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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F102678 |
| Family Type | Metagenome |
| Number of Sequences | 101 |
| Average Sequence Length | 59 residues |
| Representative Sequence | RSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKQSVCGTIFESEFIQLTKKLKLTIASS |
| Number of Associated Samples | 83 |
| Number of Associated Scaffolds | 101 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 33.33 % |
| % of genes near scaffold ends (potentially truncated) | 0.99 % |
| % of genes from short scaffolds (< 2000 bps) | 0.99 % |
| Associated GOLD sequencing projects | 77 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.25 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (97.030 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (27.723 % of family members) |
| Environment Ontology (ENVO) | Unclassified (29.703 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (41.584 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 17.24% β-sheet: 0.00% Coil/Unstructured: 82.76% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.25 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 101 Family Scaffolds |
|---|---|---|
| PF01841 | Transglut_core | 2.97 |
| PF01979 | Amidohydro_1 | 1.98 |
| PF12706 | Lactamase_B_2 | 1.98 |
| PF13414 | TPR_11 | 1.98 |
| PF03773 | ArsP_1 | 1.98 |
| PF00072 | Response_reg | 0.99 |
| PF01541 | GIY-YIG | 0.99 |
| PF01804 | Penicil_amidase | 0.99 |
| PF13847 | Methyltransf_31 | 0.99 |
| PF00078 | RVT_1 | 0.99 |
| PF02618 | YceG | 0.99 |
| PF13476 | AAA_23 | 0.99 |
| PF01593 | Amino_oxidase | 0.99 |
| PF13586 | DDE_Tnp_1_2 | 0.99 |
| PF13305 | TetR_C_33 | 0.99 |
| PF13565 | HTH_32 | 0.99 |
| PF13620 | CarboxypepD_reg | 0.99 |
| PF00665 | rve | 0.99 |
| PF00970 | FAD_binding_6 | 0.99 |
| PF04986 | Y2_Tnp | 0.99 |
| PF08388 | GIIM | 0.99 |
| PF14559 | TPR_19 | 0.99 |
| PF00005 | ABC_tran | 0.99 |
| PF05694 | SBP56 | 0.99 |
| PF00144 | Beta-lactamase | 0.99 |
| PF08867 | FRG | 0.99 |
| PF12891 | Glyco_hydro_44 | 0.99 |
| PF03796 | DnaB_C | 0.99 |
| PF01594 | AI-2E_transport | 0.99 |
| PF00239 | Resolvase | 0.99 |
| PF00004 | AAA | 0.99 |
| PF06969 | HemN_C | 0.99 |
| PF12704 | MacB_PCD | 0.99 |
| PF07040 | DUF1326 | 0.99 |
| PF07732 | Cu-oxidase_3 | 0.99 |
| PF13495 | Phage_int_SAM_4 | 0.99 |
| COG ID | Name | Functional Category | % Frequency in 101 Family Scaffolds |
|---|---|---|---|
| COG0701 | Uncharacterized membrane protein YraQ, UPF0718 family | Function unknown [S] | 1.98 |
| COG0305 | Replicative DNA helicase | Replication, recombination and repair [L] | 0.99 |
| COG0628 | Predicted PurR-regulated permease PerM | General function prediction only [R] | 0.99 |
| COG0635 | Coproporphyrinogen-III oxidase HemN (oxygen-independent) or related Fe-S oxidoreductase | Coenzyme transport and metabolism [H] | 0.99 |
| COG1066 | DNA repair protein RadA/Sms, contains AAA+ ATPase domain | Replication, recombination and repair [L] | 0.99 |
| COG1559 | Endolytic transglycosylase MltG, terminates peptidoglycan polymerization | Cell wall/membrane/envelope biogenesis [M] | 0.99 |
| COG1680 | CubicO group peptidase, beta-lactamase class C family | Defense mechanisms [V] | 0.99 |
| COG1686 | D-alanyl-D-alanine carboxypeptidase | Cell wall/membrane/envelope biogenesis [M] | 0.99 |
| COG1961 | Site-specific DNA recombinase SpoIVCA/DNA invertase PinE | Replication, recombination and repair [L] | 0.99 |
| COG2132 | Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA) | Cell cycle control, cell division, chromosome partitioning [D] | 0.99 |
| COG2366 | Acyl-homoserine lactone (AHL) acylase PvdQ | Secondary metabolites biosynthesis, transport and catabolism [Q] | 0.99 |
| COG2367 | Beta-lactamase class A | Defense mechanisms [V] | 0.99 |
| COG2452 | Predicted site-specific integrase-resolvase | Mobilome: prophages, transposons [X] | 0.99 |
| COG2801 | Transposase InsO and inactivated derivatives | Mobilome: prophages, transposons [X] | 0.99 |
| COG2826 | Transposase and inactivated derivatives, IS30 family | Mobilome: prophages, transposons [X] | 0.99 |
| COG3316 | Transposase (or an inactivated derivative), DDE domain | Mobilome: prophages, transposons [X] | 0.99 |
| COG4584 | Transposase | Mobilome: prophages, transposons [X] | 0.99 |
| COG5588 | Uncharacterized conserved protein, DUF1326 domain | Function unknown [S] | 0.99 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 97.03 % |
| All Organisms | root | All Organisms | 2.97 % |
| Visualization |
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| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300018009|Ga0187884_10006566 | All Organisms → cellular organisms → Bacteria | 7789 | Open in IMG/M |
| 3300021432|Ga0210384_10569882 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1018 | Open in IMG/M |
| 3300022557|Ga0212123_10001212 | All Organisms → cellular organisms → Bacteria | 74491 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 27.72% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 9.90% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 6.93% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 4.95% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 4.95% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 4.95% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 3.96% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 3.96% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 3.96% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 3.96% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 3.96% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 2.97% |
| Iron-Sulfur Acid Spring | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring | 2.97% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.98% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 1.98% |
| Fen | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen | 1.98% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 0.99% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.99% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.99% |
| Glacier Forefield Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 0.99% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.99% |
| Peat Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil | 0.99% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2124908041 | Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3 | Environmental | Open in IMG/M |
| 3300000567 | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 | Environmental | Open in IMG/M |
| 3300001545 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 | Environmental | Open in IMG/M |
| 3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
| 3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300005165 | Soil and rhizosphere microbial communities from Laval, Canada - mgHMC | Environmental | Open in IMG/M |
| 3300005176 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 | Environmental | Open in IMG/M |
| 3300005178 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 | Environmental | Open in IMG/M |
| 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Environmental | Open in IMG/M |
| 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
| 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Environmental | Open in IMG/M |
| 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Environmental | Open in IMG/M |
| 3300005569 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 | Environmental | Open in IMG/M |
| 3300005980 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203 | Environmental | Open in IMG/M |
| 3300006059 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 | Environmental | Open in IMG/M |
| 3300006162 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 | Environmental | Open in IMG/M |
| 3300006893 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG | Environmental | Open in IMG/M |
| 3300007265 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 | Environmental | Open in IMG/M |
| 3300007982 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG | Environmental | Open in IMG/M |
| 3300009038 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG | Environmental | Open in IMG/M |
| 3300009088 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG | Environmental | Open in IMG/M |
| 3300009089 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG | Environmental | Open in IMG/M |
| 3300009143 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 | Environmental | Open in IMG/M |
| 3300009700 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG | Environmental | Open in IMG/M |
| 3300009760 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_100 | Environmental | Open in IMG/M |
| 3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
| 3300010339 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 | Environmental | Open in IMG/M |
| 3300010341 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2 | Environmental | Open in IMG/M |
| 3300010343 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 | Environmental | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300011270 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG | Environmental | Open in IMG/M |
| 3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
| 3300012096 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG | Environmental | Open in IMG/M |
| 3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
| 3300012203 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG | Environmental | Open in IMG/M |
| 3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
| 3300012363 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG | Environmental | Open in IMG/M |
| 3300012927 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014153 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG | Environmental | Open in IMG/M |
| 3300014490 | Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG | Environmental | Open in IMG/M |
| 3300014498 | Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG | Environmental | Open in IMG/M |
| 3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300015054 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300015193 | Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream) | Environmental | Open in IMG/M |
| 3300017995 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1 | Environmental | Open in IMG/M |
| 3300018001 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5 | Environmental | Open in IMG/M |
| 3300018006 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4 | Environmental | Open in IMG/M |
| 3300018009 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40 | Environmental | Open in IMG/M |
| 3300018023 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100 | Environmental | Open in IMG/M |
| 3300018037 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10 | Environmental | Open in IMG/M |
| 3300018431 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104 | Environmental | Open in IMG/M |
| 3300018468 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111 | Environmental | Open in IMG/M |
| 3300019888 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2 | Environmental | Open in IMG/M |
| 3300020170 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
| 3300021088 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300022557 | Paint Pots_combined assembly | Environmental | Open in IMG/M |
| 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026304 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes) | Environmental | Open in IMG/M |
| 3300026309 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes) | Environmental | Open in IMG/M |
| 3300026333 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes) | Environmental | Open in IMG/M |
| 3300026551 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes) | Environmental | Open in IMG/M |
| 3300026984 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes) | Environmental | Open in IMG/M |
| 3300027565 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027570 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027616 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027663 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027669 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027678 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027862 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027875 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027898 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes) | Environmental | Open in IMG/M |
| 3300027903 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027908 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) | Environmental | Open in IMG/M |
| 3300028047 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300033433 | Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| P3_CLC_00486730 | 2124908041 | Soil | LDLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKESISGTTFKSRFIDLTIKPRLTIASS |
| JGI12270J11330_100002028 | 3300000567 | Peatlands Soil | LDLRSSLSIQPCEGSRFVRGGRYGISIDFGLEVVDKQSVCGTTFESEFIELTKKLKLTIVSS* |
| JGI12630J15595_100026324 | 3300001545 | Forest Soil | LDLRSSLVRGGRYEISIDFSLEVVEKQSACGAIFESEFIELTKKLKLTIA* |
| JGI12635J15846_104191882 | 3300001593 | Forest Soil | LIQRLEGSRFVRGGRYGISIDFGLEVIEKHSVCGTIFESEFIELTKKLKRKIAS |
| Ga0062387_1003306962 | 3300004091 | Bog Forest Soil | LELRSPRSIQPFEGSRFVHGGRYGISIDFGLEVIEKQSVCGAIFKSKFIDPTMKPRLTADH* |
| Ga0066869_100306352 | 3300005165 | Soil | VTGSVGLGLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKKSTCGASFKSKFIDLTMKPKLTIASS* |
| Ga0066679_100429792 | 3300005176 | Soil | LIQRLEGSRFVRGGRYGISIDFGLEVVEKQSVCSTIFESEFMELTNKRKFTFASS* |
| Ga0066688_100255013 | 3300005178 | Soil | LIQRLEGSRFVRGGRYGISIDFGLEVVEKQSVCSTIFESEFMELTNKRKFTIASS* |
| Ga0070706_1003678661 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | LIQRLEGSRFVRGGRYGISIDFGLEVVEKQNACSTIFESEFIELTKNRKLTIASS* |
| Ga0070706_1005408561 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | LEGSRFVRGGRYGISIDFGLEVVEKQSACSTIFESEFIELTKNRKLTISLS* |
| Ga0070707_1000907472 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | LDLKSSLSIQPFERSRFVRGGRYGISIDFGLEVVEKKSIWGASFKSKFIDLTMKPKLIIASS* |
| Ga0070707_1002701152 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | LIKRLEGSRFVRGGRYGISIDFGLEVVEKQNACSTIFESEFIELTKNRKLTIASS* |
| Ga0070699_1000530481 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | LIQRLEGSRFVRGGRYGISIDFGLEVVEKQSACSTIFESEFIELTKNRKLTISLS* |
| Ga0070697_1005004991 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | LIQRLEGSRFVRGGRYGISIDFGLEVVEKQSVCGAIFKSKFIDPTIKPRLTIASS* |
| Ga0066705_107354831 | 3300005569 | Soil | LDLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKQSVCSTIFESEFMELTNKRKFTFASS* |
| Ga0066798_100186193 | 3300005980 | Soil | LDLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKESISGTTFKSRFIDLTIKPRLTIASS* |
| Ga0075017_1000167555 | 3300006059 | Watersheds | VGVGALSIQRLEGSRFVRGGRYGISIDFGLEVIEKQRVCGAIFKSKFIDSTMKPKLTIASS* |
| Ga0075017_1003956061 | 3300006059 | Watersheds | LDLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKQGVCGTIFESKFIELTKKLKLTSASS* |
| Ga0075030_1004934533 | 3300006162 | Watersheds | RSSLSIQPFEGSRFVRVGRYGISIDFGLEVVEKKNICGASFKSKFIDLTMKPRLTIASS* |
| Ga0073928_1001095211 | 3300006893 | Iron-Sulfur Acid Spring | LIQRLEGSRFVRGGRYAISIDFGLEVIEKQSVCGTIFESEFIELTKKLKLKIASS* |
| Ga0099794_100247884 | 3300007265 | Vadose Zone Soil | LDLRSSLSIQPFEGSRFVRGGRYGVSIDFGLEVVEKQSVCGTIFESEFIELTNKLKLTIASS* |
| Ga0102924_13821161 | 3300007982 | Iron-Sulfur Acid Spring | RTGATGSVGLDLRSSLSIQPFEGSRFVRGGRYGISIDFSLEVVEKKSTCEARFKSKFIDLTMKPKLTIASS* |
| Ga0099829_105159442 | 3300009038 | Vadose Zone Soil | LDLRSSLSIQPIEGSRFVRGGRYGISIDFGLEVIEKESTCEAIFESKLIDLTTKPKLTFASS* |
| Ga0099829_106028081 | 3300009038 | Vadose Zone Soil | RRSLLIQRLEGSRFVRGGRYGISIDFGLEVVEKQSVCGTIFESEFIELTRKLKLRIASS* |
| Ga0099829_110460991 | 3300009038 | Vadose Zone Soil | SDLREAAFVRGGRYGISIDFGLEVVERESTCGTTFKSKFIDLTMKRRLTIASS* |
| Ga0099830_103329652 | 3300009088 | Vadose Zone Soil | LDLRSSLSIQPFEGIRFVRGGRYGLSIDFGLEVVEKQSVCGTILESEFIELT |
| Ga0099830_110173542 | 3300009088 | Vadose Zone Soil | FEGSRFVRGGRYGISIDFGLEVVEKESISGMTFKSRFIDLTIKPRLTIASS* |
| Ga0099828_103017922 | 3300009089 | Vadose Zone Soil | LDLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKESISGMTFKSRFIDLTIKPRLTIASS* |
| Ga0099828_105754002 | 3300009089 | Vadose Zone Soil | VTVSVSLDLRSSLSIQPFEGIRFVRGGRYGLSIDFGLEVVEKQSVCGTILESEFIELTQKLKLTIASS* |
| Ga0099828_110122572 | 3300009089 | Vadose Zone Soil | LIQRLEGSRFVRGGRYGISIDFGLEVVEKQSVCGTIFESEFIELTKKLKLRIASS* |
| Ga0099792_109366271 | 3300009143 | Vadose Zone Soil | LDLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKQSVCGTIFESEFIQLTKKLKLTIASS* |
| Ga0116217_1000042230 | 3300009700 | Peatlands Soil | LDLRSSLSIQPCEGSRFVRGGRYGISIDFGLEVVHKQSVCGTTFESEFIELTKKLKLTIVSS* |
| Ga0116131_10575882 | 3300009760 | Peatland | LDLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKENTCGATLKSEFIDLTIEPRLTIASS* |
| Ga0126373_102231853 | 3300010048 | Tropical Forest Soil | VITNQVSSFEGSRIVRGRRYGISIDFWLEVVERNSTCEATLKSKSINLTSKPKPTIASS* |
| Ga0074046_1000011427 | 3300010339 | Bog Forest Soil | LDLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKKNTCGANFKSKFIDLTIKHRLTIASS* |
| Ga0074045_100014503 | 3300010341 | Bog Forest Soil | LDLRSSLSIQPFEGSRFVRGGRFGISIDFGLEVVEKQSVSGAIIKSTFSDPTMKPGLIIASS* |
| Ga0074044_101691682 | 3300010343 | Bog Forest Soil | VVGAVSIGSFEGSRFVRGGRYGISIDFGLEVVETENTCGESFKSKFIDLTIKPRLTIASW |
| Ga0074044_104362732 | 3300010343 | Bog Forest Soil | DGFGRLGPQSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKKSTCGASFKSKFIDQTMKPRLTIASS* |
| Ga0136449_1025664731 | 3300010379 | Peatlands Soil | LIQRLEGSRFVRGGRYGISIDFGLEVVEKQSVCGTIFESEFIELTKKLKLTIASS* |
| Ga0137391_110588621 | 3300011270 | Vadose Zone Soil | QRLEGSRFVRGGRYGISIDFGLEVVEKQSVCGTIFESEFIELTRKLKLRIASS* |
| Ga0137393_100036177 | 3300011271 | Vadose Zone Soil | LDLRSSLSIQPFEGIRFVRGGRYGLSIDFGLEVVEKQSVCGTILESEFIELTQKLKLTIASS* |
| Ga0137393_102638212 | 3300011271 | Vadose Zone Soil | LIQRLEGSRFVHGGRYGISIDFGLEVVEKQRICGTIFESEFIELTRNLKLRIASS* |
| Ga0137389_107174461 | 3300012096 | Vadose Zone Soil | LSIQPFEGSRFVRGGRYGISIDFGLEVVEKESISGMTFKSRFIDLTIKPRLTIASS* |
| Ga0137389_110276671 | 3300012096 | Vadose Zone Soil | SLSIQPFEGSRFVRGGRYGISIDFGLEVVEKQSVCGTTFESEFMELTKQLKLTIASS* |
| Ga0137363_108150111 | 3300012202 | Vadose Zone Soil | VVGAASIRSFEGIRFVGGGRYGISIDFGLKVVEKENTCGETFKLQFIDLPSSQPHDRLM* |
| Ga0137399_112064932 | 3300012203 | Vadose Zone Soil | VVGAASIRSFEGIRFVGGGRYGISIDFGLKVVEKENTCGETFKLQFIDLP* |
| Ga0137360_102718242 | 3300012361 | Vadose Zone Soil | LDLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKQSVCGTIFESEFIELTKKLKLRIASS* |
| Ga0137360_114474192 | 3300012361 | Vadose Zone Soil | LDLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVIEKQRVCGTIFESEFIELSKKLKLTIASS* |
| Ga0137390_114380972 | 3300012363 | Vadose Zone Soil | IQPFEGSRFVRGGRYGISIDFGLEVVEKESISGMTFKSRFIDLTIKPRLTIASS* |
| Ga0137416_110170151 | 3300012927 | Vadose Zone Soil | VVGAASIRSFEGIRFVGSGRYGISIDFGLKVVEKENTCGETFKLQFIDLP* |
| Ga0181527_11134481 | 3300014153 | Bog | RSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKENTCGETFKSKFIDLTITPRLTIASS* |
| Ga0182010_100053343 | 3300014490 | Fen | LDLRRSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKQSVCGAIFKSKFIDPTMKPRLTVASS* |
| Ga0182019_100091674 | 3300014498 | Fen | LDLRRSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKQSVCGAIFKSKFIDPTMKPKLTVASS* |
| Ga0182024_103349963 | 3300014501 | Permafrost | LDLRSSLSIQPFEGSRFVRGERYGISIDFGLEVIEKQSVCGTIFESEFIALTKKLTIASS |
| Ga0137420_10880372 | 3300015054 | Vadose Zone Soil | RSLLIQRLEGSRLVRGGRYGISIDFSLEVVEKQCVCGTIFESEFTELTKKLKLRTASS* |
| Ga0167668_10067783 | 3300015193 | Glacier Forefield Soil | LDLRSSLSIQPFEGSRFVCGGLYGISIDFGLEVIEKESVFGVTFKSRFIDLTIKPKLTIASS* |
| Ga0187816_102867701 | 3300017995 | Freshwater Sediment | TASVSLDLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKKSICGASFKSKFIDLTMKPRLTIASS |
| Ga0187816_103619542 | 3300017995 | Freshwater Sediment | LDFRSSLSIQPLEGRRFVRGGRYGISIDFGLEVIEKENTCGATFKSTFIDLTIKPWLTIASS |
| Ga0187815_104007861 | 3300018001 | Freshwater Sediment | LDLRSSLSIQPFEGSRFVRGGHYGISIDFGLEVIEKQSVCGAIIESKFIDPTMKPRLTIALS |
| Ga0187804_100939072 | 3300018006 | Freshwater Sediment | LIQRLEGSRFVRGGRYGISIDFGLEVVEKQSVCGTIFESKFIELTEKRKLTIASW |
| Ga0187804_102410212 | 3300018006 | Freshwater Sediment | LDLRSSLSIQPFEGSRFVRGGHYGISIDFGLEVIEKQSVCGAIIESKFIDPTMKPRITIALS |
| Ga0187884_100065663 | 3300018009 | Peatland | LDLRRSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKQSVCGAIFKSKFIDPTMKPRLTVASS |
| Ga0187889_101575183 | 3300018023 | Peatland | RQNLRRSLLIQRLEWSRFVRGGRYGISIDFGLEVVEKESTSGTSFKSRFIDLTIKPRLMIASS |
| Ga0187883_102238202 | 3300018037 | Peatland | LELRSSLSIQPFEGSRFVRGGRYGISIDFGLEVIEKQRVCGAIFKSKFIDPTMKPRLTIASL |
| Ga0066655_101596141 | 3300018431 | Grasslands Soil | LDLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVIEKQSVCGAIFKSKFIDPTMKPRLTIASS |
| Ga0066662_101595604 | 3300018468 | Grasslands Soil | EGSRFVRGGRYGISIDFGLEVVEKQSVCSTIFESEFMELTNKRKFTFASS |
| Ga0193751_10085205 | 3300019888 | Soil | LIQRLEGSRFVRGGRYGISIDFGLEVVEKQICGTIFESEFIELTRKLKLRIASS |
| Ga0179594_103570551 | 3300020170 | Vadose Zone Soil | VVGAASIRSFEGIRFVGGGRYGISIDFGLKVVEKENTCGETFKLQFIDLPSSQPHDRLM |
| Ga0210395_106563232 | 3300020582 | Soil | SRFVRGGRYGISIDSGLEVVEKNNICGASFKSKLIDLTMKRRLTIASS |
| Ga0210401_107022171 | 3300020583 | Soil | LIQRLEGGRFVRGGRYGISIDFGLEVVEKQIACSTIFESEFIEQPKNRKLTIA |
| Ga0210404_104786281 | 3300021088 | Soil | LIQRLEGSRFVRGGRYGISIDFGLEAVEKQSVCGTIFESEFIELTKKLKLRIASS |
| Ga0210384_104553201 | 3300021432 | Soil | LIQRLEGSRFVRGGRYGISIDFGLEIVEKQSVCGTIFELEFIELTKKLKLKIASS |
| Ga0210384_105698821 | 3300021432 | Soil | LLIQRLEGGRFVRGGRYGISIDFGLEVVEKQIACSTIFESEFIEQPKNRKLTIA |
| Ga0126371_101191263 | 3300021560 | Tropical Forest Soil | VITNQVSSFEGSRIVRGRRYGISIDFWLEVVERNSTCEATLKSKSINLTSKPKPTIASS |
| Ga0212123_1000121254 | 3300022557 | Iron-Sulfur Acid Spring | LIQRLEGSRFVRGGRYAISIDFGLEVIEKQSVCGTIFESEFIELTKKLKLKIASS |
| Ga0207646_117979312 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | DLRRSLLIQRLEGSRFVRGGRYGISIDFGLEVVEKQNACSTIFESEFIELTKNRKLTIAS |
| Ga0209240_12656591 | 3300026304 | Grasslands Soil | LIQRLEGSRFVRGGRYWISIDFGLEVVEKQSACGTFFESEFIELTK |
| Ga0209055_10105624 | 3300026309 | Soil | LIQRLEGSRFVRGGRYGISIDFGLEVVEKQSVCSTIFESEFMELTNKRKFTFASS |
| Ga0209158_10656881 | 3300026333 | Soil | LIQRLEGSRFVRGGRYGISIDFGLEVVEKQSVCSTIFESEFMELTNKRKFTFA |
| Ga0209648_101960922 | 3300026551 | Grasslands Soil | LIQRLEGSRFVHGGRYGISIDFGLEVVEKQRICGTIFESEFIELTRNLKLRIASS |
| Ga0208732_10208731 | 3300026984 | Forest Soil | LDLSGSLSIQPFEGSRFVRGGRYGISIDSSLEVVGKKSTCEATFISKFIDLTMKPRLTVATS |
| Ga0209219_11100872 | 3300027565 | Forest Soil | LIQRLEGSRFVRGGRYGISIDFGLEVIEKHSVCGTIFESEFIELTKKLKRKIASS |
| Ga0208043_10311892 | 3300027570 | Peatlands Soil | LDLRSSLSIQPCEGSRFVRGGRYGISIDFGLEVVDKQSVCGTTFESEFIELTKKLKLTIVSS |
| Ga0209106_11241161 | 3300027616 | Forest Soil | LIQRLEGSRFVRGGRYGISIDFGLEVVEKQSACGTIFESGFIELAKKLKLRIASS |
| Ga0208990_10504272 | 3300027663 | Forest Soil | LIQRLEGSRFVRGGRYGISIDFGLEVVEKQSACGTIFESEFIELAKKLKLRIASS |
| Ga0208981_10697752 | 3300027669 | Forest Soil | LIQRLEGSRFVRGGRYGISIDFGLEVVEKQSACGTIFESAFIELAKKLKLKIASS |
| Ga0209011_10439012 | 3300027678 | Forest Soil | LKEAAFVRGGRYGISIDFGLEVVEKQSACSTIFESEFIELTKNRKLTIASS |
| Ga0209701_105183761 | 3300027862 | Vadose Zone Soil | RSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKQSVCGTIFESEFIQLTKKLKLTIASS |
| Ga0209283_103470922 | 3300027875 | Vadose Zone Soil | LDLRSSLSIQPFEGSRFVRRGRYGISIDFGLEVVEKQSVCGTILKSEFIKLTKKLKLTIASS |
| Ga0209283_104955151 | 3300027875 | Vadose Zone Soil | RSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKESISGMTFKSRFIDLTIKPRLTIASS |
| Ga0209283_107641841 | 3300027875 | Vadose Zone Soil | VTVSVSLDLRSSLSIQPFEGIRFVRGGRYGLSIDFGLEVVEKQSVCGTILESEFIELTQKLKLTIASS |
| Ga0209067_109161091 | 3300027898 | Watersheds | LDLRSSLSIQPFEGSRFVRVGRYGISIDFGLEVVEKKNICGASFKSKFIDLTMKPRLTIASS |
| Ga0209488_102917242 | 3300027903 | Vadose Zone Soil | LDLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKQSVCGTIFESEFIQLTKKLKLTIASS |
| Ga0209006_115419171 | 3300027908 | Forest Soil | LDLRSSLSIQPFEGRRFVRGGRYGISIDFGLEVVEKEGTCGEAFRLKSIDLTIQAQIHSHIRKTSR |
| Ga0209526_1000107215 | 3300028047 | Forest Soil | LDLRSSLVRGGRYEISIDFSLEVVEKQSACGAIFESEFIELTKKLKLTIA |
| Ga0310686_1175618511 | 3300031708 | Soil | MVGVVSIGSFEASRFVPGGRYAISIDFGLEVIEKENTCGERSKSKFIDLTIKPRLTIASW |
| Ga0307469_102169811 | 3300031720 | Hardwood Forest Soil | LDLRSSLSIQPFEGSRFVRGGRYGISIDFGLEVVENKNICGASFKSKFIDLTMKPRLTIASS |
| Ga0307468_1007994122 | 3300031740 | Hardwood Forest Soil | LDLRSSLSIQPIEGSRFVRGGRYGISIDFGLEVVEKKNICGASFKSKFIDLT |
| Ga0307468_1024821431 | 3300031740 | Hardwood Forest Soil | GSLGPQSSLSIQPFEGSRFVRGGRYGISIDFGLEVVEKKNICGAGFKSKFIDLTMKPRLTIASS |
| Ga0307471_1033278011 | 3300032180 | Hardwood Forest Soil | TGATASVSLDFRSSLSIQPFEGSRFVRGGRYGISIDFGLEVVENKNICGASFKSKFIDLTMKPRLTIASS |
| Ga0326726_121113591 | 3300033433 | Peat Soil | VVGAVSIGSFEGSRFVRGGRYGISIDFGLEVIEKENTCGETFKSKFIELTIKPRLTIASW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |