Metagenome / Metatranscriptome Family F102642

Basic Information
Family ID	F102642
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	58 residues
Representative Sequence	MTLAVFGNEGLLNERRRKAGQREHSIREGHDVWAGRVKTFRHVGDVEKGTAGL
Number of Associated Samples	83
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	4.95 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.19

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.871 % of family members)
Environment Ontology (ENVO)	Unclassified (18.812 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (28.713 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.94% β-sheet: 0.00% Coil/Unstructured: 95.06%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00665	rve	0.99
PF00203	Ribosomal_S19	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0185	Ribosomal protein S19	Translation, ribosomal structure and biogenesis [J]	0.99
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.99
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.99
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.99
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.99

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300004785\|Ga0058858_1008379	Not Available	683	Open in IMG/M
3300004799\|Ga0058863_10071445	Not Available	796	Open in IMG/M
3300010154\|Ga0127503_10250568	Not Available	796	Open in IMG/M
3300020070\|Ga0206356_11736149	Not Available	801	Open in IMG/M
3300031093\|Ga0308197_10119122	Not Available	808	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.10%
Host-Associated	Host-Associated	9.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.50%
Aquatic	Environmental → Aquatic	40.59%
Human	Host-Associated → Human	4.95%
Plants	Host-Associated → Plants	4.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.50%
Freshwater	Environmental → Aquatic → Freshwater	37.62%
Digestive System	Host-Associated → Human → Digestive System	4.95%
Marine	Environmental → Aquatic → Marine	2.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.55%
Sediment	Environmental → Aquatic → Freshwater → Sediment	20.79%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	6.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	5.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.95%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	4.95%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.97%
Creek	Environmental → Aquatic → Freshwater → Creek	1.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.98%
Lake	Environmental → Aquatic → Freshwater → Lake	0.99%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.73%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	20.79%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	10.89%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	6.93%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.95%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.95%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	4.95%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	1.98%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.99%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	11.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	10.89%
River Water	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water	6.93%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	5.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.94%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.95%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	4.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.96%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.97%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	2.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.97%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	1.98%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	1.98%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.98%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.99%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.99%
Wetland	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland	0.99%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.99%
Subtropical Soil	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Subtropical Soil	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2222084002	Subtropical soil microbial communities from Bundaberg Australia-sugarcane farm	Environmental	Open in IMG/M
3300002864	Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_7 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003288	Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_44 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004564	Freshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metatranscriptome 8_HOW4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004785	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300006937	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A01 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300007219	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2013 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009235	Microbial communities of water from Amazon river, Brazil - RCM10	Environmental	Open in IMG/M
3300009243	Microbial communities of water from Amazon river, Brazil - RCM13	Environmental	Open in IMG/M
3300009247	Microbial communities of water from Amazon river, Brazil - RCM14	Environmental	Open in IMG/M
3300009257	Microbial communities of water from Amazon river, Brazil - RCM22	Environmental	Open in IMG/M
3300009581	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_9_15_A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009584	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_9_15_A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010085	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010104	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010110	Soil microbial communities from Illinois, USA to study soil gas exchange rates - BV-IL-AGR metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010128	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011340	Combined Assembly of Wetland Metatranscriptomes	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012373	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012517	Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300013052	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013062	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019191	Estuarine microbial communities from the Columbia River estuary - R.880 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019212	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT25_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019244	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT293_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019250	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019265	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020066	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT45_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020195	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.P2.IB	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021259	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_2_08_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021273	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.386 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021286	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021303	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1080 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021855	Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021947	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - G-2016_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022154	Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17 MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300030533	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bb9 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030540	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db2 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030547	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db9 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030592	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030628	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb6 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031100	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_151 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031476	Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034396	Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S39 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300034479	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034480	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034652	Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_02R_16 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034653	Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_03R_16 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034662	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034666	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034668	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034669	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034671	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034771	Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S19 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DRAFT_00441820	2222084002	Subtropical Soil	MTLAVFNEDEPLNERRRKAGQREHSSREGHDVLAGRVKNFRKAGDVEKGTAGL
Ga0006764J43180_1017952	3300002864	Avena Fatua Rhizosphere	MTLACFLNETLLSERRRKAGQREHSSREGHDVWAGRVKTFRKASDVEKGTAGL*
Ga0007428J48920_1047781	3300003288	Avena Fatua Rhizosphere	MTLACFLNETLLSERRRKAGQREHSTREGHDVWAGRVKTFRNAGDVEKGAAGP*
Ga0066494_1290601	3300004564	Freshwater Sediment	LLLRTSTERVTLAVFGNEGLLNERRRKAGQREHSIREGHDASAGRVKTFRRAGDVEKGTAGL*
Ga0058858_10083792	3300004785	Host-Associated	MTLACFLNETLLSERRRKARQREHSIREGHDVWAGRVKTFRKASDVEKGTAGL*
Ga0058863_100714452	3300004799	Host-Associated	MTLAFFLNETLLSERRRKAGQREHSIREGHDVWAGRVKTFRNVGDVEKGTAGL*
Ga0058861_100746001	3300004800	Host-Associated	GKRLLLRTSTERMTLAVFGNEGLLNERRRKAGQREHSTREGHDVLAGRVKTFRKAGDVEKGTAGL*
Ga0058860_102032051	3300004801	Host-Associated	MALACFLNEALLSERRRKAGQREHSSREGHAVWAGRVKNFRKASDVEKGTAGL*
Ga0058862_100020921	3300004803	Host-Associated	LLLRTSTERMTLAVFGNEGLLNEKRRKAGQREHLIREGHDVWAGRVKTFRRAGDVEKGTAGL*
Ga0081243_10636231	3300006937	Tropical Rainforest Soil	PKGKRLLLRTSTEGMTLADVSAKSETPPNERRRKAGQREHSVREGHDVLAGRVKTFRKASDVEKDTAGL*
Ga0081243_14228621	3300006937	Tropical Rainforest Soil	LLLRTSTERMTLAVFRKEGLLNEKRRKAEQREHSEREGHSVSAGRVKTFRNVGDVEKGAAGL*
Ga0075025_10075571	3300007219	Watersheds	LLLRTSTERVALAVFGNGGLLNERRRKAGQREHLIREGHEVSAGLVKTFRQAGDVEKGTAGL*
Ga0075025_10146881	3300007219	Watersheds	MTLAVFGNEGLLNEKRRKAGQREHPIREGHDASAGRVKTFRRAGDVEKGTAGL*
Ga0075025_10199122	3300007219	Watersheds	MTLAVFGNEGLLNERRRKAGQREHAVREGHEIEAGFVKTFRHVGDVEKGTAGL*
Ga0103857_101052221	3300009235	River Water	PKGRRLLLRTSTERMTLAVFRKEGLPNERRRKAAQREHSEREGHSVSAGRVKTFRNVGDVEKGAAGL*
Ga0103860_100471851	3300009243	River Water	MTLAVFRKEGLPNERRRKAAQREHSEREGHSVSAGRVKTFRNVGDVEKGAAGL*
Ga0103860_100472001	3300009243	River Water	MTLAVFRKEGRPNERRRKAAQREHSEREGHSVSAGRVKTFRNVGDVEKGAAGL*
Ga0103860_100673991	3300009243	River Water	MTLAVFRKEGLLNERRRKAAQREHSGRGGHSVSAGRVKTFRHAGDVEKGTAGL*
Ga0103860_101199651	3300009243	River Water	PKGQRLLLRTSTERTTLAVPGNGDLLNERRRKAGQRERSRREGHGVEAGRVKTFRNVGDVEKGTAGL*
Ga0103861_100753292	3300009247	River Water	MTLAVFGNEGLLNERRRKAGQREHPLREGHDVSAGRVKTFRQSGDIEKGAAGL*
Ga0103869_100679261	3300009257	River Water	MTLAVFRKEGQPNERRRKAAQREHSEREGHSVSAGRVKTFRNVGDVEKGAAGL*
Ga0115600_11176151	3300009581	Wetland	MTLAVFGNEGLLNERRRKAGQREHAVREGHEIEAGFVKTFRHVGDVEKDTAGL*
Ga0115597_12043861	3300009584	Wetland	TERMTLAVFRKEGLLSERRRKAGQREHLSREGHEALAGSVKTFRNVGDVEKDTAGL*
Ga0127445_10323011	3300010085	Grasslands Soil	MTLAVPGNGNPLNESSRKAGQREHSEREGHEVLAGSVKTFRHAGDVEKGTAGL*
Ga0127446_11216451	3300010104	Grasslands Soil	MTLAVFRKEGRPKERRRKAGQREHSGREGHDGSAGRVKTFRNVGDVEKGTAGL*
Ga0127446_11280091	3300010104	Grasslands Soil	RLLLRTSTERMTLAVSGDGGRPKEKRRKAQQREHSGREGHDGSAGRVKTFRNVGDVEKGTAGL*
Ga0126316_10443121	3300010110	Soil	MTLAVSIKRNPLNERRRKAGQRERSIREGHDVWAGRVKTFRHAGDIEKDTAGL*
Ga0127486_11499211	3300010128	Grasslands Soil	MTLAVFLIETPLSERSRKAGQREHPIREGHGVWAGRVKTFRNAGDVEKDTAGL*
Ga0127456_10238631	3300010140	Grasslands Soil	MTLAVFLIETPLSERSRKAGQREHSEREGHEVWAGRVKTFRHVGDVEKDTAGL*
Ga0126321_13602731	3300010145	Soil	QHGRMTLAVFGNEGLLNERRRKAGQREHSIREGHDGSAGRVKTFRQFGDVEKGAAGL*
Ga0126321_14708811	3300010145	Soil	CPEGKRLLLRTSTERMTLAVSGNGGLLNERRRKAGQREHSIREGHDVQARRVKTFRRAGDVEKGTAGL*
Ga0127503_102505682	3300010154	Soil	MTLAAFGNGGLLNERRRKAGQREHPIREGHDASAGRVKTFRRAGDVEKGTAGL*
Ga0127503_106317322	3300010154	Soil	MTLAVFRKEGLLNERRRKAGQREHSSREGHAVSAGRVKTFDNVGDVEKDTAGL*
Ga0151652_111551371	3300011340	Wetland	MTLAVFGNEGLPKERRRKAAQREHAVREGHEIEAGFVKTFRHVGDVEKGTAGL*
Ga0150985_1018006531	3300012212	Avena Fatua Rhizosphere	MTLAVFGNEGLPKERRRKAAQREHTIREGHEIEAGFVKTFRHVGDVEKGTAGL*
Ga0150985_1225186501	3300012212	Avena Fatua Rhizosphere	MTLAVFKGIPLSERRRKAGQRERSIREGHDATAGRVKTFRHAGDAEKGTAGL*
Ga0134042_11576171	3300012373	Grasslands Soil	MTLAVSGDGGRPKEKRRKAQQREHSGREGHDGSAGRVKTFRNVGDVEKGTAGL*
Ga0150984_1070936472	3300012469	Avena Fatua Rhizosphere	MTQAVFLNEIPLNERRRKAGQREHSIREGHDVSAGRVKTFYNVGDVEKDTAGL*
Ga0157354_10334281	3300012517	Unplanted Soil	MVVTAHQHERMTLAVFGNEGLLNERRRKAGQREPAHREGHAAQARPVKTFRKVSDVKNDTADL*
Ga0157308_103656822	3300012910	Soil	RLLLRTSTERMTLAVFLNETPLSERRRKAGQREHSRREGHDVSAGLVKTFDNVGDVEKDTAGL*
Ga0154014_1566231	3300013052	Corn, Switchgrass And Miscanthus Rhizosphere	MTLAVSIKRNPLNERRRKAGQRERSIREGHEVWAGRVKTFRHAGDIEKDTAGL*
Ga0154010_1347771	3300013062	Corn, Switchgrass And Miscanthus Rhizosphere	KGRWLLLRTSTERMTLAVFGNEGLLNERRRKAGQREHPVREGHEIEAGFVKTFRHVGDVEKGTAGL*
Ga0180035_10513731	3300019191	Estuarine	LLLRTSTERMTLAVFGNEGLLNERRRKAGQREHAVREGHEIEAGFVKTFRHVGDVEKGTAGL
Ga0180106_10968922	3300019212	Groundwater Sediment	NRSCPEGRWLLLRTSTERVTLAVFGNEGLLNERRRKAGQREHSRREGHDVSAGLVKTFRKAGDVEKGTAGL
Ga0180111_11498991	3300019244	Groundwater Sediment	LLLRTSTERMTLAVFGNEGLLNERRRKAGQREHAVREGHEIEAGFVKTFRHVGDVEKDTAGL
Ga0180111_13895251	3300019244	Groundwater Sediment	LLLRTSTERVTLAVFGNEGLLNERRRKAGQREHSRREGHDALAGRVKTFRKAGDVEKGTAGL
Ga0187790_11550281	3300019250	Peatland	NRSCPEGKRLLLRTSTERMTLAVFGNEGLLNERRRKAGQREYSRREGHDGSAGRVKTFRNAGDVEKGAAGL
Ga0187790_12624442	3300019250	Peatland	MTLAVPGNGSQLNEKRRKAEQREHSEREGHSVSAGRVKTFRNAGDAEKGTAGL
Ga0184641_11209522	3300019254	Groundwater Sediment	MNRSCPEGKRLLLRTSTERMTLAVFGNEGLLNERRRKARQREHSTREGHEGEAGRVKTFRKAGDVEKGTAGL
Ga0184643_10228071	3300019255	Groundwater Sediment	MTLAFFLNEILLNERRRKARQREHSIREGHEIWAGSVKTFRNAGDVEKGTAGL
Ga0184643_10629001	3300019255	Groundwater Sediment	TSTERMTLAVFGNEGLLNERRRKAGQREHLIREGHDASAGCVKTFQRAGDVEKGTAGL
Ga0184646_16149161	3300019259	Groundwater Sediment	GRRLLLRTSTERMTLAVFGNEGLLNERRRKAGQREHAVREGHEIEAGFVKTFRHVGDVEKGTAGL
Ga0184647_13174551	3300019263	Groundwater Sediment	MTLAVFGNEGLLNERRRKAGQREHPVREGHEIEAGFVKTFRHVGDVEKGTAGL
Ga0187792_11764911	3300019265	Peatland	MTLAVFREEGLLNEKRRKAAQREHSEREGHSVSAGRVKTFRNAGDVEKGTAGL
Ga0184644_14832551	3300019269	Groundwater Sediment	LLLRTSTERMTLAVFGNEGLLNEKRRKAGQREHLVREGHEVEAGRVKTFQRAGDVEKGTAGL
Ga0190264_103501442	3300019377	Soil	MTLAVFRKEGLLNERRRKAAQREHSSREGHEALAVSVKTFRNVGDVEKDTAGL
Ga0180108_11872071	3300020066	Groundwater Sediment	CPEGRWLLLRTSTERMTLAVFGNEGLLSERRRKAGQREHSIREGHDVSAGRVKTFRNAGDVEKGTAGL
Ga0206356_113359481	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MTLAVSIKRNPLNERRRKAGQRERSIREGHDVWAGRVKTFRHAGDIEKDTAGL
Ga0206356_117361491	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MVVTAHQHERMTLAVSGNEGLLNERRRKAGQREHSIREGHDVSAGRVKTFRQSGDVEKGAAGL
Ga0163150_10000055154	3300020195	Freshwater Microbial Mat	MTLAVFGNEGLLNERRRKAGQREHAVREGHEIKAGSVKTFRHVGDVEKGTAGL
Ga0210380_103002801	3300021082	Groundwater Sediment	VNRSGPKGRWLLLRTSTERMTLAVSGNGGQLNERRRKAGQRERSRREGHGVEAGRVKTFRNVGDVEKGTAGL
Ga0179584_11911101	3300021151	Vadose Zone Soil	LLLRISTERMTLAVFRKEGLLNERRRKAGQREHSIREGHAVSAGRVKTFDNVGDVEKDTAGL
Ga0179581_1134921	3300021259	Vadose Zone Soil	MTLAVFRKEGLLNERRRKAGQREHLSREGHAVSAGRVKTFDNVGDVEKDTAGL
Ga0210340_10387611	3300021273	Estuarine	LRANRSGPWGRRLLLRTSTERVALAVFGNGGLLNERRRKAGQREHLIREGHEVSAGRVKTFRQAGDVEKGTAGL
Ga0179583_10766591	3300021286	Vadose Zone Soil	MTLAVFRKEGLLNERRRKAGQREHSIREGHAVSAGRVKTFDNVGDVEKDTAGL
Ga0210308_10409821	3300021303	Estuarine	LLLRTSTERMTLAVFENEGLLNERRRKAGQREHAVREGHEIEAGFVKTFRHVGDVEKDTAGL
Ga0213854_11136771	3300021855	Watersheds	GVNRSGPKGRRLLLRTSTERMTLAVSGNGGQLNERRRKAGQRERSRREGHSVWAGRVKTFRNVGDAEKGTAGL
Ga0213856_11845311	3300021947	Watersheds	MTLAVFGNEGLLNERRRKAGQREHLIREGHDASAGRVKTFQRAGDVEKGTAGL
Ga0222624_14345011	3300021951	Groundwater Sediment	LLLRTSTERMTLAVFGNEGLLNEKRRKAGQREHSIREGHEVEAGRVKTFQRAGDVEKGTAGL
Ga0213929_10106952	3300022154	Freshwater	MTLAVPGNGNSLNESSRKAGQREHSGREGHEVLAGSVKTFRHAGDVEKGTAGL
Ga0213929_10107391	3300022154	Freshwater	LLLRTSTERMTLAVFGNEGPPNERGRKAGQRERSIREGYEVSAEPVKTFRQAGDVEMDAARL
Ga0307281_103976411	3300028803	Soil	PKGRRLLLRTSTERMTLAVSGNGGQLNERRRKAGQRERSRREGYSVEAGRVKTFRNVGDVEKGTAGL
Ga0247632_10198031	3300030533	Soil	RLLLRTSTERMTLAVFLNEIPLSERRRKAGQREHSRREGHDVSAGLVKTFDNVGDVEKDTAGL
Ga0247649_10500781	3300030540	Soil	RLLLRTSTERMTLAVFLNEIPLSERRRKAGQREHLSREGHEALAGSVKTFRNVGDVEKDTAGL
Ga0247656_10993783	3300030547	Soil	WANRSYPKGKRLLLRTSTERMTLAVFLNEIPLSERRRKAGQREHSRREGHDVSAGLVKTFDNVGDVEKDTAGL
Ga0247612_11891571	3300030592	Soil	LLLHTSTERMTLAVFRKEGLLNERRRKAAQREHSSREGHEALAGSVKTFRNVGDVEKDTAGL
Ga0247629_103226911	3300030628	Soil	MTLAVFRKEGLLNERRRKAAQREHSSREGHEALAGSVKTFRNVGDVEKDTAGL
Ga0308205_10394801	3300030830	Soil	LLLRTSTERMTLAVFGNEGLLNEKRRKAGQREHSIREGHDVEAGRVKTFRRAGDVEKGTAGL
Ga0308206_11559481	3300030903	Soil	CPEGKRLLLRTSTERMTLAVFGNEGLLNEKRRKAGQREHLVREGHEVEAGRVKTFQRAGDVEKGTAGL
Ga0308198_11003061	3300030904	Soil	TSTERTTLAVSGNGGQLNERRRKAGQRERSRREGHGVEAGRVKTFRNVGDVEKGTAGL
Ga0308190_10838991	3300030993	Soil	MTLAVFLIETPLSERSRKAGQREHSSREGHEVWAGSVKTFRHAGDVEKGTAGL
Ga0308189_104747411	3300031058	Soil	CPKGSRLLLRTSTERMTLAVFRKEGLLSERRRKAGQREHSSREGHEALAGSVKTFRNVGDVEKDTAGL
Ga0308197_101191222	3300031093	Soil	MTLAVFLIEIPLSERSRKAGQREHSGREGHEVWAGSVKTFRHVGDVEKDTAGL
Ga0308180_10108751	3300031100	Soil	MTLAVFGNEGLLNERRRKAGQREHSIREGHDVWAGRVKTFRHVGDVEKGTAGL
Ga0314827_1226962	3300031476	Soil	MTLAVFFNEEPLSERRRKAGQREHLKREGNNVLAGRGNTFRNVGDVEKGTAGL
Ga0326777_058929_327_488	3300034396	Soil	MTLAVFGNEGLLNERRRKAGQREHLIREGHDVSAGRVKTFRQSGDVEKGAAGL
Ga0314785_008152_291_452	3300034479	Soil	MTLAVFFNEAPLSERRRKAGQREHSRREGHDVSAGLVKTFDNVGDVEKGTAGL
Ga0314785_015304_327_488	3300034479	Soil	MTLAVFNYDEPLNERRRKAGQREHSSREGHDAQARRVKNFRKDGDIEKGTAGL
Ga0314785_023653_322_483	3300034479	Soil	MTLAVFPTESPLNQRRRKAEQREHLVREEHEPSAEPVKNFRNAGDVEKDTAGL
Ga0314789_005152_337_498	3300034480	Soil	MTLAVFGNEGLLNERHRKVRQREHLIREGHDVLAGRVKNFRKAGDVEKGTAGL
Ga0370548_071234_262_423	3300034644	Soil	MTLAFFLNEILLNERRRKARQREHSIREGHEVWAGSVKTFRNAGDVEKGTAGL
Ga0316598_121732_292_480	3300034652	Untreated Peat Soil	LLLRTSTERLALAVFGNEGLLNERRRKAGQREHPIREGHEVWAGRVKTFRQAGDVEKGTAGL
Ga0316599_214423_293_481	3300034653	Untreated Peat Soil	LLLRTSTERLALAVFGNEGLLNERRRKAGQREHLIREGHEVWAGRVKTFRQAGDVEKGTAGL
Ga0314780_069738_251_412	3300034659	Soil	MTLAVPGNGDQLNERRRKAGQREHPSREGHGVWAGRVKTFRNVGDVEKGTAGL
Ga0314783_183800_178_366	3300034662	Soil	LLLRTSTERVTLAVFGNEGLLNERRRKAGQREHSIREGHDVSAGRVKTFRHAGDVEKGTAGL
Ga0314788_051131_326_487	3300034666	Soil	MTLAVFPTENPLNQRRRKAEQREHLVREEHEPSAEPVKNFRNAGDVEKDTAGL
Ga0314788_205026_320_481	3300034666	Soil	MTLAVFLNETPLSERRRKAGQREHSTREGHDVLAGRVKTFRKAGDVEKGTAGL
Ga0314793_157076_226_387	3300034668	Soil	MTLSVFFYDYPLNESRRKAGLMEHSIREGHDAQARRVKNFRKAGDVEKGTAGL
Ga0314794_125251_334_495	3300034669	Soil	MTLAFFLNETLLSERRRKAGQSERSNREGHASWAGRVKTFRKVGDVKNGTADL
Ga0314796_062208_325_486	3300034671	Soil	MTLAVFGNEGLLNERRRKAGQREHAVREGHEISAGFVKTFHHVGDVEKGTAGL
Ga0326771_041672_113_304	3300034771	Soil	MVVTAHQHERMTLAVFGNEGLLNERRRKAGQREHSIREGHDVSAGRVKTFRQSGDVEKGAAGL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.19
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.19
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102642

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign