical Forest Soil | MLRDTYDLFVATDGCYTATAEEESLGGPMLKAPDGRDVKNLLYSFEGCFNTM* |
| Ga0126384_110524102 | 3300010046 | Tropical Forest Soil | WKGPDKQTLTDTYDLFVTADGCYTATVATENLGGPTLKARDGTDVRNLLYAFEGCFDTT* |
| Ga0126382_108848271 | 3300010047 | Tropical Forest Soil | LVWPGPNRQMLRDTYDLFVATDGCYVATAAGENLGGPTLIAPDGTEMTNLLYTFEGCFDTT* |
| Ga0126382_111726702 | 3300010047 | Tropical Forest Soil | MLRDSYELFVTTDGCYTATASSEGIGPPTLKTDSGREVRNLLYAFEGCFDTT* |
| Ga0126382_113313492 | 3300010047 | Tropical Forest Soil | CYTAAVDGDTLGGPVLRSEDGRSVKNLLYAFEGCFDTSP* |
| Ga0126382_114857582 | 3300010047 | Tropical Forest Soil | DGCYTATASGEAIGGPTLKTESGRDVRNLLYEFEGCFDPT* |
| Ga0126376_121903571 | 3300010359 | Tropical Forest Soil | RDTLDLSVTADGCYSATPEGEHLGGPTLKTSNGTDVRNLLYSFEGCFDTM* |
| Ga0126372_120859871 | 3300010360 | Tropical Forest Soil | RWLGPNREPVKDTFDLVVTADGCYTATVEGEQLGGLTLKASDGREVRNLLHTFEGCFDTM |
| Ga0126372_131831071 | 3300010360 | Tropical Forest Soil | TDGCYTATVEGDTLGGPTLRSRDGRDVRNLLYTFEGCFDTM* |
| Ga0126378_134588942 | 3300010361 | Tropical Forest Soil | YDLSVGTDGCYTATVSGAEADLGGPRIVATDGSNVRNLLYTFEGCFDTT* |
| Ga0126377_113765232 | 3300010362 | Tropical Forest Soil | ATDGCYTATVDGDTLGGPILTAADGRSVKNLLYAFEGCFDTSP* |
| Ga0126379_105909202 | 3300010366 | Tropical Forest Soil | VVTTDGCYTATAEGEQLGGPILMAGDGRAVRNLLRVFEGCFEI* |
| Ga0126379_122633452 | 3300010366 | Tropical Forest Soil | TASAEGEQLGAPTLTTRKGRAVRNLLHTFEGCFDTT* |
| Ga0126383_117517182 | 3300010398 | Tropical Forest Soil | GPNRKMLRDTYDLFVTTDGCYTATAEGESLGRQTLKASDGRDVRNLLYSFEGCFDTM* |
| Ga0126383_124089242 | 3300010398 | Tropical Forest Soil | CYTASVEGEQLGGLTLKSSDGREVKNLLHTFEGCFDAM* |
| Ga0126383_130122531 | 3300010398 | Tropical Forest Soil | LFVTTDGCYTATAAGESLGGPRLRLSDGTEVRNLLYAFEGCFDTT* |
| Ga0134127_134369072 | 3300010399 | Terrestrial Soil | WKGPERQSLRDNYDLFVTPDGCYTATAEGERLAGPMLKALDGRDVRNLLYAFEGCFDTM* |
| Ga0134122_111035721 | 3300010400 | Terrestrial Soil | LRDTYDLFVATDGCYTATVEGGKLGGPTILMPDGRDTRNLLFAFDGCFDTT* |
| Ga0134122_120266751 | 3300010400 | Terrestrial Soil | PDGQLLRDTYDLFVATDGCYTATVEGGKLGGPTLRLPDGEDTRNLLFAFDGCFDTT* |
| Ga0134123_115569822 | 3300010403 | Terrestrial Soil | PDRQHLRDAYDLFVATDGCYTATVEGNSLGGPTLKTPDGRDVRNLLFTFEGCFDTSG* |
| Ga0136621_10575523 | 3300012092 | Polar Desert Sand | RDVYDLFVTTDGCYTATVEGESLAKPVLTTKDGRDVRNLLYVFEGCFDTT* |
| Ga0137327_11272761 | 3300012173 | Soil | MLLWRSPQRQNLSDTYDLFVATDGCYTATVSGDSLGGPTLKTSDGRDVRNLLYTFEGCFDTT* |
| Ga0137459_11486281 | 3300012228 | Soil | PLRDVYDLFVTTDGCYTATVEGESLARPVLTTKDGRDVLNLLYVFEGCFDTT* |
| Ga0137435_10469973 | 3300012232 | Soil | YDLFVATDGCYTATVSGDSLGGPTLKTSDGRDVRNLLYTFEGCFDTT* |
| Ga0136614_102877172 | 3300012684 | Polar Desert Sand | MTDGCYTATVEGESLAKPVLTTKDGRDVRNLLYVFEGCFDTT* |
| Ga0126375_108220102 | 3300012948 | Tropical Forest Soil | MVRDSYELFVTADGCYTATASGEAIGGPTLKTESGRDVRNLLYEFEGCFDKD* |
| Ga0126369_114809042 | 3300012971 | Tropical Forest Soil | RDTFDVVVTTDGCYTATAEGDQLGGITLTARDGHAVKNLLHTFEGCFDTM* |
| Ga0126369_121924742 | 3300012971 | Tropical Forest Soil | CYTATVEGEQLGGLTLKASDGRDVRNLLHTFEGCFDTM* |
| Ga0157378_109380371 | 3300013297 | Miscanthus Rhizosphere | TDGCYTATVEGNNLGGPTLKTPDGRDVRNLLFTFEGCFDTSG* |
| Ga0163163_123085942 | 3300014325 | Switchgrass Rhizosphere | MVWQGPNRQALRDTYDLSVTTDGCYTAAAAGESLDGPTIRMPDGGDVENLLYTFEGCFDLM* |
| Ga0163163_133437192 | 3300014325 | Switchgrass Rhizosphere | RDTYDLFVATDGCFNATVSGEHLGGPTLRTQDGRQVKNYLYAFDGCFDPT* |
| Ga0180065_10267623 | 3300014878 | Soil | RQTLSDTYDLFVATDGCYTATVSGDSLGGPTLKTSDGRDVRNLLYTFEGCFDTT* |
| Ga0132258_110710713 | 3300015371 | Arabidopsis Rhizosphere | RSPDNQTINSTYDLSVTTDGCYTATVDGESLGGPTLKASDGSVVRNLVYTFEGCFDTT* |
| Ga0163161_117742831 | 3300017792 | Switchgrass Rhizosphere | RTLRDTYDLFVATDGCFNATVAGENLGGPTLKTQDGRQVKNYLYAFDSCFDPT |
| Ga0190272_116550241 | 3300018429 | Soil | VTTDGCYMASLAGESLGGPILKTKDGTNVRNLLYAFDGCFDTTT |
| Ga0210410_113704441 | 3300021479 | Soil | GPNHRRLVDSYELSVGTDACYTATVETNEALGGPTIPIGDGKEVKNLLYAFEGCFDSTE |
| Ga0207680_107909272 | 3300025903 | Switchgrass Rhizosphere | IWQSPDRRTLRDTYDLFVATDGCFNATVAGENLGGPTLKTQDGRQVKNYLYAFDSCFDPT |
| Ga0207695_106628672 | 3300025913 | Corn Rhizosphere | MTDTYDLSVSTDGCYTATIEGEELGGATINASDGSDLRNLLYAFEGCFDPS |
| Ga0207701_113426661 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | HRTLRDTYDLLVATDGCYAATVAGESLGGPTLKAPDGRQVRNLLYAFEGCFDTT |
| Ga0207644_107051471 | 3300025931 | Switchgrass Rhizosphere | ATDGCYSATVEGNNLGGPTLKATDGRDVKNLLFTFEGCFDTT |
| Ga0207706_102363601 | 3300025933 | Corn Rhizosphere | GCYSASASGEGLGGPVLSVRDGSKTRNLLYTFEGCFDTT |
| Ga0207711_115288991 | 3300025941 | Switchgrass Rhizosphere | MVHSQPQFLRDTYDLSVATDGCYTATVVAAEGHLGGPILKASDGSDVRTLTYTFEGCFDT |
| Ga0207677_119326461 | 3300026023 | Miscanthus Rhizosphere | MVHSQPQFLRDTYDLSVATDGCYTATVVAAEGHLGGPILKASDGSDVRNLTYTF |
| Ga0207648_101294094 | 3300026089 | Miscanthus Rhizosphere | PDRRTLRDTYDLFVATDGCFNATVAGENLGGPTLKTQDGRQVKNYLYAFDSCFDPT |
| Ga0207675_1003898772 | 3300026118 | Switchgrass Rhizosphere | MVHSQPQFLRDKYDLSVATDGCYTATVVAAEGHLGGPILKASDGSDVRTLTYTFEGCFDT |
| Ga0208185_100048011 | 3300027533 | Soil | MLLWRSPQRQTLSDTYDLFVATDGCYTATVSGDSLGGPTLKTSDGRDVRNLLYTFEGCFDTT |
| (restricted) Ga0233417_100964202 | 3300028043 | Sediment | FVAADGCYLATVEGESLGGPTLKAKDGRPVKNLLYAFEGCFDTT |
| Ga0268265_108952702 | 3300028380 | Switchgrass Rhizosphere | TEGCYTATAEGESLGGPMLKAPDGSSVRNLLYVFEGCFDTT |
| Ga0268264_108382741 | 3300028381 | Switchgrass Rhizosphere | VTTDGCYTATVAGEGLGGPTLKASDGAEVRNLLYAFEGCFDTT |
| Ga0268264_119311291 | 3300028381 | Switchgrass Rhizosphere | RTLRDTYDLGVATDGCFSATVAGENLGGPVLKTPDGRQVKNHLYAFEGCFDPT |
| Ga0310886_107747361 | 3300031562 | Soil | QSLRDTYDLFVTPDGCYSATAEGEGLAGPMLKALDGRDVRNLLYAFEGCFDTM |
| Ga0307469_121553032 | 3300031720 | Hardwood Forest Soil | DKQTLTDTYDLFVTTDGCYTATVATENLGGPTLKARDGTDVRNLLYAFEGCFDTT |
| Ga0307468_1011419241 | 3300031740 | Hardwood Forest Soil | RQMLRDTYDLFVATDGCYSATVAGESLGGPILEASDGSRVKNLLYAFEGCFDTL |
| Ga0307473_103642512 | 3300031820 | Hardwood Forest Soil | WQGPNRQFLRDTYDLFVATDGCYTATVAGESLGGPILRASDGSDVRNLLYSFEGCFDTL |
| Ga0310892_104184921 | 3300031858 | Soil | ERQSLRDTYDLFVTPDGCYSATAEGEGLAGPMLKALDGRDVRNLLYAFEGCFDTM |
| Ga0306925_104734042 | 3300031890 | Soil | PDRQTLRDTFDLVVTTDGCYTATAEGERLGGPMLTTRKGRAVRNLLHTFEGCFDTT |
| Ga0306925_117858661 | 3300031890 | Soil | TDGCYTATVEGEQLGGATLTARDGREVRNLLHTFEGCFDTM |
| Ga0310901_105730712 | 3300031940 | Soil | QWRGPGQRPLRDVYDLFVTTDGCYTATVEGESLARPVLTTKDGREVRNLLYVFEGCFDTSPHRTK |
| Ga0307411_117010492 | 3300032005 | Rhizosphere | DLFVTTDGCYTATVEGESLARPVLTTSDGREVRNLLYVFEGCFDTM |
| Ga0318533_103177051 | 3300032059 | Soil | TFDLVVTTDGCYTATAEGERLGGPMLTTRKGRAVRNLLHTFEGCFDTT |
| Ga0307470_107247351 | 3300032174 | Hardwood Forest Soil | TDGCYMASLAGESLGGPILKTKDGENVRNLLYAFDGCFDTTT |
| Ga0307471_1004757472 | 3300032180 | Hardwood Forest Soil | WQGPNRQMLRDTYDLFVATDGCYSATVAGESLGGPILEASDGSRVKNLLYAFEGCFDTL |
| Ga0306920_1012949552 | 3300032261 | Soil | YTATAEGEQFGGPTLTARSGRAVRNLLHTFEGCFDTT |
| Ga0364945_0032206_1273_1416 | 3300034115 | Sediment | YDVFVATNGCYTARVSGETLGGPTIKSPDGHAVKNLLYTFEGCFDTT |
| Ga0364925_0237977_1_123 | 3300034147 | Sediment | DGCYTATVEGESLARPVLTTKDGRDVRNLLYVFEGCFDTT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |