NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F102172

Metagenome Family F102172

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102172
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 47 residues
Representative Sequence MFLLWEGFKACLVQIYEDFEEEETVTRKLYKLKQTGSAMVYTTEFQALSV
Number of Associated Samples 1
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 58.82 %
% of genes near scaffold ends (potentially truncated) 4.95 %
% of genes from short scaffolds (< 2000 bps) 33.66 %
Associated GOLD sequencing projects 1
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (98.020 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza
(100.000 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(100.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 56.41%    β-sheet: 0.00%    Coil/Unstructured: 43.59%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A98.02 %
All OrganismsrootAll Organisms1.98 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300033179|Ga0307507_10139367Not Available1866Open in IMG/M
3300033179|Ga0307507_10195303All Organisms → Viruses → Predicted Viral1413Open in IMG/M
3300033179|Ga0307507_10247962All Organisms → Viruses → Predicted Viral1155Open in IMG/M
3300033179|Ga0307507_10250262Not Available1146Open in IMG/M
3300033179|Ga0307507_10257696Not Available1118Open in IMG/M
3300033179|Ga0307507_10263687Not Available1097Open in IMG/M
3300033179|Ga0307507_10284294Not Available1031Open in IMG/M
3300033179|Ga0307507_10287167Not Available1022Open in IMG/M
3300033179|Ga0307507_10297698Not Available992Open in IMG/M
3300033179|Ga0307507_10308001Not Available965Open in IMG/M
3300033179|Ga0307507_10322843Not Available928Open in IMG/M
3300033179|Ga0307507_10345700Not Available878Open in IMG/M
3300033179|Ga0307507_10373751Not Available825Open in IMG/M
3300033179|Ga0307507_10388379Not Available800Open in IMG/M
3300033179|Ga0307507_10405552Not Available773Open in IMG/M
3300033179|Ga0307507_10409187Not Available767Open in IMG/M
3300033179|Ga0307507_10409961Not Available766Open in IMG/M
3300033179|Ga0307507_10410183Not Available766Open in IMG/M
3300033179|Ga0307507_10434802Not Available731Open in IMG/M
3300033179|Ga0307507_10449454Not Available712Open in IMG/M
3300033179|Ga0307507_10457111Not Available703Open in IMG/M
3300033179|Ga0307507_10461273Not Available698Open in IMG/M
3300033179|Ga0307507_10501340Not Available654Open in IMG/M
3300033179|Ga0307507_10526405Not Available630Open in IMG/M
3300033179|Ga0307507_10530188Not Available626Open in IMG/M
3300033179|Ga0307507_10538601Not Available619Open in IMG/M
3300033179|Ga0307507_10578683Not Available585Open in IMG/M
3300033179|Ga0307507_10605551Not Available565Open in IMG/M
3300033179|Ga0307507_10618498Not Available556Open in IMG/M
3300033179|Ga0307507_10638128Not Available543Open in IMG/M
3300033179|Ga0307507_10668166Not Available524Open in IMG/M
3300033179|Ga0307507_10669819Not Available523Open in IMG/M
3300033179|Ga0307507_10677427Not Available519Open in IMG/M
3300033179|Ga0307507_10683876Not Available515Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza100.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300033179Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EMHost-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0307507_1013936733300033179EctomycorrhizaMFSLWKGFKACLVQIYEDSKEEETVTKKLYKLKQTRSAIVYTIEFQALSV
Ga0307507_1017274923300033179EctomycorrhizaMFLLWEGFKVHFIQIYGDSKEEETVTKKLYKLRQTKSAIVYIIEFQVLSV
Ga0307507_1017502933300033179EctomycorrhizaMFLLWEGFKACFVQMYKDFKEEEIATRKLYKLRQTKSAIIYTIEFQALSV
Ga0307507_1018066513300033179EctomycorrhizaSLWEGFKAHLVQMYGDFKEEETVTKKLYKLRQTASAIIYTIEFQALLV
Ga0307507_1018417313300033179EctomycorrhizaMFLLWEGFKAHLVQMYGDSKKKETTTKKLYKLRQTGSAMVYIIEF
Ga0307507_1019530333300033179EctomycorrhizaMFLLWEGFKACLVQMYEDFEEEEIVTKKIYELKQTGSAIVYMTEFQALSV
Ga0307507_1024796213300033179EctomycorrhizaWESFKAHLVQIYRDSEEEETATRKLYKLKQTGSAMVYMTEFQALSV
Ga0307507_1025026233300033179EctomycorrhizaMFLLWEGFKSQLVQIYGDSEEEETVIRKIYKLKQTASAIVYITEFQSLLV
Ga0307507_1025659813300033179EctomycorrhizaMFLLWEDFKACLVQIYGDFEEEETVIKKIYKLKQTGSAIMYTTEFQTLSV
Ga0307507_1025769623300033179EctomycorrhizaMFLLWEDFKAHLVQIYGDFKEEEIVTKKLYKLRQTESAIVYTTKF
Ga0307507_1026368723300033179EctomycorrhizaMFLLWEGFKAYLVQIYRDSEEEKTVTRKLYKLKQTALAIVYTTEF
Ga0307507_1026807223300033179EctomycorrhizaMFLLWKGFKAHLVQMYGDSEEEETVTRKLYKLRQTASAIVYTTEF
Ga0307507_1027058723300033179EctomycorrhizaMFLLWEDFKACLVQMYKDFEEEETVTRKLYKFRQTASAIVYTIEFQVLSV
Ga0307507_1027486313300033179EctomycorrhizaMFLLWEGFKACLVQIYGDSEEEETVTKKMYKLKQTGSAMVYMTEFQVLSV
Ga0307507_1027550313300033179EctomycorrhizaMFSLWEGFKAYLVQMYGDFEEEKTVTKKLYKLRQTESAMVYIIEFQVLSV
Ga0307507_1028424123300033179EctomycorrhizaMFLSWKGFKAHLVQMYGDFEKEETVTRKLYKLRQTASAIIYTTEF
Ga0307507_1028429423300033179EctomycorrhizaMFSLWEDFKACLVQIYGDFKEEEIITKKMYEFKQTRSAIVYTTEF
Ga0307507_1028621423300033179EctomycorrhizaMFLLWEGFKACLVQIYGDFKEEEIVIKKIYKLKQTGSAIMYTIEF
Ga0307507_1028716733300033179EctomycorrhizaMFLLWEDFKVYLVQMYGDSEEEEIVTKKIYELKQTGSAIVYITEF
Ga0307507_1029093613300033179EctomycorrhizaMFLSWKGFKACLVQIYGDFEEEEIVTKKLYKLKQTGSAMVYITEFQVLLV
Ga0307507_1029769823300033179EctomycorrhizaMFSLWEGFKAHLVQMYGDSKEEEIATRKLYKLRQTGSAMVYTTEF
Ga0307507_1030800113300033179EctomycorrhizaEVQYMFLSWEGFKACLVQIYGDFEEEETATRKMYELKQTGSAIVYMTEFQVLSV
Ga0307507_1031222223300033179EctomycorrhizaMFLLWEDFKARLVQMYGDLEEEETAIRKLYKLRQTASAIVYTTEF
Ga0307507_1032035113300033179EctomycorrhizaMFLLWEDFKAHLVQMYGDFKEEETVTRKLYKLRQTASAIMYTTKF
Ga0307507_1032284333300033179EctomycorrhizaMFLLWEDFKACLVQMYGDFKEEETATRKLYKLRQTASAIIYTTEFQVLSV
Ga0307507_1032641813300033179EctomycorrhizaMFSLWEGFKACLVQMYRDFEEEETAIKKLYKLKQTGSAMVYTIEF
Ga0307507_1033678113300033179EctomycorrhizaMFLSWEDFKAYLVQMYKDSKEEETVTRKLYKLKQTGSAIVYIIEFQALSV
Ga0307507_1034336513300033179EctomycorrhizaMFSSWEGFKAYLVQMYKDFKEEETAIKKLYKLRQTASAIVYIEF
Ga0307507_1034570023300033179EctomycorrhizaMFLSWEGFKAHLVQMYGDSEEEETVTRKLYELKQTASAMVYIIEF
Ga0307507_1035468413300033179EctomycorrhizaMFLLWENFKACLVQMYRDFEEEETATRKLYKLRQIASAIVYTTKFQALSV
Ga0307507_1036880523300033179EctomycorrhizaMFSLWKGFKAHLVQMYRDLEEEETVTKKIYKLKQTGSAIVYTTEF
Ga0307507_1037375113300033179EctomycorrhizaMFLLWEDFTACLVQMYGDFEEEETAIRKLYKLRQTASAIVYTIEF
Ga0307507_1038582813300033179EctomycorrhizaMFLLWEGFKACLVQMYKDFKEEEIVIRKLYKLRQTESAIVYITEF
Ga0307507_1038837923300033179EctomycorrhizaMFLLWEGFKACLVQMYGDSKEKETVTKKLYKLRQTALAIVYITEFQALSV
Ga0307507_1039402113300033179EctomycorrhizaMFLLWEDFKAHLVQMYGDSKKEETVTRKIYKLKQTASAIVYTIEF
Ga0307507_1040158213300033179EctomycorrhizaMFLLWEGFKACLVQMYKDSKEEEIVIRKIYKFKQTGLAIVYIIEF
Ga0307507_1040555233300033179EctomycorrhizaMFLLWEDFKACLVQMYRDFKKEETATKKLYKLRQMASAIVYTTEFQALSV
Ga0307507_1040858613300033179EctomycorrhizaMFLLWEDFKACLVQIYRDSEEEETAIRKLYKLRQTASAIVYMTEFQVLSV
Ga0307507_1040918733300033179EctomycorrhizaMFLLWEDFKTRLVQIYGDFKEEEIVTKKIYKFKQTGSAIVYMTEFQVLLV
Ga0307507_1040996123300033179EctomycorrhizaMFLSWEGFKAHLVQIYGDSKEEETVTRKLYKLKQTVSAIVYTTEF
Ga0307507_1041018313300033179EctomycorrhizaMVWEEFKACLIQMYRDFEEEETVTRKLYKLKQIASAMVYMTEFQLLSV
Ga0307507_1041909413300033179EctomycorrhizaMFLLWKGFKAHLVQIYGDFEKEETVIRKIYKLKQTGSAIVYIIE
Ga0307507_1042096923300033179EctomycorrhizaMFLLWEGFKSQLVQMYGDFKEKEMAIRKIYKLKQTVSAIIYTTEFQLLSV
Ga0307507_1043054523300033179EctomycorrhizaMFLLWEDFKACLVQMYGDFEEEEIVTKKLYKLRQTASAIMYMTEFQVLSV
Ga0307507_1043336713300033179EctomycorrhizaMFLLWKGFKACLVQIYGDSEEEEIVTKKIYKLKQTGSAMVYIT
Ga0307507_1043480233300033179EctomycorrhizaKAHLIQMYGDSKEEEIVTRKMYKLRQIKSAIVYITEFQALSV
Ga0307507_1044235913300033179EctomycorrhizaMFLSWEGFKAHLVQMYGDFKEEETVTKKMYKFKQTGSAMVYTTEFQALSV
Ga0307507_1044945423300033179EctomycorrhizaMFLLWEGFKAHLVQMYGDFKEEETATRKLYKLKQTASAMVYTTEF
Ga0307507_1045266213300033179EctomycorrhizaEIQYIFLLWKGFKACLVQMYGDSKEEETITRKLYKLKQIKSAIVYTTEFQALSV
Ga0307507_1045711123300033179EctomycorrhizaMFLLWEDFKACLVQMYGDFKEEETATKKLYKLRQTVSAIVYTTEF
Ga0307507_1046127323300033179EctomycorrhizaMFLLWKGFKAYLVQIYGDFKEEETVTRKLYKFRQTESAIMYTTEFQALLV
Ga0307507_1046513613300033179EctomycorrhizaMFLLXKGFKAHLVQMYRDSEEEEIVTRKIYKLKQTGLAMVYITEFQALSV
Ga0307507_1046566813300033179EctomycorrhizaMFLLWEGFKAHLVQMYGDSKEEKTATRKIYKLRQTASAMVYIIEFQALSV
Ga0307507_1046641213300033179EctomycorrhizaMFLLWEGFKACLVQMYKDSEEEETVIRKLYKLRQTASAMVYMTEF
Ga0307507_1047690923300033179EctomycorrhizaMFLLWEDFKARLVQMYGDSEEEETVIRKLYEFKQTGSAMVYMTEF
Ga0307507_1047781513300033179EctomycorrhizaMFLLWEDFKAHLVQIYGDSEEEETVTKKIYKLKQTGSAIVYIIEFQVLSV
Ga0307507_1048219613300033179EctomycorrhizaMFLLWKGFKACLVQIYGDSEEEEIVTRKMYKLKQTKSAMVYITEFQALSV
Ga0307507_1048250013300033179EctomycorrhizaMFLLWEGFKAYLVQIYGDFKEEETVTKKLYKLKQTGSAMMYITEFQA
Ga0307507_1048579113300033179EctomycorrhizaMFLLWEDFKVCLVQIYGDFEEEEIVTKKIYKLKQTGSAIVYTTEFQVLSI
Ga0307507_1048763013300033179EctomycorrhizaMFSLWEGFKAHLVQIYGDSKKEETVTKKLYELKQTGSAIMYTTEFQALSV
Ga0307507_1048763613300033179EctomycorrhizaKAHLVQIYGDFKEEETATRKLYKLKQTRSAMVYITEFQVLSV
Ga0307507_1050134023300033179EctomycorrhizaMFLLWKDFKAHLVQMYGDSEKEETATKKLYKLKQTASAIVYTTEFQVLSV
Ga0307507_1051344923300033179EctomycorrhizaMFLLWEDFKACLVQIYGDFKEEEIVTRKIYKLKQTGSVIVYTIEFQSLLV
Ga0307507_1051988713300033179EctomycorrhizaMFLLWKGFKSQLVQMYKNSEEEETVTKKIYKLKQT
Ga0307507_1052514313300033179EctomycorrhizaMFLLWEDFKACLVQMYRDSEEEETATKKLYKLKQTGSAMVY
Ga0307507_1052600313300033179EctomycorrhizaMFLLWEGFKACLVQMYRDFKEEETATKKLYKLRQTASAIVYIIEFQALSV
Ga0307507_1052638113300033179EctomycorrhizaMFSLWESFKAHLVQIYGDFKEEEIVTRKLYKFRQIESAMVYTIEFQALSV
Ga0307507_1052640513300033179EctomycorrhizaFKACLVQMYRDFEEEETVTKKLYKLKQTGSAIVYITEFQALSV
Ga0307507_1053018813300033179EctomycorrhizaMFLLWEGFKVHLVQMYRDSEEEETVTRKLYKLKQTGSAIMYITEFQALSV
Ga0307507_1053146413300033179EctomycorrhizaLLWKGFKACLIQIYRDFKEEKTVTRKLYKFKQTRSAMVYTTEFQALSV
Ga0307507_1053860123300033179EctomycorrhizaMFLLWEGFKACLIQMYGDFEEEETIIKKMYKLRQTASAMVYIIEFQVLSV
Ga0307507_1054731513300033179EctomycorrhizaMFSLWEDFKACLVQIYRDSEEEEIVIKKIYELKQTASAIMYITEFQALSV
Ga0307507_1055637023300033179EctomycorrhizaMFLLWEGFKACLVQMYGDSEEEKTVTRKLYKLKQTALAIVYTTEFQALSV
Ga0307507_1055817913300033179EctomycorrhizaMFSLWEGFKAHLIQMYGDFKEEETVIKKLYKLKQTISAIVYTIEFQLLSV
Ga0307507_1057868323300033179EctomycorrhizaMFLLWEGFKACLVQMYRDSKKEETATRKLYKLRQTALAIAYTTEFQVLLV
Ga0307507_1058370313300033179EctomycorrhizaMFLLWEGFKAHLVQIYRDSKEEETVTRKMYKLKQTGSAMVYTTEF
Ga0307507_1058748813300033179EctomycorrhizaMFSLWEDFKVHLVQMYGDSKKEKTATRKLYKFRQTASAIVYTTEF
Ga0307507_1059034213300033179EctomycorrhizaMFLLWEGFKACLVQIYKDFEEEETAIRKLYELKQTGSAIVYMTEFQVLSV
Ga0307507_1060095023300033179EctomycorrhizaMFLSXKDFKVQLVQMYKDFEEEETAIRKLYKLKQTGSAMVYMTEFQALSV
Ga0307507_1060555133300033179EctomycorrhizaAHLVQMYGDFKKEETVTRKLYKLKQTGSAMVYIIEFQALSV
Ga0307507_1061112813300033179EctomycorrhizaMFLSWEDFKACLVQMYGDSKEEETVTRKLYKLKQTASAIIYTTEFQALSV
Ga0307507_1061849823300033179EctomycorrhizaMFLLWEDFKACLVQIYKDSEEEEIVTRKIYKLKQIGSAIIYTTEF
Ga0307507_1062598123300033179EctomycorrhizaMFSLWEGFKACLVQIYKDFKKEETVTKKMYKLRQTKSAIMYTTEFQVL
Ga0307507_1063812823300033179EctomycorrhizaMFLLWEGFKAYLVQMYGDSKEEEIVTKKLYKLKQTGLAIVYTIEF
Ga0307507_1066074423300033179EctomycorrhizaMFLLWEDFKAHFIQMYGDFKEEEIVTKKLYKLRQIESAIMYIIEFQVLSV
Ga0307507_1066197313300033179EctomycorrhizaMFLLWEDFKTCLVQIYGDSEEEETVIKKIYKLKQTGSAIVYITEFQALSV
Ga0307507_1066475813300033179EctomycorrhizaMFLLWEGFKAHLVQMYKDFKEEEIITRKLYKLKQTGSAIVYITEF
Ga0307507_1066735613300033179EctomycorrhizaMFLLWEGFKACLVQIYEDFEEEETVTRKLYKLKQTGSAMVYTTEFQALSV
Ga0307507_1066816613300033179EctomycorrhizaMFLLWKGFKAHLVQMYGDSKKEEIVTKKMYKLKQTGSAMVYTTEF
Ga0307507_1066981923300033179EctomycorrhizaMFSLWEGFKAHLVQMYGDSKEEETVTRKLYKLRQTTLAIMYTTEFQALSV
Ga0307507_1067012013300033179EctomycorrhizaMFLLWEGFKAYLVQIYRDSEKEETVTKKMYKLKQTGLVMVYMTEF
Ga0307507_1067050213300033179EctomycorrhizaMFLLXEGFKACLVQIYRDFEEEEIAIKKLYELKQTGSAMVYMTEF
Ga0307507_1067574013300033179EctomycorrhizaMFLLWEGFKACLVQMYRDSEEEKTAIKKMYKLKQTGSVIVYTTEFQVLSV
Ga0307507_1067742723300033179EctomycorrhizaMFSLWEGFKAHLVQIYGNSKEKEIVTRKLYELRQTASAIVYTTEF
Ga0307507_1068311513300033179EctomycorrhizaMFLLWKGFKAHLVQIYRDFEEEKTVTKKLYKFRQTESAIVYITEF
Ga0307507_1068387623300033179EctomycorrhizaMFLLWEDFKAXLVQIYKDFKEEETVTKKLYKLKQTESAIVYTTEFQVLSV
Ga0307507_1069014413300033179EctomycorrhizaDFKACLVQIYRDFEKKEIITKKIYKLKQTGSAIVYITEFQALLV
Ga0307507_1070388223300033179EctomycorrhizaVWYIFSLWEGFKAHLVQMYGDSEEEETVTRKLYKLKQTASAIVYITEFQALSV
Ga0307507_1070393613300033179EctomycorrhizaMFSLWKGFKSQLVQIYGDSEEEEMATRKIYKLKQTASAIVYMTEFQSLSI
Ga0307507_1070670113300033179EctomycorrhizaMFLSWEDFKTRLVQIYRDSKEEETVTRKLYELKQTGSAIVYTIGFQALSV
Ga0307507_1071249813300033179EctomycorrhizaMFLLWEGFKSHLVQMYRDLEEEETVTRKIYKLRQTASAIIYTTEFQSLSV

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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