Metagenome / Metatranscriptome Family F102210

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102210
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	41 residues
Representative Sequence	ASSELQVIARNCDWFIALFVPVVIGRSNCFGFGFSTVI
Number of Associated Samples	10
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	7
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral (50.495 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal corpus (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.42% β-sheet: 0.00% Coil/Unstructured: 57.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF14752	RBP_receptor	1.98
PF00168	C2	1.98
PF00335	Tetraspanin	1.98
PF00620	RhoGAP	0.99
PF07524	Bromo_TP	0.99
PF10191	COG7	0.99
PF04991	LicD	0.99
PF06419	COG6	0.99
PF00687	Ribosomal_L1	0.99
PF05577	Peptidase_S28	0.99
PF00001	7tm_1	0.99
PF12946	EGF_MSP1_1	0.99
PF13540	RCC1_2	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0081	Ribosomal protein L1	Translation, ribosomal structure and biogenesis [J]	0.99
COG3475	Phosphorylcholine metabolism protein LicD	Lipid transport and metabolism [I]	0.99

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Invertebrates	Host-Associated → Invertebrates	100.00%

Habitat	Taxonomy	Distribution
Cnidaria	Host-Associated → Invertebrates → Cnidaria	100.00%

Habitat	Taxonomy	Distribution
Coral	Host-Associated → Invertebrates → Cnidaria → Coral	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Coral	Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral	50.50%
Coral	Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral	44.55%
Coral Tissue	Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral Tissue	4.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300013948	Coral microbial communities from a home aquarium in Belgium - AM-T0-control A	Host-Associated	Open in IMG/M
3300022595	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T2 (Eukaryote Community Metatranscriptome)	Host-Associated	Open in IMG/M
3300022596	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T1 (Eukaryote Community Metatranscriptome)	Host-Associated	Open in IMG/M
3300022597	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T3 (Eukaryote Community Metatranscriptome)	Host-Associated	Open in IMG/M
3300022598	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C1 (Eukaryote Community Metatranscriptome)	Host-Associated	Open in IMG/M
3300022599	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C2 (Eukaryote Community Metatranscriptome)	Host-Associated	Open in IMG/M
3300022600	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C3 (Eukaryote Community Metatranscriptome)	Host-Associated	Open in IMG/M
3300027103	APAL control metatranscriptome co-assembly	Host-Associated	Open in IMG/M
3300027264	APAL treatment metatranscriptome co-assembly	Host-Associated	Open in IMG/M
3300027507	APAL treatment+control metatranscriptome co-assembly	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0116699_10129461	3300013948	Coral Tissue	LVALSKLKVNVRNSDWFIALFAPVVIGLSNNFGFGFSTVI*
Ga0116699_10229921	3300013948	Coral Tissue	SSELQVIVKNCDWFIALPAPVIGRSNCFGFGFSTLI*
Ga0116699_10368291	3300013948	Coral Tissue	TLHFSRALSELQVIARNCDWFIALFAPAVIGRSNCFGFGFSTVI*
Ga0116699_10656342	3300013948	Coral Tissue	RDFFRVSSELQLIAKNCDWFIALSAAVVIGRSNYFGFGFSTVI*
Ga0116699_10946832	3300013948	Coral Tissue	MRDFSRALNWLREISRNSDWFIALFVLVVIGGSNYFEVGFSLGVNNT*
Ga0215184_10065101	3300022595	Coral	CTRDFSRASSELQVIARNCDWFIALFVPVVIGRSDCFGFGFPTVI
Ga0215184_11163972	3300022595	Coral	VAPGTRDFSRAVSELQRIARNCDWLIVLFVPVVIGRNDYFGFGFSTVI
Ga0215184_11271361	3300022595	Coral	TRDFYRASSELQVIARNCDWFIALAAPVVIGRSNCFGFGFSTVI
Ga0215184_11504411	3300022595	Coral	HFSRALSELQVIARNCDWFIALFAPAVIGRSNCFGFRFSTVI
Ga0215184_11615242	3300022595	Coral	RVLSEVQVIARNCDWSIALFAPIVIGRSNPFGFGFSTVI
Ga0215184_12213321	3300022595	Coral	SDFRLSKSQVIARHFDWFIELFVLVVVGRSNCFGFGFSTVI
Ga0215184_12236021	3300022595	Coral	SSELQVIAKNCDWFIALPAPVVIVQSNCFGFGFSTVI
Ga0215183_10252812	3300022596	Coral	ELQVIARNCDWFIALFVPVVIGRSYCFGFGFSTVI
Ga0215183_10268863	3300022596	Coral	FSRALSELQIIARNCDWFIVLFAPVVIGRNNCFGFGFSTVV
Ga0215183_11097782	3300022596	Coral	SELQVIARNCDWFIALFAPVVIGRSNCFGFGFSTVI
Ga0215183_11496021	3300022596	Coral	RDFSRASSELHVIARNCDWFIALSAPVVIGRSNCFGFGFSTVI
Ga0215183_11788701	3300022596	Coral	ELHVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215183_11799461	3300022596	Coral	ELQVIARNCDWFIALPAPVVIGRSNCFDFGFSTVI
Ga0215183_12027851	3300022596	Coral	ASSGLQVIARNCDWFIALPAPVVIGRSNCFGFGFPIVI
Ga0215185_10307701	3300022597	Coral	FSRALSKFQIIARNCDWFIALFAPVVIGRSNCFGFGYLTVI
Ga0215185_10911941	3300022597	Coral	KPKPIAPCTRDFSRVSSELQVIARNYDWFMELFVPVVIGQSNCFGFGFLTVIRKPL
Ga0215185_11403071	3300022597	Coral	RGSSHASSELQVIVRNCDWFIALFAPVVIGRNNCFGCGFSTVI
Ga0215180_10073601	3300022598	Coral	ELHVIARNSDWFMALFVPVVIGQSDYLGFGFSTVISKPLYC
Ga0215180_10233951	3300022598	Coral	SELQVIVSNCDWFIALFAPVVIGRSNCFGFGFSTVI
Ga0215180_10285511	3300022598	Coral	RDFSRASSELQVIARNYDWFISLPAPIVIGRSNCFGFGFATVI
Ga0215180_10336972	3300022598	Coral	RQFFNRDFSRASSELQVIARNYDWFIALSAHVVIGRSNCFGFGFSTVI
Ga0215180_10478421	3300022598	Coral	ASSELHVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215180_10601132	3300022598	Coral	FSRASSELQVIARNCDWSMELFVPVVIGQSNCFGFGFSTVI
Ga0215180_10630292	3300022598	Coral	MRNRKQKPIATCTRDFSRPLSNLQVIAKNSDWFIALFAPLVIGLRYYLGFGFSTVI
Ga0215180_11055672	3300022598	Coral	RALSELQIIARNCDWFIALFAPVVIGRSDCYGFGFSTVI
Ga0215180_11224621	3300022598	Coral	KLQVIARNCDWFIALFVAVVIGRSNCFGFGFGFWTVI
Ga0215180_11262851	3300022598	Coral	SELQVIARNCDWFMALFVPVVIGRSYCFGFGFSTVI
Ga0215180_11520011	3300022598	Coral	RASSELQVIARNCDWFMALFVPVVIGRSNCFGFGFSTVI
Ga0215180_11889641	3300022598	Coral	DELQIIARNYDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215180_12564591	3300022598	Coral	ATAMAPFTRDFSRALSNLQIMARNSDWFTALFTPVVIGRSYYFGIDFSTAI
Ga0215180_12569761	3300022598	Coral	CTRDFSRASSELQVIARNCDWFIALFVPVVIGRSYCFGFGFPTVI
Ga0215181_10223594	3300022599	Coral	CTSSKLQVIARNCDWFMALFVPVVIGQSNCFGFGFSIVI
Ga0215181_10356211	3300022599	Coral	SELQLIARNCDWFMALFVPVVIGRSNCFGFGFSTVI
Ga0215181_10396671	3300022599	Coral	AAIYEKGLCTRDFSRASSELQVIAGNCDWFIALFVPVVIGWSNCFGFGFTTVI
Ga0215181_10818751	3300022599	Coral	DFSRASSELQVIARDSDWFIALSTPVVIGQSNCFGFGFSTVI
Ga0215181_11184431	3300022599	Coral	SELQVIPRNCDWFIALSAPVVIGRSNYFFGFGFSTVI
Ga0215181_11228831	3300022599	Coral	RDFSRAFSKFQMIARNCDWFIALFVPVVIGRSNCFGFGFSTVI
Ga0215181_11284051	3300022599	Coral	RASSELQVIAKNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215181_11384872	3300022599	Coral	ARDFSRASSELQVIARNCDWFMALFVPVVIGRSYCFGFGFSTVI
Ga0215181_11707013	3300022599	Coral	ASSELQVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215182_10356303	3300022600	Coral	SSELQVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215182_11149861	3300022600	Coral	ASSELQVIARNSDWFMALFVPFVIGQSDYFGFGFSTVI
Ga0215182_11290721	3300022600	Coral	PCTRDFSRASSELQVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215182_11715371	3300022600	Coral	ELQVIARNCDWFIALFVPVVIGRSNCFGFGFSTVI
Ga0215182_12040241	3300022600	Coral	KPIAPRTRDFYRGLSELQIIARNCDWFIVLFAPVVIGRNNCFGFGFSTVV
Ga0255581_10042191	3300027103	Coral	RDFSRASSELQVIARNCDWFIAPFVPLVIGRSNCFGFGFSTVI
Ga0255581_10150312	3300027103	Coral	MVHGDFSRASSELQVIARNCDWFIALFVPVVIGRSNCFGFGFATVI
Ga0255581_10245571	3300027103	Coral	EFQVIARNYDWFIALSAPVMIGWSNCFGFGFLTVI
Ga0255581_10381632	3300027103	Coral	GALSKLQVIARNCDWFIALFAPVVIGPSNCFGFGFSTVI
Ga0255581_10728471	3300027103	Coral	AKPKPIARCTRDFSRASSELQVIARNCDWFIALFVPVVIGRSDCFGFGFPTVI
Ga0255581_10925711	3300027103	Coral	RDFSRAWSELQVIARNCDWFTALFVPVVIGRSNCFG
Ga0255581_11008181	3300027103	Coral	ISRASGELQVIARNCDWFTELFVPVVIGRSNCFGFGFSTVI
Ga0255581_11084111	3300027103	Coral	TSELQVIARNCDWFMALFVPVVIDRSNCFGFGFSTVI
Ga0255581_11143041	3300027103	Coral	RGFSRASSELQVIARNCDWSMELFVPVVIGQSNCFGFGFSTVI
Ga0255581_11152901	3300027103	Coral	TRDFSRASSELQVIARNSDWFMALFVPVVIGQSDYFGFGSSTVI
Ga0255581_11200221	3300027103	Coral	KLQVIARNRDWFMALFVPVVIGRSNCFAFGFSTVI
Ga0255581_11243402	3300027103	Coral	TRDFSRALSELQIIARNCDWFIVLFVPVVIGRNNFFGFDFSTVI
Ga0255581_11279482	3300027103	Coral	DFSRASSELQVIARNCDWFIALFVPVVIGRSNCFGFGF
Ga0255581_11297292	3300027103	Coral	CFEKVTCIITRNYDWFIALVAPVVIGRSNDFGIGFWTVI
Ga0255581_11329421	3300027103	Coral	RALNELQVIARNCEWFIALFAPAVIGRSNCFGFGFSTVI
Ga0255581_11349822	3300027103	Coral	SELQVIARNCDWFITLFAPVVIGRSNCFGFGFSTVI
Ga0255581_11379391	3300027103	Coral	RASRELQVIARNCDWFIALFVPVVIGRNNCFGFGFSTVI
Ga0255581_11429481	3300027103	Coral	HFSRASSELQVLARNCDWFIALSAPVVIGRSNRLGFGFSTVI
Ga0255581_11684171	3300027103	Coral	ELQVIAGNCDWFIALPAPIVIGRSHCFGLGFSTVI
Ga0255581_11707121	3300027103	Coral	RYFSCVFSKLQEIPGNSDWFIALFTPVVIGRSNYFGIGFSMVI
Ga0255581_11840221	3300027103	Coral	TRDFSRASGELQVIGRNFDWFMELFVPVVIGRSNCFGLGFSPVI
Ga0255580_10070171	3300027264	Coral	TKTDRTMSHDFSRDTSELQVIARNCDWFIALPAPLVIGRSNCFGFDFSTVI
Ga0255580_10093671	3300027264	Coral	IAPCTRDFSRASSELQVIARNCDWFIALFVPVVIGRSYCFGFGFPTVI
Ga0255580_10169331	3300027264	Coral	SELQVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0255580_10501971	3300027264	Coral	ASSELQVIARNCDWFIALFVPVVIGRSNCFGFGFSTVI
Ga0255580_10573171	3300027264	Coral	SELHVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0255580_10600771	3300027264	Coral	SGELQVIARNCDWFIALFVPIVIGRSNCFGFGFSTVILKPL
Ga0255580_10624441	3300027264	Coral	MYAXFFRASSEFQVIARNSDWFMTLFAPVVIGQSDYFGFGFSTVIXK
Ga0255580_10880721	3300027264	Coral	AIYEKGLCTRDFSRASSELQVIAGNCDWFIALFVPVVIGWSNCFGFGFTTVI
Ga0255580_11008801	3300027264	Coral	SELQVIARNCDWFITLPAPVAIGRNNCFGFRFSTVI
Ga0255580_11285411	3300027264	Coral	MRDFSRALSKFQIIARNCYWFIALFVPVVIGRSNCFGFSTVI
Ga0255580_11291961	3300027264	Coral	LSELQAIARNCDWFIALPAPAVIGQSNCFGFGFLTVI
Ga0255580_11296771	3300027264	Coral	RTLHFSRALSELQVIARNCDWFIALFAPAVIGRSNCFGFRFSTVI
Ga0255580_11378901	3300027264	Coral	MPTKFYFSRALNKSQLISKNSDWFMALFAPAVIGRSNCFGIGFSTVT
Ga0255580_11882591	3300027264	Coral	ALSKLHVMASNSDWFIALFAPAVIGCSNHFGIVFLQVI
Ga0255582_10115785	3300027507	Coral	ENQNQNQSHNDFSRASSELQVIATICDWFITLPPPVVIGRSNCFGSGFSTVI
Ga0255582_10311613	3300027507	Coral	DFSRASSELLIIGRNCDWFIVLFVPVVIGRNNCFGFGFSTVI
Ga0255582_10434091	3300027507	Coral	SKLQVIARSSDWLIALFAPAVIGPINNFGVGFSTAI
Ga0255582_10504981	3300027507	Coral	RASSELQLIVRNCDWFIALSAAVVIGRSNCFGFGFSTVI
Ga0255582_10618131	3300027507	Coral	MHGFSGALSKLQVIAGNSDWLIELFAPAVIGRSNYFGIGFSMEL
Ga0255582_10654212	3300027507	Coral	GELQMIARICDWFIALLVPVVIGRSNCFGFGFSTVI
Ga0255582_10878821	3300027507	Coral	THDFSCASEGLQVIARNCDWFMELFVPVVIGRSNCFGFGFSTVI
Ga0255582_10885911	3300027507	Coral	PIANFSRVLSKLKEIARNSDYFIALPAPAAISRSNQFGIGFSTVI
Ga0255582_11185721	3300027507	Coral	APCTRDFSRVSSELQVIPRNCDWFIALFVLVVIGRSNCFACGFSTVI
Ga0255582_11267731	3300027507	Coral	RLPVIATNSDWFIALFAHVVIGRSNSFSIGFTTYVLKPF
Ga0255582_11305541	3300027507	Coral	SELQVIARNCDWFIALFVPVVIGRCNCFGFGFSTVI
Ga0255582_11404122	3300027507	Coral	FHFPTNAEPPCTRGFSHASSELQVIAGSCGWFVALPAPVVVGRSDCFGFGFSTVI
Ga0255582_11572791	3300027507	Coral	EFQVIARNSDWFMALFVPVVIGQSDYFGFGSSTVI
Ga0255582_11764551	3300027507	Coral	SELQVIARNYDWFIALAAPVVIGRSNCFGFGFSTVI
Ga0255582_12029731	3300027507	Coral	PRTRDFSRALSELQIIARNCDWFIVLFGRNNCFGFGFSTVV
Ga0255582_12206971	3300027507	Coral	SELQVIARNCDWFIALFAPVVIGRSNCSGFGFSTVI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102210

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences