Metagenome Family F102184

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102184
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	41 residues
Representative Sequence	VPHVAQPGHWLGPVTGLGWLGLAQPMWAELGPAQKIKK
Number of Associated Samples	21
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.99 %
Associated GOLD sequencing projects	21
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (98.020 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza (58.416 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (84.158 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF07727	RVT_2	4.95
PF03732	Retrotrans_gag	3.96
PF01535	PPR	0.99
PF02127	Peptidase_M18	0.99
PF00931	NB-ARC	0.99
PF07983	X8	0.99
PF00201	UDPGT	0.99
PF14223	Retrotran_gag_2	0.99
PF01167	Tub	0.99
PF14291	DUF4371	0.99
PF00332	Glyco_hydro_17	0.99
PF00069	Pkinase	0.99
PF00098	zf-CCHC	0.99
PF13976	gag_pre-integrs	0.99
PF00141	peroxidase	0.99
PF03357	Snf7	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.96
COG1819	UDP:flavonoid glycosyltransferase YjiC, YdhE family	Carbohydrate transport and metabolism [G]	1.98
COG0376	Catalase (peroxidase I)	Inorganic ion transport and metabolism [P]	0.99
COG1362	Aspartyl aminopeptidase	Amino acid transport and metabolism [E]	0.99
COG1363	Putative aminopeptidase FrvX	Carbohydrate transport and metabolism [G]	0.99
COG5309	Exo-beta-1,3-glucanase, GH17 family	Carbohydrate transport and metabolism [G]	0.99
COG5491	Archaeal cell division protein CdvB, Snf7/Vps24/ESCRT-III family	Cell cycle control, cell division, chromosome partitioning [D]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
All Organisms	root	All Organisms	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
cellular organisms	root	All Organisms → cellular organisms	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
rosids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
fabids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Malpighiales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Salicaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Saliceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Salix	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Salix	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300028786\|Ga0307517_10383819	Not Available	749	Open in IMG/M
3300030521\|Ga0307511_10076191	Not Available	2400	Open in IMG/M
3300032355\|Ga0325401_1002332	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	16835	Open in IMG/M
3300032389\|Ga0325405_1001009	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Salix	28275	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Roots	Host-Associated → Plants → Roots	58.42%
Wood	Host-Associated → Plants → Wood	38.61%
Phylloplane	Host-Associated → Plants → Phylloplane	2.97%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified	58.42%
Unclassified	Host-Associated → Plants → Wood → Unclassified	38.61%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	2.97%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	58.42%
Unclassified	Host-Associated → Plants → Wood → Unclassified → Unclassified	38.61%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	2.97%

Habitat	Taxonomy	Distribution
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	58.42%
Xylem	Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem	38.61%
Leaf	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf	2.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300028786	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM	Host-Associated	Open in IMG/M
3300028794	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM	Host-Associated	Open in IMG/M
3300030521	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM	Host-Associated	Open in IMG/M
3300030522	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM	Host-Associated	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031649	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM	Host-Associated	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300031838	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM	Host-Associated	Open in IMG/M
3300032354	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4	Host-Associated	Open in IMG/M
3300032355	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2	Host-Associated	Open in IMG/M
3300032374	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1	Host-Associated	Open in IMG/M
3300032389	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2	Host-Associated	Open in IMG/M
3300032390	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1	Host-Associated	Open in IMG/M
3300032740	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R4	Host-Associated	Open in IMG/M
3300032741	Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdKOR-R3	Host-Associated	Open in IMG/M
3300033160	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R3	Host-Associated	Open in IMG/M
3300033179	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM	Host-Associated	Open in IMG/M
3300033180	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM	Host-Associated	Open in IMG/M
3300034901	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0307517_100096473	3300028786	Ectomycorrhiza	VPHVAQPGHWLGPVTGLGWLGLAQPMWAELGPAQKIKK
Ga0307517_100112219	3300028786	Ectomycorrhiza	MRAVAQPGHWLGPVTELGRLGLAQPMWAELGPTPKT
Ga0307517_100490941	3300028786	Ectomycorrhiza	VPHVAQPGYWLGPVTRLGWLGLAQHMWAELGPAQKNKKNKK
Ga0307517_101454291	3300028786	Ectomycorrhiza	MRAVAQPGHWFGPVTGLGWLGLAQPMWAELGPAPKKIKIK
Ga0307517_101751811	3300028786	Ectomycorrhiza	VLHVAQSGHWLGPVTGLGWLGVAQPMWAELDPALKNKKNKKIKK
Ga0307517_102517492	3300028786	Ectomycorrhiza	MAQPGHWFGPVTGLGWLGLAQPMWAELDPAPEIIKNIKKI
Ga0307517_103245782	3300028786	Ectomycorrhiza	VPLVFFAQPGHWLGPVTGLGWLGLAQPMWAELGPAQKCKKKKKDKK
Ga0307517_103333522	3300028786	Ectomycorrhiza	VPHVAQPGHWFGPVTEPGWLGLAQPMWAELDPAPKIIKNRKKYKKYKKIGEIEK
Ga0307517_103838191	3300028786	Ectomycorrhiza	VPSVAQPGHWLGPVTGLGWLDLAQPMWAELGPAQKNKKNKK
Ga0307517_104425172	3300028786	Ectomycorrhiza	VAQPGHWLGPVTRLGQLGYMWAELGPAPKIIKNKK
Ga0307517_105918761	3300028786	Ectomycorrhiza	VLHVAQPGHWLGPVTGPGWLGLAQPMWAELDPAQKKNKKNKKTGK
Ga0307515_100028696	3300028794	Ectomycorrhiza	MRALAQPGHWLGPVTGPGWLGLAQPMWAELDPAKNI
Ga0307515_100554143	3300028794	Ectomycorrhiza	VLHVAQPGHWLGRLGLAQPIWIELGPASKKYKKKTEK
Ga0307515_100677452	3300028794	Ectomycorrhiza	VPAAQPGHWLGPVAGPGWLGPAQHTWAELGPAQKNKKIKK
Ga0307515_108486611	3300028794	Ectomycorrhiza	VLHVAQPSHWLGLVTRLGWLGLAQPMWAELGPAPKH
Ga0307515_108761222	3300028794	Ectomycorrhiza	VPHVAQPGHWFGPVTEPGWLGLAQPMWAELDPAPKIIKNRKKYKKYKKIGEI
Ga0307511_100761911	3300030521	Ectomycorrhiza	VLHVAQPGHWLGPVTRPGWLGLAQSIWAELGPTPQNKNLKFKN
Ga0307511_100891121	3300030521	Ectomycorrhiza	VPHVAQPGHWLGPVTRLGWLGLAQPMWAELGPAQKNIKNIKYKI
Ga0307511_101014201	3300030521	Ectomycorrhiza	MRALAQPGHWLGPVTRPGWLGVAQPMWAEMDPAKNI
Ga0307511_101121023	3300030521	Ectomycorrhiza	CLAQPGHWLGPLAGPGRLGLAQPMWAELGPAQKYK
Ga0307512_101859712	3300030522	Ectomycorrhiza	VNFNSLAQCSSAQPGHWLGPVARSGWLGLAQPMWAELGPTQNNKK
Ga0307512_103709151	3300030522	Ectomycorrhiza	VLHVAQPGHWLGPVTRPGWLGLAQSIWAELGPTPQNKNLKLKN
Ga0307513_100146451	3300031456	Ectomycorrhiza	VPHVAQPGHWLGPVTRLGWLGLTQPMWAELGAAQKNKN
Ga0307513_100319202	3300031456	Ectomycorrhiza	VPHVAQPGHWLGPVTGLGWLGLAQPMWAELGPAQKK
Ga0307513_100324994	3300031456	Ectomycorrhiza	VAQPGHWLGPVTGLGWLDLAQPMWAELGPAQKNKKNKK
Ga0307513_100476453	3300031456	Ectomycorrhiza	MAQPGHWLGPVTGLGWLGLAQPMWAELDPAPKIIKKYKKYKKI
Ga0307513_101233814	3300031456	Ectomycorrhiza	MLHVAQPGHWLGPVTGPAWLGLAQSKKNKKNKNYVCVKINLFYLFIR
Ga0307513_103722023	3300031456	Ectomycorrhiza	VPHVAQPGHWLRPVTGLGWLGLAQPMWAELGPAQKKIK
Ga0307513_110930811	3300031456	Ectomycorrhiza	MAQPGHRLGPVTGLGWLGLAQPMWAELDPAQKIIQK
Ga0307509_100218235	3300031507	Ectomycorrhiza	VPSVAQPGHWLGPVTGLGWLGLAQPMWAELDPAPKT
Ga0307509_100753743	3300031507	Ectomycorrhiza	VLHVAQPGHWLGPVTRAGCLGLGQPISAKLGPNPKNKNKK
Ga0307509_101236202	3300031507	Ectomycorrhiza	VLHVAQPGHWLGPVTGPGWLGLAQPIWAELGPAQKN
Ga0307509_104250022	3300031507	Ectomycorrhiza	VPHVAQPGHWLGPVTGLGWLGLAQPMWAELGPAQKIKKQKNRKTEK
Ga0307509_105322731	3300031507	Ectomycorrhiza	VLHVAQPGHWLGPVTWPGWLGQAQPTWAERDPAQKKSKKIKKIKS
Ga0307508_100164105	3300031616	Ectomycorrhiza	MLHVAQPGHWLGPVTGPDWLGLAQPIWAKLGPTQKNKK
Ga0307508_100566984	3300031616	Ectomycorrhiza	VLHVAQSGHWLGPVTGLGWLGVAQSMWAELDPALKNKKNKKIKK
Ga0307508_102477441	3300031616	Ectomycorrhiza	VAQPGHWLGPMTGPGWLGPAQPMWAELDPAPKKLKKIKKYVHA
Ga0307508_104224851	3300031616	Ectomycorrhiza	FGSRVPHVAQPGHWLRPVTGLGWLGLAQPMWADLGPAQKT
Ga0307508_108812442	3300031616	Ectomycorrhiza	VPHVAQPGHWFGPVTEPGWLGLAQPMWAELDPAPKIIKNRKKYKKYKKIG
Ga0307514_100571435	3300031649	Ectomycorrhiza	VLHVAQPGHWLGPMTGPGWLGPAQPMWAELDPAPKKLKKIKKYVHA
Ga0307514_102949982	3300031649	Ectomycorrhiza	MRAVAQPGHWIGPVTGLGWLGLAQPMWAELGPAPKKIKNKKTEK
Ga0307514_103077971	3300031649	Ectomycorrhiza	MPHVAQPGHWLGPVTGLGWLGLAQPMWAELGPTQKNKK
Ga0307516_100372611	3300031730	Ectomycorrhiza	MAQPGHWLGLVTGMGWLGIAQPMWAELDPALKKKKKNRKI
Ga0307516_100394821	3300031730	Ectomycorrhiza	VPHVAQPGHWLGPVTGLGWLGLAQPMWAELGPTQKNKKKKK
Ga0307516_100827574	3300031730	Ectomycorrhiza	VVRAFAQQGHWLGPVTGLGWLGLVQPIWAELGPAPKKMKNRKINNRKNRKK
Ga0307516_106394751	3300031730	Ectomycorrhiza	VPHVAQPGHWLGPVTRLGQLGYMWAELGPAPKIIKNKK
Ga0307516_107893961	3300031730	Ectomycorrhiza	MAQPGHWFGPVTGLGWLGLAQPMWAELDPAPEIIKNIKKYKKYKKIGEIEK
Ga0307516_109172471	3300031730	Ectomycorrhiza	MAQPGHWLGPVTGLGWLGLAQAMWVELGPAQKNKKEQK
Ga0307516_110162621	3300031730	Ectomycorrhiza	MAQPGHWLGPVTGLGWLGLAQPMWAAQKNKKEQKSKKGRKN
Ga0307518_100223993	3300031838	Ectomycorrhiza	VRAFAQPGHWLGPVTGLGWLGLVQPMWAELGPAPKIIKNKK
Ga0307518_101349652	3300031838	Ectomycorrhiza	VLYVAQPGHWLGPVTGLGWLGLAQPMWAKLGPSQKKHKIKK
Ga0307518_102218961	3300031838	Ectomycorrhiza	MRAVAQPGHWLGLVTELGWLGLAQPMWAELGPAPKKINNKKIEK
Ga0307518_105007481	3300031838	Ectomycorrhiza	VPHVAQPGHWFGPVTEPGWLGLAQPMWAELDPAPKIIKNRKKYKQ
Ga0325403_100133210	3300032354	Xylem	VVRAFAQPSHWLGPVTGLGWLGLVQPMWAELGPTPKKMKNRKIKK
Ga0325403_100205812	3300032354	Xylem	VPLVFAQPGHWLGLVTKLGWLGLAQPMWAELGPAQKYK
Ga0325403_10036556	3300032354	Xylem	MAQPGHWFMRVIGLSWLGLAQHMWAELGPAPKHKK
Ga0325403_10076595	3300032354	Xylem	VPHVAQSGHWLGLVTGLGWLGLAQPMWAELDPAPKTINKKIKNNIEK
Ga0325403_10094075	3300032354	Xylem	VLHVAQPGHWFRPVTGLGWLGLAQPMRAELDPAQKKTKKLKI
Ga0325403_10179394	3300032354	Xylem	VPRVAQPGHWLGPVTRLGRLGLAQPMWAELGPAPQKKEK
Ga0325403_10181832	3300032354	Xylem	MAQPGHWLGPVTGLGWLGPAQPMWAELGPARKKKLKSKK
Ga0325403_10234831	3300032354	Xylem	MRAVAQPGHWFGPVTGLGWLGLAQPMWAELDPAPKITKIIKNKKIEK
Ga0325403_10238536	3300032354	Xylem	VPSVAQPGHWFGPVTGLGWLGLAQPIRAELGPASPKNIKNKK
Ga0325403_10314032	3300032354	Xylem	MLHVAQPGHWLGPVTGPGWLGLAQPMWAELGPTQKNKK
Ga0325403_10391871	3300032354	Xylem	VPHVAQPGHWLGPVTRLGWLGLAQPMWAKLGPAPKHKIEKIEK
Ga0325403_10464373	3300032354	Xylem	MLHVAQPGHWLGPVTGLGWLGLAQPMWAELDPAQKKNKKYKNIKK
Ga0325403_10640753	3300032354	Xylem	VLHVAQPGHWLRPVTRLGWLGLAQPIWIELGPAPKIIKKYKKIEEIEK
Ga0325403_10905201	3300032354	Xylem	SRVPSVAQPGHWFGPVTGLGWLGLAQPMRAELGPAPKT
Ga0325403_11582062	3300032354	Xylem	VVRAFAQPGHWLGPVTWLGWLGPVQPMWAELGPAPKILKKIKNKKIKKIGEIEK
Ga0325403_11647871	3300032354	Xylem	VAQPGHWFGPVTGLGWLGLAQPMWAELDPAPKITKIIKNKKIKKIEKYVCA
Ga0325403_11675651	3300032354	Xylem	VPSVAQPGHWFGPVTGLGWLGLAQPMWVELGPALKIIKNI
Ga0325401_100183711	3300032355	Xylem	VVRAFAQLSHWLGPVTGLGWLGLVQSMWAELGPTPKKMKNRKIKK
Ga0325401_100233213	3300032355	Xylem	VPRVAQPGHWLGPVTRLGRLGLAQPMWAELGPAPQIKKKEK
Ga0325401_10994071	3300032355	Xylem	VLYVAQPGHWLGPVTGLGWAGPAQPMWAELGPAPKKYIKKNRKK
Ga0325401_11118612	3300032355	Xylem	MHAVAQPGHWFGPVTGLGWLGLAQPMWAELDPAPKITKIIKNNKK
Ga0325400_10375392	3300032374	Xylem	VAQPGHWFGPVTGLGWLGLAQPIRAELGPASPKNIKNKK
Ga0325400_11654771	3300032374	Xylem	MRAVAQPGHWFGPVTGLGWLGLAQPMWAELDPAPKITKIIKNKKIKKIEKYVCA
Ga0325400_12090032	3300032374	Xylem	VAQPGHWFGPVTGLDWLGLAQPMRAELGPAPKIIKKFKKK
Ga0325405_100030123	3300032389	Xylem	MAQPGHWFMRVTGLSWLGLAQHMWAELGPAPKHKK
Ga0325405_10010091	3300032389	Xylem	VPQVAQPGHWFGPVTKLGLLGLAQPMWAELGPAPKITKIIKNIKKYKK
Ga0325405_10089723	3300032389	Xylem	VLHVAQPGHWLGPVTGLGWLGLAQPIWIELGPAPKIIKNIKKIEEIEK
Ga0325405_10149025	3300032389	Xylem	VLHVAQPGHWLGPVTGLGRLGWLGLAQPMWAELDPAQKKK
Ga0325405_10197148	3300032389	Xylem	VPLVFAQPGHWLGPVTKLGWLGLAQPMWAELGPAQKYK
Ga0325405_10199208	3300032389	Xylem	VPLVFAQPGHWVGPVTELGWLGLAQPMWAELGPAQKYK
Ga0325405_10755412	3300032389	Xylem	VLHVAQPGHWLGPVTGLGWLGLAQPIWIELGPAPKKKYKKTEK
Ga0325405_11163992	3300032389	Xylem	MRVVAQPGHWFGLVTGLGWLGLAQPVWAELDPAPKITKIIKNKKIEKIEKYVYA
Ga0325404_10050843	3300032390	Xylem	MRAVAQPGHWLGPVTGLGRLGLAQPLWAELGPAPKIIKNIKKI
Ga0325404_10131726	3300032390	Xylem	VPRVAQPGHRLGPVTRLGRLGLAQPMWAELGPAPQKK
Ga0325404_10790232	3300032390	Xylem	FNSLAQSQPGHWLGPVTGLGWLGPAQPSPCGLGPAQHSPKKIKK
Ga0325411_10503663	3300032740	Xylem	RVAPPGHWLGPVTRLGRLGLAQPMWAELGPAPQKIKNK
Ga0325414_10033983	3300032741	Leaf	VPSVAQPGHWLGPVTGLGWLGLAQPMWAKLGPTPKT
Ga0325414_10212716	3300032741	Leaf	MHAXFGSRVLHVAQPGHWFRPVTGLGWLGLAQPMRAELDPAQKKTKKLKI
Ga0325414_10237985	3300032741	Leaf	VPHVAQPGHWFRPVTGLGWLGLAQPMWVELGPAQKKKKNK
Ga0325402_10027816	3300033160	Xylem	VAQPGHWFRPVTGLGWLGLAQPMRAELDPAQKKTKKLKI
Ga0325402_10459504	3300033160	Xylem	MHAVAQPGHWLGPVTGLGQLGLAQPMWAELGPAQK
Ga0307507_104525371	3300033179	Ectomycorrhiza	VPHVAQPGHWLGPVTRLGWLGLAQPMWAELGPAQKIENIK
Ga0307510_100246606	3300033180	Ectomycorrhiza	MRAVAQPGHWLGPVTRLGRLGLAQPMWAELGLALKT
Ga0307510_100960833	3300033180	Ectomycorrhiza	MAQPGHWLGPVTGLGWLGLAQPMWAELDPAQKIIQKYKKI
Ga0307510_101500531	3300033180	Ectomycorrhiza	VLHVAQAGHWLGPVTGPGWLGLAQPMWAELDPAQKK
Ga0307510_104716841	3300033180	Ectomycorrhiza	VVRAFAQPGHWLGPVTGLGWLGLVQPMWAELGPAPKKMKNEKIKNRKNRKN
Ga0307510_104808432	3300033180	Ectomycorrhiza	MRAVAQPGHWIGPVTGLGWLGLAQPMWAELGPAQKNKK
Ga0325409_083463_3_122	3300034901	Xylem	PSVAQPGHWLGPVTGLGWLGLAQPMWVELGPALKIIKNI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F102184

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences