Metagenome / Metatranscriptome Family F102574

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102574
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	53 residues
Representative Sequence	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVSDNTE
Number of Associated Samples	54
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	35.48 %
% of genes near scaffold ends (potentially truncated)	7.92 %
% of genes from short scaffolds (< 2000 bps)	20.79 %
Associated GOLD sequencing projects	47
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (86.139 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (65.346 % of family members)
Environment Ontology (ENVO)	Unclassified (65.347 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (98.020 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.44% β-sheet: 0.00% Coil/Unstructured: 47.56%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF14099	Polysacc_lyase	1.00
PF00984	UDPG_MGDP_dh	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	1.00
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	1.00

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.14 %
All Organisms	root	All Organisms	13.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.14 %
Viruses	superkingdom	All Organisms → Viruses	7.92 %
cellular organisms	root	All Organisms → cellular organisms	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.92 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.92 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	3.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.92 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	3.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.92 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005837\|Ga0078893_10030701	All Organisms → Viruses → Predicted Viral	2801	Open in IMG/M
3300007541\|Ga0099848_1043509	All Organisms → Viruses → Predicted Viral	1830	Open in IMG/M
3300012920\|Ga0160423_10016794	All Organisms → cellular organisms → Bacteria	5548	Open in IMG/M
3300012920\|Ga0160423_10084967	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2249	Open in IMG/M
3300012920\|Ga0160423_10119056	All Organisms → Viruses → Predicted Viral	1861	Open in IMG/M
3300012928\|Ga0163110_10090412	All Organisms → Viruses → Predicted Viral	2023	Open in IMG/M
3300016787\|Ga0182080_1709408	Not Available	731	Open in IMG/M
3300017949\|Ga0181584_10067228	All Organisms → Viruses → Predicted Viral	2497	Open in IMG/M
3300017952\|Ga0181583_10088848	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2129	Open in IMG/M
3300017956\|Ga0181580_10464610	Not Available	832	Open in IMG/M
3300017956\|Ga0181580_10765289	Not Available	610	Open in IMG/M
3300017956\|Ga0181580_10814001	Not Available	587	Open in IMG/M
3300017958\|Ga0181582_10919217	Not Available	513	Open in IMG/M
3300017964\|Ga0181589_10472304	Not Available	815	Open in IMG/M
3300017964\|Ga0181589_10705786	Not Available	632	Open in IMG/M
3300017969\|Ga0181585_10229722	All Organisms → Viruses → Predicted Viral	1317	Open in IMG/M
3300018039\|Ga0181579_10248808	Not Available	1018	Open in IMG/M
3300018049\|Ga0181572_10586440	Not Available	679	Open in IMG/M
3300018417\|Ga0181558_10274292	Not Available	931	Open in IMG/M
3300018421\|Ga0181592_10276405	Not Available	1223	Open in IMG/M
3300018421\|Ga0181592_10336587	Not Available	1082	Open in IMG/M
3300018421\|Ga0181592_10754064	Not Available	645	Open in IMG/M
3300018424\|Ga0181591_10870299	Not Available	620	Open in IMG/M
3300020168\|Ga0181588_10299378	Not Available	662	Open in IMG/M
3300020189\|Ga0181578_10306998	Not Available	729	Open in IMG/M
3300020377\|Ga0211647_10090092	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1065	Open in IMG/M
3300020403\|Ga0211532_10027596	All Organisms → Viruses → Predicted Viral	2979	Open in IMG/M
3300020442\|Ga0211559_10030373	All Organisms → Viruses → Predicted Viral	2703	Open in IMG/M
3300020446\|Ga0211574_10005848	All Organisms → cellular organisms → Bacteria	6161	Open in IMG/M
3300021379\|Ga0213864_10307126	Not Available	805	Open in IMG/M
3300026189\|Ga0208405_1004710	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2277	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.01%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.99%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	65.35%
Oceanic	Environmental → Aquatic → Marine → Oceanic	12.87%
Unclassified	Environmental → Aquatic → Marine → Unclassified	12.87%
Coastal	Environmental → Aquatic → Marine → Coastal	7.92%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.99%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	65.35%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	12.87%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	7.92%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	7.92%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	3.96%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.99%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.99%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	65.35%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	12.87%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	6.93%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.95%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	3.96%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.99%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.99%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.99%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.99%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.99%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005608	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental	Open in IMG/M
3300010148	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG	Environmental	Open in IMG/M
3300010368	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA	Environmental	Open in IMG/M
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300013253	Marine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station4_GOM_Metagenome	Environmental	Open in IMG/M
3300016747	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071409BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016787	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071411AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017952	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017958	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017962	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017964	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017968	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017969	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017991	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaG	Environmental	Open in IMG/M
3300018039	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018049	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018417	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018418	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018423	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018428	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019267	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071402VT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020054	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413BT metaG (spades assembly)	Environmental	Open in IMG/M
3300020168	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409BT metaG (spades assembly)	Environmental	Open in IMG/M
3300020189	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071401CT metaG (spades assembly)	Environmental	Open in IMG/M
3300020377	Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)	Environmental	Open in IMG/M
3300020392	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)	Environmental	Open in IMG/M
3300020400	Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300020442	Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)	Environmental	Open in IMG/M
3300020446	Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)	Environmental	Open in IMG/M
3300020450	Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)	Environmental	Open in IMG/M
3300020457	Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)	Environmental	Open in IMG/M
3300021379	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247	Environmental	Open in IMG/M
3300022176	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)	Environmental	Open in IMG/M
3300022914	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG	Environmental	Open in IMG/M
3300023084	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG	Environmental	Open in IMG/M
3300023117	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG	Environmental	Open in IMG/M
3300023180	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG	Environmental	Open in IMG/M
3300025674	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300026189	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84A (SPAdes)	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066840_100151173	3300005608	Marine	MLNKIMNKITHYFLHRAYAQMQVADKQGIVYLHEDNVADFCDDYWSTFVSEENKQ*
Ga0078893_100307014	3300005837	Marine Surface Water	MLTQLLNKLTHYFLHRAFAQMERAEQEGTVSTATDDVADFMDDYYTYFVRSDNDED*
Ga0099849_10543323	3300007539	Aqueous	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFIDDYWSTFVRSENDND*
Ga0099848_10435094	3300007541	Aqueous	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVRSENDND*
Ga0098043_10450584	3300010148	Marine	MLNKLLNKLTHLFLSRAYAQMQTANEQDIVYFNEDKVADFCDDYYTTFIEENK*
Ga0129324_101734873	3300010368	Freshwater To Marine Saline Gradient	MFAHALNKLTHYFLHRAWMQMQAADEQGIVATATDDVADFIDDYWSNFVSDRTERSH*
Ga0160422_105614882	3300012919	Seawater	GRDNMLNKLLNKLTHYFLGRAYAQMQTADEQGTVSMHEDTVADFCDDYWSTFVSQDADHLDTH*
Ga0160423_1001679410	3300012920	Surface Seawater	MLNKILNKITHYFLHRAYAQMQVADKQGIVYLHEDNVADFCDDYWSTFVSEENKQ*
Ga0160423_100849672	3300012920	Surface Seawater	MLNRLLNKLTHYFLSRAYKQMQVADSKGIVYLHEDNAADFCDDYWSTFVRKDNEY*
Ga0160423_101190564	3300012920	Surface Seawater	MLNKLLNKLTHYFLHRAFAQMQVAQQQNVVSTANDDVADFCDDYWTYFVRSDND*
Ga0163110_100904124	3300012928	Surface Seawater	MLNKLLNKLTHLFLSRAYKQMQVANEQNIVYYNEDKVADFCDDYYTTFVEENK*
Ga0163110_102430353	3300012928	Surface Seawater	MLNKLLNKLTHYFLGRAYAQMQTADEQGTVSMHEDTVADFCDDYWSTFVSRDADDLDTD*
Ga0163109_100915611	3300012936	Surface Seawater	KGRHNMLNRLLNKLTHYFLSRAYKQMQVADSKGIVYLHEDNAADFCDDYWSTFVRKDNEY
Ga0163109_113930171	3300012936	Surface Seawater	THYFLSRAYAQMQVAQQQNVVSYNEDKVADFCDDYYTNFVEENN*
Ga0116813_10406072	3300013253	Marine	MLNKLLNKLTHYFLHRAWIQMQVADEQGVVATANDDVADFMDDYYTYFVRSEHEED*
Ga0182078_100833122	3300016747	Salt Marsh	MFTHALNKITHYFLHRAWTQMQAADEQGIVATATDDVADFMDDYWSYFVRSENDTD
Ga0182078_104417662	3300016747	Salt Marsh	MLTHILNKITHYFLHRAWQQMQAADEQGIVDTVTDDVADFMDDYWSNFVSDNTE
Ga0182078_108012812	3300016747	Salt Marsh	MLNTLLNKLTHYFLHRAWMQMQAADEQGIVATATDDVADFMDDYWSYFVSDN
Ga0182080_17094082	3300016787	Salt Marsh	MFTHILNKITHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSNFVRSENDTD
Ga0181565_103848951	3300017818	Salt Marsh	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDY
Ga0181565_106586431	3300017818	Salt Marsh	MFTHILNKITHYFLHRAWTQMQAADEQGIVATATDDVADFMDDYWTYFVSDNTE
Ga0181584_100672284	3300017949	Salt Marsh	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVRSEHEED
Ga0181584_105642062	3300017949	Salt Marsh	MINTLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFIDDYWSYFVSDNTE
Ga0181583_100888482	3300017952	Salt Marsh	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVRSENDND
Ga0181583_104028682	3300017952	Salt Marsh	MFAHILNKITHYFLHRAWQQMQAADAQGIVATATDDVADFMDDYW
Ga0181583_104274002	3300017952	Salt Marsh	MFTHILNKITHYFLHRAWTQMQAADEQGIVATATDDVADFMDDYWSNFVSDNTE
Ga0181583_105233662	3300017952	Salt Marsh	MINTLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVRSEHEED
Ga0181580_104646103	3300017956	Salt Marsh	MFTHILNKITHYFLHRAWMQMQAADEQGIVATATDDVADFMDDYWSNFV
Ga0181580_105410372	3300017956	Salt Marsh	MINTLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVSDNTE
Ga0181580_107652892	3300017956	Salt Marsh	MLNTLLNKLTHYFLHRAWMQMQAADEQGIVATATDDVADFMDDYWSYFVR
Ga0181580_108140011	3300017956	Salt Marsh	EVEMFTHILNKITHYFLHRAWMQMQAADEQGIVATATDDVADFMDDYWSYFVRSENDND
Ga0181580_109822112	3300017956	Salt Marsh	MFTHALNKITHYFLHRAWQQMQAADAQGIVDTVTDDVADFMDDYWSNFVSDRTE
Ga0181582_101670042	3300017958	Salt Marsh	MFAHILNKITHYFLHRAWQQMQAADEQGIVATATDDVADFMVDYWSNFVSDRTE
Ga0181582_103379241	3300017958	Salt Marsh	TGGRMFTHILNKITHYFLHRAWQQMQAADAQGIVATATDDVADFMDDYWSNFVSTDE
Ga0181582_107561441	3300017958	Salt Marsh	HILNKITHYFLHRAWQQMQAADEQGIVATATDDVADFMDDYWSYFVSDNTE
Ga0181582_109192172	3300017958	Salt Marsh	THYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVRSDNDRD
Ga0181582_109492632	3300017958	Salt Marsh	YFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVRSENDND
Ga0181581_101045434	3300017962	Salt Marsh	MFAHALNKLTHYFLHRAWQQMQAADAQGIVATATDDVADFMDDYWSNF
Ga0181589_101912624	3300017964	Salt Marsh	MLTHILNKITHYFLHRAWIQMQAADEQGIVATATDDVADFMDDYWSNFVSDNTE
Ga0181589_104723041	3300017964	Salt Marsh	MLNTLLNKLTHYFLHRAWMQMQAADEQGIVATATDDVADFMDDYWSYFVRSDNDRD
Ga0181589_107057861	3300017964	Salt Marsh	MFTHILNKITHYFLHRAWQQMQAADEQGIVATATDDVADFMDDYWSNFV
Ga0181589_109132501	3300017964	Salt Marsh	MFAHILNKITHYFLHRAWQQMQSADEQGIVATATDDVADFMDDYWSNFVSDRTE
Ga0181590_106028183	3300017967	Salt Marsh	MLNTLLNKLTHYFLHRAWMQMQAADEQGIVATATDDVADFMDDYWSYFVSDNTE
Ga0181590_106029852	3300017967	Salt Marsh	MFAHALNKLTHYFLHRAWQQMQAADEQGIVATATDDVADFIDDYWSNFVSDRTE
Ga0181590_111419531	3300017967	Salt Marsh	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVSDNTE
Ga0181587_102185564	3300017968	Salt Marsh	MLNKLLNKLTHYFLHRAWRQMQVADEQGIVSTANDDVADFMDDYWSYFVRSEHEED
Ga0181587_103023313	3300017968	Salt Marsh	MFAHILNKITHYFLHRAWQQMQAADAQGIVATATDDVADFMDDYWSNFVSDRTE
Ga0181587_105436942	3300017968	Salt Marsh	MFAHALNKLTHYFLHRAWQQMQAADEQGIVATATDDVADFMDDYWS
Ga0181585_102297223	3300017969	Salt Marsh	MFTHILNKITHYFLHTAWTQMQAADEQGIVATATDDVADFMDDYWSNFVRSENDTD
Ga0180434_106555382	3300017991	Hypersaline Lake Sediment	MLTHILNKITHYFLHRAWEQMQAADEQGIVATATDDVADFMDDYWSNFVSDDTE
Ga0181579_101429344	3300018039	Salt Marsh	HYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVRSENDND
Ga0181579_101653981	3300018039	Salt Marsh	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVRS
Ga0181579_102488081	3300018039	Salt Marsh	MFTHILNKITHYFLHRAWIQMQAADEQGIVATATDDVADFMDDYWSYFVRSENDTD
Ga0181579_105208451	3300018039	Salt Marsh	MFTHILNKITHYFLHRAWQQMQAADEQGIVATATDDVADFMDDYWSYFVSDNTE
Ga0181572_105864402	3300018049	Salt Marsh	MLTHILNKITHYFLHRAWQQMQAADAQGIVATATDDVADFMDDYWSNFVSKE
Ga0181558_102742921	3300018417	Salt Marsh	MFTHILNKITHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSNFVSDNTE
Ga0181567_106144272	3300018418	Salt Marsh	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFIDNYWSNFVSDRTE
Ga0181567_106144273	3300018418	Salt Marsh	MFAHILNKITHYFLHRAWQQMQAADAQGIVATATDDVADFMDDYWSNFVSDNTE
Ga0181592_102764054	3300018421	Salt Marsh	MFTHILNKITHYFLHRAWEQMQAADEQGIVATATDDVADFMDDYWSNFVRSDNDTD
Ga0181592_103365871	3300018421	Salt Marsh	MFTHILNKITHYFLHRAWTQMQAADEQGIVATATDDVADFMDDYWSNF
Ga0181592_107540641	3300018421	Salt Marsh	MLTHILNKITHYFLHRAWIQMQAADEQGIVATATDDVADFMDDYWSNF
Ga0181593_103611124	3300018423	Salt Marsh	HNNKEVEMFTHILNKITHYFLHRAWQQMQAADEQGIVATATDDVADFMDDYWSNFVSDNT
Ga0181593_110252331	3300018423	Salt Marsh	LTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVRSENDND
Ga0181591_103949081	3300018424	Salt Marsh	MFAHILNKITHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSN
Ga0181591_106767691	3300018424	Salt Marsh	HYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVRSEHEED
Ga0181591_108702992	3300018424	Salt Marsh	MFTHILNKITHYFLHRAWTQMQAADEQGIVATATDDVADFMDDYWS
Ga0181591_108709142	3300018424	Salt Marsh	MFNTLLNKLTHYFLHRAWMQMQAADEQGIVATATDDVADFMDDYWSYFVSDNTE
Ga0181568_112943781	3300018428	Salt Marsh	MFTHILNKITHYFLHRAWEQMQAADKQGIVATATDDVADFMDDYWSNFVSDNTE
Ga0182069_14419473	3300019267	Salt Marsh	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFIDDYWSYFVSDNTE
Ga0181594_100996251	3300020054	Salt Marsh	KMINTLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFIDDYWSYFVSDNTE
Ga0181588_102993782	3300020168	Salt Marsh	MFTHALNKITHYFLHRAWQQMQAADEQGIVATATDDVADFMDDYWSNFVNDNTE
Ga0181588_103057142	3300020168	Salt Marsh	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVRSDNDRD
Ga0181578_103069981	3300020189	Salt Marsh	MFTHILNKITHYFLHRAWTQMQAADEQGIVATATDDVADFMDDYWSYFVSDNTE
Ga0211647_100900921	3300020377	Marine	MLNRLLNKLTHYFLSRAYAQMQVAQQQNVVSYNEDKVADFCDDYYTNFVEENN
Ga0211647_101335433	3300020377	Marine	GRHNMLNRLLNKLTHYFLSRAYKQMQVADSKGIVYLHEDNAADFCDDYWSTFVRKDNEY
Ga0211647_101672891	3300020377	Marine	MLNKLLNKLTHLFLSRAYAQMQTANEQDIVYFNEDKVADFCDDYYTTFIEENK
Ga0211666_102069863	3300020392	Marine	KQQGSNNMLNKLLNKLTHLFLSRAYKQMQVANEQNIVYYNEDKVADFCDDYYTTFVEENK
Ga0211636_103147681	3300020400	Marine	MLNKLLNKLTHYFLGRAYAQMQTADAQGTVSMHEDTVADFCDDYWSTFVSRDADDLDTD
Ga0211532_100275965	3300020403	Marine	MLNKLLNKLTHYFLGRAYAQMQTANEQGIVYYNEDKVADFCDDYYTTFVEESN
Ga0211559_100303734	3300020442	Marine	MLNKVLNKITHYFLHRAYAQMQVADKQGIVYLHEDNVADFCDDYWSTFVSEENKQ
Ga0211559_102932422	3300020442	Marine	MLNKLLNKLTHYFLHRAFAQMQVAQQQNVVSTANDDVADFCDDYWTYFVRSDND
Ga0211574_100058483	3300020446	Marine	MLNKILNKITHYFLHRAYAQMQVADKQGIVYLHEDNVADFCDDYWSTFVSEENKQ
Ga0211574_103263531	3300020446	Marine	MLNRLLNKLTHYFLSRAYKQMQVADSKGIVYLHEDNAADFCDDY
Ga0211641_101069911	3300020450	Marine	MLNKLLNKLTHLFLSRAYAQMQTANEQDIVYFNEDKVADFCDDYYTTFIEE
Ga0211641_101794951	3300020450	Marine	LNKLTHLFLSRAYKQMQVANEQNIVYYNEDKVADFCDDYYTTFVEENK
Ga0211643_101133814	3300020457	Marine	MLNKLLNKLTHYFLSRAYKQMQVADSKGIVYLHEDNAADFCDDYYTTFIEENK
Ga0213864_103071263	3300021379	Seawater	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVRSDNDND
Ga0212031_10517761	3300022176	Aqueous	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFIDDYWSFFVRSENDND
Ga0255767_10654251	3300022914	Salt Marsh	MFAHILNKITHYFLHRAWQQMQAADEQGIVATATDDVADFMDDYWSNFVSDNTE
Ga0255767_13497321	3300022914	Salt Marsh	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVRSE
Ga0255778_101455621	3300023084	Salt Marsh	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVSDNT
Ga0255757_100692856	3300023117	Salt Marsh	GAKMINTLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFIDDYWSYFVSDNTE
Ga0255757_104344082	3300023117	Salt Marsh	KITHYFLHRAWTQMQAADEQGIVATATDDVADFMDDYWSNFVRSENDTD
Ga0255768_100847901	3300023180	Salt Marsh	GRMFTHALNKITHYFLHRAWQQMQAADEQGIVATATDDVADFMDDYWSNFVSDRTE
Ga0255768_104046203	3300023180	Salt Marsh	MINTLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFIDDYWSYF
Ga0255768_104331472	3300023180	Salt Marsh	MFAHILNKITHYFLHRAWMQMQAADEQGIVATATDDVADFMDDYWSYFVSDNTE
Ga0255768_104622781	3300023180	Salt Marsh	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYW
Ga0208162_11831062	3300025674	Aqueous	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFIDDY
Ga0208019_11919482	3300025687	Aqueous	MINKLLNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFIDDYWSTFVRSENDND
Ga0208405_10047105	3300026189	Marine	MLNKIMNKITHYFLHRAYAQMQVADKQGIVYLHEDNVADFCDDYWSTFVSEENKQ
Ga0209536_1029001281	3300027917	Marine Sediment	MFTHALNKLTHYFLHRAWMQMQVADEQGIVATATDDVADFMDDYWSYFVSDNTE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102574

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences