Metagenome / Metatranscriptome Family F102162

Basic Information
Family ID	F102162
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	71 residues
Representative Sequence	MRFYMLPAEQGKTTCINFDHVAYIQLGAQTIELHFIGVEAPMVITKSPTTLALVAKGMDLSDSSKDLVSTL
Number of Associated Samples	64
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Most Common Taxonomy
Group	Unclassified (99.020 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (32.353 % of family members)
Environment Ontology (ENVO)	Unclassified (47.059 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.980 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.19% β-sheet: 27.27% Coil/Unstructured: 53.54%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF07876	Dabb	32.35
PF13472	Lipase_GDSL_2	9.80
PF00903	Glyoxalase	3.92
PF16363	GDP_Man_Dehyd	2.94
PF13450	NAD_binding_8	1.96
PF01370	Epimerase	1.96
PF13426	PAS_9	1.96
PF13525	YfiO	1.96
PF00989	PAS	0.98
PF13432	TPR_16	0.98
PF14849	YidC_periplas	0.98
PF04191	PEMT	0.98
PF03567	Sulfotransfer_2	0.98
PF01408	GFO_IDH_MocA	0.98
PF00512	HisKA	0.98
PF00657	Lipase_GDSL	0.98
PF02597	ThiS	0.98
PF00326	Peptidase_S9	0.98
PF02381	MraZ	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	0.98
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	0.98
COG2001	MraZ, DNA-binding transcriptional regulator and inhibitor of RsmH methyltransferase activity	Translation, ribosomal structure and biogenesis [J]	0.98

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
All Organisms	root	All Organisms	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
cellular organisms	root	All Organisms → cellular organisms	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %

Scaffold	Taxonomy	Length	IMG/M Link
3300029911\|Ga0311361_10021471	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	11845	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.18%
Host-Associated	Host-Associated	8.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.37%
Aquatic	Environmental → Aquatic	9.80%
Plants	Host-Associated → Plants	8.82%

Habitat	Taxonomy	Distribution
Peat	Environmental → Terrestrial → Peat	51.96%
Soil	Environmental → Terrestrial → Soil	29.41%
Freshwater	Environmental → Aquatic → Freshwater	9.80%
Peat Moss	Host-Associated → Plants → Peat Moss	5.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	51.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	23.53%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.84%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	5.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	3.92%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.96%
Loam	Environmental → Terrestrial → Soil → Loam	1.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	51.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	21.57%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.84%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	5.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.94%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	1.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	32.35%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	17.65%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	10.78%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	5.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.92%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	3.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	3.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	1.96%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.96%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.98%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.98%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.98%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300019268	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027803	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712S3S	Environmental	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028745	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028762	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3	Environmental	Open in IMG/M
3300028779	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028909	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1	Environmental	Open in IMG/M
3300029908	II_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029953	II_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030011	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030506	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_1	Environmental	Open in IMG/M
3300030507	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032605	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18025_13	Environmental	Open in IMG/M
3300032722	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18027	Environmental	Open in IMG/M
3300033818	Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M	Environmental	Open in IMG/M
3300033888	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_10024280	2170459010	Grass Soil	MRFYILPTEEGRTTAINFDHVAHVTVAGPTIEIHFAGVELPMVVAKTPTTLSTISKGMDVSDSTKEQIANL
Ga0062389_1011310362	3300004092	Bog Forest Soil	MRFYLLPAEEGITTCINFEHVSYIRVGPKTIELYFEGVVAPMVVTKSPSTLSLVAKGMDLSDSSKDLVNTL*
Ga0062389_1037897991	3300004092	Bog Forest Soil	MRFYILPTEQGQTTCINFDHVAFIRLGPKTIELHFIGVEAPMVITKSPTTLALVAKGMDLSDASKDLVSTL*
Ga0062388_1025790242	3300004635	Bog Forest Soil	MRFYLLPAEGGITTCINFEHVSYIRVGPKTIELFFEGVEAPMVVTKSPSTLSLVAKGMDLSDASKDLVNTL*
Ga0068863_1022587112	3300005841	Switchgrass Rhizosphere	MRFYLLPIDQGETTCINFDHVAYIKVQPKTIELHFIGVEQPMSVAKTATTLALVAKGMDLSDASKDLVATL*
Ga0116229_100034273	3300009500	Host-Associated	MVSSFVHAAQMRFYMLPAEQGKTTCINFEHVAYIQLGAQTIELHFIGVEAPMVITKSPSTLSLVAKGMDLSEASKDLVNSL*
Ga0116229_100299324	3300009500	Host-Associated	MRFYMLPAEQGVTTCINFEHVAYIHLGAKTIELHFIGVEAPMVITKSPSTLSLVAKGMDLSDSSKDLVASL*
Ga0105859_11736002	3300009651	Permafrost Soil	PGQPLGSCQGVVLAAFFGMRFYILPIEQGTTTCINFDHVAYIRLGAQTIELHFIGVEAPMVITKSATTLALVAKGMDLSDSSKDLVNAL*
Ga0116227_101789791	3300009709	Host-Associated	MRFYLLPAEQGTTTCINFDHVAFIRLGAKTIELHFIGVEAPMVVAKTATTLSLVAKGMDLSDSSKDLVSTL*
Ga0116227_107122511	3300009709	Host-Associated	LFGCQRTCLGAFFEMRFYLLPKEQDQTVCINFDHVAFIRVGKETIEIHFIGVEAPMVIPKTPTTLSLVAKGMDLSDNSKDLVNAL*
Ga0181534_101138161	3300014168	Bog	MRFYMLPTEQGKTTCINFEHVAYIHLGAKTIELHFIGVEAPMVITKTATTLALVAKGMDLSDTSKDLVNTL*
Ga0181531_107658351	3300014169	Bog	MRFYMLPTEQGQTTCINFDHVAFIRLGPQTIELHFIGVEAPMVVTKSPTTLALVAKGMDLSDTSKDLVSTL*
Ga0181537_1000204218	3300014201	Bog	KTTCINFDHVAYIQLGAQTIEVHFIGVEAPMVITKTPTTLALVAKGMDLSDSSKDMVSTL
Ga0181537_100732254	3300014201	Bog	MRFYILPTDEGKTTCINFDHVAIVVITAATIELHFAGVEAPMVIKKTATTLSMIGKGMDISDTSKDMVSNL*
Ga0182018_100590983	3300014489	Palsa	MRFYILPTDEGKTTCINFDHVAIVVITGPSIELHFAGVEAPMVIKKTPTTLSMIGKGMDISDTSKDMVSNL*
Ga0182018_103392352	3300014489	Palsa	MRFYILPTDEGKTTCINFDHVAIVVITAASIELHFAGVEAPMVIKKTPTTLSMIGKGMDISDTSKDMVSNL*
Ga0182014_105072902	3300014491	Bog	MRFYMLPTEQGETICINFDHVAYIRLDAKSIELHFIGVEKPMVLAKSPATLALVAKGMDLSDSSKDLVGTL*
Ga0182013_104713402	3300014492	Bog	MRFYILPTEQGKTTCINFDHVAYIHLGAQTIELHFIGVETPMVITKSPTTLALVAKGMDLSDASKDMVGTL*
Ga0182016_106867572	3300014493	Bog	MRFYMLPAEQGKTTCINFDHVAYIHLGPQTIELHFIGVEAPMVITKSAVTLAMVAKGMDLSDSSKDLVNAL*
Ga0182015_103809983	3300014495	Palsa	MRFYILPTEQGQTTCINFDHVAFIRLGPQTIELHFIGVEAPMVVTKSPATLALVAKGMDLSDASKDLVITL*
Ga0182015_105121871	3300014495	Palsa	MRFYMLPAEQGKTTCINFDHVAYIHLDAKTIELHFIGVEAPMVITKSATTLSLVAKGMDLSDSSKDLVSSL*
Ga0182011_104722382	3300014496	Fen	MRFYILPTEQGETTCINFEHVAYIRLGAKTIELHFMGVEAPMVITKSATTLALVAKGMDLSDSSRDLVSTL*
Ga0182012_107786271	3300014499	Bog	YILPAEQGTTTCINFDHVAYILLGVKTIELHFIGVEAPMVITKSATTLALVAKGMDLSDTSKDLVSTL*
Ga0182024_1000628522	3300014501	Permafrost	MRFFLLPADQGKTTCINFDHVAYIQLGAQTIEVHFIGVEAPMVITKTPTTLALVAKGMDLSDSSKDMVSTL*
Ga0182024_108165292	3300014501	Permafrost	MRFYILPTEQGNTTCINFDHVAYIHLGTQSIALHFIGVEAPMLITKSAVTLAMVAKGMDLSDSSKDLVNAL*
Ga0182024_111461721	3300014501	Permafrost	QGITTCINFDHVAYIHLGAATIELHFIGVEAPMVIKKSATTLALVAKGMDLSDASKDLVGTL*
Ga0182030_100322863	3300014838	Bog	MRFYMLPTEQGKTTCINFDHVAYIHLSAQTIELHFIGVEEPMVITKSAATLSLVAKGMDLSDSSKDLVNSL*
Ga0182030_100709523	3300014838	Bog	MRFYILPTDQGQTTCINFDHVAYIHLGPKTIALHFIGVEAPMVITKSAATLALVAKGMDLSDSSKDLVGAL*
Ga0182030_102847052	3300014838	Bog	MRFYMLPAEQGKTTCINFEHVAYIQLGAQTIELHFIGVEAPMVITKSASTLSLVAKGMDLSDASKDLVNSL*
Ga0182030_105913392	3300014838	Bog	MRFYILPTEQGETTCINFEHVAYIRLGAKTIELHFMGVEAPMVITKSATTLALVAKGMDLSDSSKDMVSTL*
Ga0182030_106520242	3300014838	Bog	MRFYLLPTEQGKTTCVNFDHVAYIDVCLKTIEMHFIGVEAPMVVTKSPTTLALVAKGMDLSDSGKDLINTL*
Ga0182030_112972632	3300014838	Bog	ADQGKTTCINFDHVAYIHLGAQTIELHFIGVEEPMVITKSAATLSLVAKGMDLSDSSKDLVNSL*
Ga0182030_114748471	3300014838	Bog	MRFYILPAEQGETTCINFDHVAYIRLGAKTIELHFMGVEAPMVITKSPATLALVAKGMDLSDSSSDLVGTL*
Ga0181514_12612672	3300019268	Peatland	MRFYMLPTEQGKTTCINFEHVAYIHLGAKTIELHFIGVEAPMVITKTATTLALVAKGMDLSDTSKDLVNTL
Ga0182025_12928315	3300019786	Permafrost	MRFYILPTEEGQTNCINFDHVAFIRLGAKTIELHFIGVEAPMVVPKSATTLALVAKGMDLSDASKDLVGTL
Ga0193753_101846303	3300020034	Soil	MRFYLMPTEQGKTTCINFDHVAYIHVGAQAIELHFIGVEAPMVISKSPTTLAMISKGMDLSDSSKDLVSAL
Ga0193716_10307393	3300020061	Soil	MRFYMLPAEAGQTTCINFDHVAYIHLGAKTIALHFIGVEAPMVVTKTPTTLALVAKGMDLSDASKDLVSTL
Ga0207641_125427471	3300026088	Switchgrass Rhizosphere	MRFYLLPIDQGETTCINFDHVAYIKVQPKTIELHFIGVEQPMSVAKTATTLALVAKGMDLSDASKDLVATL
Ga0209420_11185371	3300027648	Forest Soil	MRFYMLPTDQGKTTCINFEHVAYIHLGAKTIELHFIGVEAPMVVTKSPTTLALVAKGMDLSDASKDLVNTL
Ga0209910_100308723	3300027803	Thawing Permafrost	NVASLRHVLGMRFYILPTEQGKTTCINFDHVAYIQLGAQTIELHFIGVEAPMVITKSPATLSMVAKGMDLSDTSKDLVNAL
Ga0209611_100033524	3300027860	Host-Associated	MVSSFVHAAQMRFYMLPAEQGKTTCINFEHVAYIQLGAQTIELHFIGVEAPMVITKSPSTLSLVAKGMDLSEASKDLVNSL
Ga0209611_100278644	3300027860	Host-Associated	MRFYMLPAEQGVTTCINFEHVAYIHLGAKTIELHFIGVEAPMVITKSPSTLSLVAKGMDLSDSSKDLVASL
Ga0209006_112491381	3300027908	Forest Soil	MRFYLLPTEQGQTTCINFDHVAFIRLGSQTIELHFIGVEAPMVITKSPTTLALVAKGMDLSDASKDLVSTL
Ga0265355_10247882	3300028036	Rhizosphere	MRFYMLPTEQGQTTCINFDHVAFIRLGPQTIELHFIGVEAPMVVTKSATTLALVAKGMDLSDSSKDLLSTL
Ga0302267_100383883	3300028745	Bog	MRFYLLPTEQGKTTCVNFDHVAYIDVCLKTIEMHFIGVEAPMVVTKSPTTLALVAKGMDLSDSGKDLINTL
Ga0302267_101824371	3300028745	Bog	GETTCINFDHVAYIRLGAKTIELHFMGVEAPMVITKSATTLALVAKGMDLSDSSRDLVGT
Ga0302156_103892301	3300028748	Bog	MRFYMLPTEQGQTTCINFEHVAYIHLGAKTIALHFIGVEAPMVITKTATTLALVAKGMDLSDSSKDLVSTL
Ga0302202_102694051	3300028762	Bog	MRFYLLPIDQGTTTCINFEHVAYIQLGPQTIELHFIGVEAPMVIKKTATTLSLVAKGMDLSDTSKDLV
Ga0302266_100509013	3300028779	Bog	DACSGMRFYLLPTEQGKTTCVNFDHVAYIDVCLKTIEMHFIGVEAPMVVTKSPTTLALVAKGMDLSDSGKDLINTL
Ga0302266_101021873	3300028779	Bog	MRFYLLPTEQGETTGINFDHVAYVRVGAKSIELHFIGVEKPMVLPKSAVTLSMIAKGMDLSDSSKDLVNAL
Ga0302266_103499722	3300028779	Bog	SSMRFYLLPIDQGTTTCINFEHVAYIQLGPQTIELHFIGVEAPMVIKKTATTLSLVAKGMDLSDTSKDLVNTL
Ga0302278_103400811	3300028866	Bog	MRFYLLPTEQGETTGINFDHVAYVRVGAKSIELHFIGVEKPMVLPKSAVTLSMIAKGMDLSDSSKDLVN
Ga0302200_103156942	3300028909	Bog	MLPTEQGQTTCINFEHVAYIHLGAKTIALHFIGVEAPMVITKTATTLALVAKGMDLSDSSKDLVSTL
Ga0311341_102695823	3300029908	Bog	LGAPLSMRFYLLPIDQGTTTCINFEHVAYIQLGPQTIELHFIGVEAPMVIKKTATTLSLVAKGMDLSDTSKDLVNTL
Ga0311369_104837162	3300029910	Palsa	MPCHQSLAANNLTAIVNCACLRHALGMRFYMLPSEQGKTTCINFDHVAYIHLAAQTIELHFIGVEAPMVVTKSPTTLALVAKGMDLSDSSKDLVSTL
Ga0311369_113741912	3300029910	Palsa	MRFYMLPAEAGKTTLINFDHVAFIDISGKAIDIHFIGVEAPMSVTKTATTLSLVAKGMDLSDNSKDLV
Ga0311361_1002147110	3300029911	Bog	MRFYILPAEQGETTCINFDHVAYIRLGAKTIELHFMGVEAPMVITKSATTLALVAKGMDLSDSSRDLVGTL
Ga0311361_106094002	3300029911	Bog	MRFYMLPADQGKTTCINFDHVAYVQLGAQTIELHFIGVEEPMVLTKSAVTLSLVAKGMDLSDSSKDLVNAL
Ga0311362_101575772	3300029913	Bog	MRFYMLPTEQGETTCINFEHVAYIRLDAKSIELHFIGVEKPMVVAKSPTTLALVAKGMDLSDTSKDLVSNSEMTASQLWKLV
Ga0311362_111043641	3300029913	Bog	MRFYLLPTDQGETTCINFDHVAYIRLRAKEIELHFIGVELPMVITKTPATLALVAKGMDLSDSSKDLVSTL
Ga0311359_100733484	3300029914	Bog	MRFYMLPADQGKTTCINFDHVAYIQLGAQTIELHFIGVEEPMVITKSAVTLSLVAKGMDLSDSSKDLVNTL
Ga0311359_101343093	3300029914	Bog	MRFYMLPTEQGETTCINFEHVAYIRLDAKSIELHFIGVEKPMVVAKSPTTLALVAKGMDLSDTSKDLVSTL
Ga0311359_109799641	3300029914	Bog	HAWEMRFYLLPADQGITTCINFDHVAYIRLGPQTIELHFIGVEAPMVVAKSATTLSLVAKGMDLSDSSKDLVGSL
Ga0311358_101858022	3300029915	Bog	MRFYLLPADQGITTCINFDHVAYIRLGPQTIELHFIGVEAPMVVAKSATTLSLVAKGMDLSDSSKDLVGSL
Ga0311358_103496591	3300029915	Bog	MRFYLLPADQGTTTCINFDHVAYIQLGAKTIELHFIGVEAPMIVPKTPTTLSLVAKGMDLSDSSKDLVASL
Ga0311328_103641113	3300029939	Bog	TEQGKTTCVNFDHVAYIDVCLKTIEMHFIGVEAPMVVTKSPTTLALVAKGMDLSDSGKDLINTL
Ga0311371_112580332	3300029951	Palsa	MRFYMLPSDQGKTTCINFEHVAYIHLGAKTIELHFIGVEAPMIITKSPTTLALVAKGMDLSDSSKDLVGTL
Ga0311346_102774281	3300029952	Bog	RSGLGMRFYILPTDQGKTTCINFDHVAVVVIEGGNIELHFAGVETPMVIKKTPTTLAMIGKGMDISDSSKDMVSAL
Ga0311346_110294472	3300029952	Bog	DQGKTTCINFDHVAYIQLGAQTIELHFIGVEEPMVITKSAVTLSLVAKGMDLSDSSKDLVNTL
Ga0311343_100618366	3300029953	Bog	MRFYILPTDQGKTTCINFDHVAVVVIEGGNIELHFAGVETPMVIKKTPTTLAMIGKGMDISDSSKDMVSAL
Ga0311339_111253232	3300029999	Palsa	MRFYMLPAEQGITTCINFDHVAYIHLGAKTIELHFMGVEAPMVITKTATTLALVAKGMDLSDASKDLVSTL
Ga0311339_119644422	3300029999	Palsa	MRFYMLPTDEGKTTCINFEHVAYIHLGAKTIELHFIGVEAPMIVTKSATTLALVAKGMDLSDSSKDLVSTL
Ga0302270_100814803	3300030011	Bog	TCINFDHVAYIRLGAKTIELHFMGVEAPMVITKSATTLALVAKGMDLSDSSRDLVGTL
Ga0311344_107636202	3300030020	Bog	MRFYLLPTEQGETTGINFDHVAYVRVGAKSIELHFIGVEKPMVLPKSAVTLSMIAKGMDLSDSSKDL
Ga0311344_112446231	3300030020	Bog	MRFFLLPTEQGETTCINFDHVAYIRLGAKSIELHFIGVEAPMVVAKSPTTLALVAKGMD
Ga0311370_115618771	3300030503	Palsa	MRFYMLPSEQGKTTCINFDHVAYIQLGAQTIELHFIGVEAPMVITKSATTLSLVAKGMDLSDSSKDL
Ga0302194_102271241	3300030506	Bog	MRFYILPAEQGETICINFDHVAYIRLGAKTIDLHFMGVEAPMVITKTAATLTLVAKGMDLSDSSKDLVSTL
Ga0302192_101729571	3300030507	Bog	GPRVDACSGMRFYLLPTEQGKTTCVNFDHVAYIDVCLKTIEMHFIGVEAPMVVTKSPTTLALVAKGMDLSDSGKDLINTL
Ga0311372_109214913	3300030520	Palsa	MRFYMLPAEAGKTTLINFDHVAFIDISGKTIDIHFIGVEAPMSVTKTPTTLSLVAKGMDLSDNSKDLVAAL
Ga0311345_101712723	3300030688	Bog	TCINFEHVAYIQLGPQTIELHFIGVEAPMVIKKTATTLSLVAKGMDLSDTSKDLVNTL
Ga0302325_103399733	3300031234	Palsa	MLSAIFSAVVNVPFLRHLDGMRFYMLPAEQGITTCINFDHVAYIHLGAKTIELHFMGVEAPMVITKTATTLALVAKGMDLSDASKDLVSTL
Ga0302325_106443732	3300031234	Palsa	MRFYLLPTEQGKTTCINFDHVTYIRVGAQAIDVYFVGIEAPMIITKTPTTLALIAKGMDLSDSSKDLVGTL
Ga0302325_126682532	3300031234	Palsa	MRFYILPAEQGKTTCINFDHVAYIHLTAQTIELHFIGVEAPMVVTKTPATLSLVAKGMDLSDNSKDLVNSL
Ga0302325_133505591	3300031234	Palsa	MRFYMLPAEQGKTTCINFDHVAYIQLGAQTIELHFIGVEAPMVITKSPTTLALVAKGMDLSDSSKDLVSTL
Ga0302325_134119591	3300031234	Palsa	MRFYLLPTEQGETTCINFDHVAYIRVRAKEIELHFIGVELPMVITKTPTTLALVAKGMDLSDSSKDLVSTL
Ga0302324_1006447791	3300031236	Palsa	MGHSLAMRFYMLPSDQGKTTCINFEHVAYIHLGAKTIELHFIGVEAPMIITKSPTTLALVAKGMDLSDSSKDLVGTL
Ga0302324_1009047363	3300031236	Palsa	MRFYMLPAEQGKTTCINFDHVAYIQLGAQTIELHFIGVEAPMVITKTPTTLALVAKGMDLSDASKDLVSTL
Ga0302324_1027988071	3300031236	Palsa	SLRHSFPMRFYMLPTDEGKTTCINFEHVAYIHLGAKTIELHFIGVEAPMIVTKSATTLALVAKGMDLSDSSKDLVNTL
Ga0302324_1028849172	3300031236	Palsa	MRFYMLPPEQGKTTCINFDHVAYIHLGAKTIELHFIGVDAPMVVTKSPTTLALVAKGMDLSDSSKDLVGTL
Ga0302320_101088194	3300031524	Bog	MRFYMLPAEQGKTTCINFDHVAYIHLGPQTIELHFIGVEAPMVITKSPTTLALVAKGMDLSDASKDLVSTL
Ga0302320_105773502	3300031524	Bog	MRFYMLPAVQGETTCINFDHVAYVRLGAKTIELHFMGVEAPMVITKSAATLALVAKGMDLSDTSKDLVNTL
Ga0302320_106205851	3300031524	Bog	KGRPLGHSLGMRFYILPAEQGTTTCINFDHVAYILLGVKTIELHFIGVEAPMVVTKSPATLALVAKGMDLSDSSKDMVSTL
Ga0302320_108375332	3300031524	Bog	MRFYLLPIDQGTTTCINFEHVAYIQLGPQTIELHFIGVEAPMVIKKTATTLSLVAKGMDLSDTSKDLVNTL
Ga0302326_112205632	3300031525	Palsa	MRFYILPTDEGKTTCINFDHVAIVVITAASIELHFAGVEAPMVIKKTPTTLSMIGKGMDISDTSKDMVSNL
Ga0302326_123929972	3300031525	Palsa	MRFYMLPAEQGQTTCINFEHVAYIHLGAKTIELHFIGVEAPMVVTKTPTTLALVAKGMDLSDASKDLVSTL
Ga0310686_1004153273	3300031708	Soil	MRFYILPTEQGETTCINFDHVAYIRLGAKTIELHFIGVEAPMVITKSPATLSLVAKGMDLSDTSKDMVNAL
Ga0316232_10218533	3300032605	Freshwater	MRFYMLPAEQGKTICINFDHVAYICLGSQTIELHFIGVEAPMVITKSSATLALVAKGMDLSDSSKDLVSTL
Ga0316231_10333574	3300032722	Freshwater	KTICINFDHVAYICLGSQTIELHFIGVEAPMVITKSSATLALVAKGMDLSDSSKDLVSTL
Ga0334804_123374_39_254	3300033818	Soil	MRFFILPADQGETTCVNFDHVAYIRLGPKTIELHFMGVEAPMVITKSPTTLALVAKGMDLSDSSKDLVGTL
Ga0334792_065905_663_878	3300033888	Soil	MRFYILPAEQGETTCINFDHVAYIRLAAKTIELHFMGVEAPMVLTKSAATLALVAKGMDLSDSSKDLVNTL
Ga0370483_0222796_49_264	3300034124	Untreated Peat Soil	MRFYILPTDEGKTTCINFDHVAVVVISGPSIELHFAGVEAPMVIKKTPTTLAMIGKGMDISDASKDMVSNL
Ga0370514_141029_126_341	3300034199	Untreated Peat Soil	MRFYILPTEQGKTTCINFDHVAYIHLGAQTIALHFIGVEAPMVITKSPATLALVAKGMDLSDTSKDMVNAL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102162

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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