NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F102734

Metagenome Family F102734

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102734
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 41 residues
Representative Sequence MNQMTRRAFGAAGFALLLATSASFAQQPPPVRVRGTIEAVD
Number of Associated Samples 88
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 96.04 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 92.08 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (56.436 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(12.871 % of family members)
Environment Ontology (ENVO) Unclassified
(25.743 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.485 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 33.33%    β-sheet: 0.00%    Coil/Unstructured: 66.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF13561adh_short_C2 45.54
PF028262-Hacid_dh_C 4.95
PF003892-Hacid_dh 1.98
PF13531SBP_bac_11 0.99
PF00106adh_short 0.99
PF00196GerE 0.99
PF09694Gcw_chp 0.99
PF13426PAS_9 0.99
PF02945Endonuclease_7 0.99
PF00480ROK 0.99
PF00941FAD_binding_5 0.99
PF01799Fer2_2 0.99
PF11306DUF3108 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG1940Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domainTranscription [K] 1.98

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A56.44 %
All OrganismsrootAll Organisms43.56 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2228664022|INPgaii200_c0901462All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria675Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c0494043Not Available566Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_100355844Not Available585Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101922334Not Available882Open in IMG/M
3300000597|AF_2010_repII_A1DRAFT_10145470All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria572Open in IMG/M
3300000655|AF_2010_repII_A100DRAFT_1008144All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2007Open in IMG/M
3300000793|AF_2010_repII_A001DRAFT_10127236All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria532Open in IMG/M
3300000837|AP72_2010_repI_A100DRAFT_1063693Not Available523Open in IMG/M
3300000893|AP72_2010_repI_A001DRAFT_1026559All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria921Open in IMG/M
3300000893|AP72_2010_repI_A001DRAFT_1029492All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria870Open in IMG/M
3300000893|AP72_2010_repI_A001DRAFT_1036592All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria771Open in IMG/M
3300000956|JGI10216J12902_119442066Not Available566Open in IMG/M
3300004070|Ga0055488_10060487All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria846Open in IMG/M
3300004268|Ga0066398_10066964All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria766Open in IMG/M
3300005332|Ga0066388_103926453All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria758Open in IMG/M
3300005364|Ga0070673_101511956All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria633Open in IMG/M
3300005457|Ga0070662_101534710All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria574Open in IMG/M
3300005574|Ga0066694_10194853All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria962Open in IMG/M
3300005617|Ga0068859_102470906All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria572Open in IMG/M
3300005713|Ga0066905_100160832All Organisms → cellular organisms → Bacteria1631Open in IMG/M
3300005713|Ga0066905_101139277All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria694Open in IMG/M
3300005764|Ga0066903_101730590All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1191Open in IMG/M
3300005764|Ga0066903_107692384All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM1417555Open in IMG/M
3300005764|Ga0066903_108391804Not Available527Open in IMG/M
3300005843|Ga0068860_100057555All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3695Open in IMG/M
3300005921|Ga0070766_11082305Not Available553Open in IMG/M
3300006046|Ga0066652_100012310All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5557Open in IMG/M
3300006854|Ga0075425_100773988All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1100Open in IMG/M
3300006904|Ga0075424_100089849All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3231Open in IMG/M
3300006954|Ga0079219_10650421All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria787Open in IMG/M
3300009100|Ga0075418_11961448Not Available637Open in IMG/M
3300009162|Ga0075423_10091412All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3180Open in IMG/M
3300009162|Ga0075423_10601382All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1159Open in IMG/M
3300009176|Ga0105242_12257683Not Available590Open in IMG/M
3300009792|Ga0126374_11424352All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria565Open in IMG/M
3300010043|Ga0126380_10495782Not Available936Open in IMG/M
3300010046|Ga0126384_12210302Not Available530Open in IMG/M
3300010335|Ga0134063_10030547All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2284Open in IMG/M
3300010336|Ga0134071_10219092All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria942Open in IMG/M
3300010361|Ga0126378_10050425All Organisms → cellular organisms → Bacteria → Proteobacteria3876Open in IMG/M
3300010361|Ga0126378_11240634All Organisms → cellular organisms → Bacteria → Proteobacteria842Open in IMG/M
3300010361|Ga0126378_12031715Not Available655Open in IMG/M
3300010361|Ga0126378_12368826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria606Open in IMG/M
3300010362|Ga0126377_11833310Not Available682Open in IMG/M
3300010397|Ga0134124_10991794Not Available851Open in IMG/M
3300010399|Ga0134127_12393334All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria608Open in IMG/M
3300010999|Ga0138505_100025347All Organisms → cellular organisms → Bacteria783Open in IMG/M
3300012199|Ga0137383_10496338Not Available894Open in IMG/M
3300012208|Ga0137376_10165842All Organisms → cellular organisms → Bacteria → Proteobacteria1904Open in IMG/M
3300012210|Ga0137378_10964135All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria766Open in IMG/M
3300012211|Ga0137377_10954293All Organisms → cellular organisms → Bacteria789Open in IMG/M
3300012211|Ga0137377_11089672Not Available729Open in IMG/M
3300012357|Ga0137384_10696268All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria825Open in IMG/M
3300012469|Ga0150984_115877876Not Available627Open in IMG/M
3300012957|Ga0164303_10837522Not Available637Open in IMG/M
3300012987|Ga0164307_10082330Not Available1960Open in IMG/M
3300014315|Ga0075350_1119215Not Available641Open in IMG/M
3300014968|Ga0157379_11689042Not Available620Open in IMG/M
3300014969|Ga0157376_10781078Not Available966Open in IMG/M
3300014969|Ga0157376_11117337Not Available814Open in IMG/M
3300015201|Ga0173478_10751568Not Available528Open in IMG/M
3300016341|Ga0182035_11730807Not Available565Open in IMG/M
3300018055|Ga0184616_10101204Not Available1028Open in IMG/M
3300018076|Ga0184609_10225945Not Available874Open in IMG/M
3300018081|Ga0184625_10211277Not Available1017Open in IMG/M
3300018466|Ga0190268_10323000Not Available942Open in IMG/M
3300018469|Ga0190270_11020643Not Available855Open in IMG/M
3300018476|Ga0190274_11055745Not Available890Open in IMG/M
3300021086|Ga0179596_10458954Not Available645Open in IMG/M
3300021407|Ga0210383_11544699Not Available548Open in IMG/M
3300021415|Ga0193694_1031701Not Available741Open in IMG/M
3300025885|Ga0207653_10187452Not Available776Open in IMG/M
3300025914|Ga0207671_11574300Not Available506Open in IMG/M
3300025972|Ga0207668_10382196All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1185Open in IMG/M
3300026285|Ga0209438_1182810Not Available554Open in IMG/M
3300026528|Ga0209378_1297382Not Available516Open in IMG/M
3300026548|Ga0209161_10103383All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1713Open in IMG/M
3300026552|Ga0209577_10064067All Organisms → cellular organisms → Bacteria → Proteobacteria3064Open in IMG/M
3300027909|Ga0209382_10729787Not Available1063Open in IMG/M
3300028802|Ga0307503_10167125Not Available1013Open in IMG/M
3300028809|Ga0247824_10218368Not Available1048Open in IMG/M
3300028814|Ga0307302_10343826Not Available735Open in IMG/M
3300028878|Ga0307278_10186629Not Available925Open in IMG/M
3300028878|Ga0307278_10248355Not Available790Open in IMG/M
3300028881|Ga0307277_10046599All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1760Open in IMG/M
3300031199|Ga0307495_10033192Not Available964Open in IMG/M
3300031680|Ga0318574_10086549All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1717Open in IMG/M
3300031768|Ga0318509_10334499All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium848Open in IMG/M
3300031769|Ga0318526_10483640All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria506Open in IMG/M
3300031782|Ga0318552_10273045Not Available859Open in IMG/M
3300031798|Ga0318523_10154000Not Available1143Open in IMG/M
3300031799|Ga0318565_10190803Not Available996Open in IMG/M
3300031897|Ga0318520_11019028Not Available523Open in IMG/M
3300031912|Ga0306921_12052934Not Available607Open in IMG/M
3300032013|Ga0310906_10600417Not Available758Open in IMG/M
3300032044|Ga0318558_10367491Not Available714Open in IMG/M
3300032159|Ga0268251_10337110Not Available636Open in IMG/M
3300032180|Ga0307471_103742858Not Available538Open in IMG/M
3300032205|Ga0307472_101666920Not Available629Open in IMG/M
3300032261|Ga0306920_103500969Not Available580Open in IMG/M
3300033289|Ga0310914_10440306Not Available1179Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil12.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil9.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.90%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil7.92%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.93%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil6.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil6.93%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.94%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.97%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.98%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.98%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.98%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.98%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.99%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.99%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.99%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.99%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.99%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.99%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.99%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.99%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.99%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.99%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.99%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.99%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2228664022Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000597Forest soil microbial communities from Amazon forest - 2010 replicate II A1EnvironmentalOpen in IMG/M
3300000655Forest soil microbial communities from Amazon forest - 2010 replicate II A100EnvironmentalOpen in IMG/M
3300000793Forest soil microbial communities from Amazon forest - 2010 replicate II A001EnvironmentalOpen in IMG/M
3300000837Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100EnvironmentalOpen in IMG/M
3300000893Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001EnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004070Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004268Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBioEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010999Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300014315Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D1EnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300018055Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coexEnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021415Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300028809Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300031199Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_SEnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032159Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)Host-AssociatedOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPgaii200_090146212228664022SoilMDQMTRRAFGAAGFALLLATSTTLAQQQSPTVRVRGTIEGVDGPM
ICChiseqgaiiDRAFT_049404313300000033SoilMHPMTRRXLCALGLAXLXATSASXAQXPAAVRVRGTI
INPhiseqgaiiFebDRAFT_10035584413300000364SoilMHGITRRMFCAVAXXLLAATSVSLAQQPETVRVRGTVE
INPhiseqgaiiFebDRAFT_10192233413300000364SoilMNQMTRRVFAVAGFTLLLATSASFAQQPPPVRVRGTVE
AF_2010_repII_A1DRAFT_1014547023300000597Forest SoilMNQITRRAFGAAGFALLLVTSASFAQQPPPVRVRGTVEA
AF_2010_repII_A100DRAFT_100814413300000655Forest SoilMKQMTRRIFGMAGFALLLATSASFAQQPPQTVRIRGQIEKVEGDV
AF_2010_repII_A001DRAFT_1012723613300000793Forest SoilMNQMTRRVFAVAGFTLLLATSASFAQQPPPVRVRGTVEG
AP72_2010_repI_A100DRAFT_106369313300000837Forest SoilMKAVIRGVFAVAGVALLLGTAASFAQQPALVRVRGTVEAVD
AP72_2010_repI_A001DRAFT_102655913300000893Forest SoilMNHITRRAFGAAGFALLLVTSASFAQQPPPVRVRGTVE
AP72_2010_repI_A001DRAFT_102949223300000893Forest SoilMNQITRRAFGAAGFALLLVTSASFAQQPPPVRVRGTVE
AP72_2010_repI_A001DRAFT_103659223300000893Forest SoilMKQMTRRVFGVAGFALLLATSASFAQQPPPVRIRGQIEK
JGI10216J12902_11944206613300000956SoilMDQMTRRAFGAAGFAVLLATSTTFAEQQSSTVRMRGTVEGADGPMLTV
Ga0055488_1006048723300004070Natural And Restored WetlandsMNKLTRRALGVAGFALILATSASFAQQPPVRIRGDIVKADGDVFEIKTRGGET
Ga0066398_1006696423300004268Tropical Forest SoilMNQITRRAFGVGGFALLLATSESFAQQSPPVRVRGTIEAFDNGVLT
Ga0066388_10392645323300005332Tropical Forest SoilMNQTTRRAFGAAGFALLLATSVSFAQQPPPVRVRGTVEAVDGP
Ga0070673_10151195623300005364Switchgrass RhizosphereMNQTTRRVFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDGPMLTV
Ga0070662_10153471023300005457Corn RhizosphereMNQTTRRIFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDG
Ga0066694_1019485323300005574SoilMNQMTRRFFGVAGFALLLATSASFAQQQPPTVRIRGQIEKV
Ga0068859_10247090613300005617Switchgrass RhizosphereMHGMTRRVLCALGLALLSATSASLAQQPAAVRVRGTIEAV
Ga0066905_10016083213300005713Tropical Forest SoilMDKMTRRAVDAAGFALLLATSATFAQQQSPTVRVRG
Ga0066905_10113927713300005713Tropical Forest SoilMNHITRRAFGAAGFALLLVTSASFAQQPPPVRVRGTVEAVDGP
Ga0066903_10173059013300005764Tropical Forest SoilMDGITRRAFGAAGFALLLATTTTLAQQQSPTVRVR
Ga0066903_10769238413300005764Tropical Forest SoilVKHVRQRAFCLVTLALASSASFAQEHATVRVRGTIEAVD
Ga0066903_10839180433300005764Tropical Forest SoilMKQMTRRVFGVAGFALLLATSASFAQQPPPVRIRG
Ga0068860_10005755553300005843Switchgrass RhizosphereMNQTTRRIFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDGPMLTV
Ga0070766_1108230513300005921SoilMNKMTRRMFGASSLAVLLASRAGFAQQSPPVRVRGT
Ga0066652_10001231063300006046SoilMKQMTRRVFGVAGFALLLATSASFAQQPPPVRIRGQIEKIEGDVLDIKT
Ga0075425_10077398813300006854Populus RhizosphereMNQMTRRVFGVAGFALLLATSASFAQQPPPTVRIRGQI
Ga0075424_10008984963300006904Populus RhizosphereMHPMTRRLLCALGLALLSATPASLAQQPAAVRVRGTIEAVDGAM
Ga0079219_1065042113300006954Agricultural SoilMNQMTRRVFGVAGFALLLATSASFAQQPPPTVRIRGQIEKVDG
Ga0075418_1196144813300009100Populus RhizosphereMKQMTRRVFAVAGFTLLLATSASFAQQPPPVRVRGTVEG
Ga0075423_1009141243300009162Populus RhizosphereMNQMTRRVFGVAGFALLLATSASFAQQPPPTVRIRGQIE
Ga0075423_1060138223300009162Populus RhizosphereMKQMTRRVFGVAGFALLLATSASFAQQPPPTVRIRGQIEK
Ga0105242_1225768323300009176Miscanthus RhizosphereMNQTTRRVFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDGP
Ga0126374_1142435213300009792Tropical Forest SoilMGFREDDMNQITRRAFGAAGFALLLVTSASFAQQPPPVRVRGTVEAVD
Ga0126380_1049578223300010043Tropical Forest SoilMGFREDDMKAVIRGVFAVAGVALLLGTAASFAQQPALVRVRGTVEAV
Ga0126384_1221030223300010046Tropical Forest SoilMVMYGLTNRVTRRAFAVAGFALLVATSASFAQQPQMVRVRGTV
Ga0134063_1003054713300010335Grasslands SoilMNQMTRRAFGAAGFALLLATSASFAQQPPPVRVRG
Ga0134071_1021909233300010336Grasslands SoilMNQMTRRFFGVAGFALLLATSASFAQQQPPTVRIRGQ
Ga0126378_1005042513300010361Tropical Forest SoilMNQMTRRIFAMAGFALLLATSASFAQQPPQTVRIRGQIEKVEGDVLDIK
Ga0126378_1124063413300010361Tropical Forest SoilMKQMTRRVFGVAGFALLLATSASFAQQPPPVRIRGQIEKIEGDVLDIK
Ga0126378_1203171523300010361Tropical Forest SoilMKQMTRRVFGVAGFALLLATSASFAQQPPPVRIRGQIEKIEG
Ga0126378_1236882613300010361Tropical Forest SoilMDKMTRRAFGAAGLVLLLSTSAPLAQQQAPSVRVRGTIERIDGSTY
Ga0126377_1183331023300010362Tropical Forest SoilMPCLLAPALLLAAGASLAQEPAPVRVRGTIEAVDGAMLTVRSR
Ga0134124_1099179433300010397Terrestrial SoilMTRRLLCALGLALLSATPASLAQQPAAVRVRGTIEAVDGAMLTVRS
Ga0134127_1239333413300010399Terrestrial SoilMKQMTRRVFGVAGFALLLATSASFAQQPPPTVRIRGQIEKVD
Ga0138505_10002534723300010999SoilMDQMTRRAFGAAGFAVLLATSTTFAEQQSSTVRMRGTVEGADGPMLTVTS
Ga0137383_1049633813300012199Vadose Zone SoilMNQMTRRAFGVAGFTVLLVTSASFAQQQPPPVRVRG
Ga0137376_1016584213300012208Vadose Zone SoilMDEMTRRAFGAAGFALLLATSATFAQQQSPTVRVRGTVEG
Ga0137378_1096413513300012210Vadose Zone SoilMNQMTRRVFGVAGFALLLATSASFAQQQPQTVRIRGQIEKVEGD
Ga0137377_1095429313300012211Vadose Zone SoilMDQMTRRVFGAAGFALLLATSTTFAQQQSPTVRVRGTVE
Ga0137377_1108967213300012211Vadose Zone SoilMNQMTRRAFGVAGFTVLLVTSASFAQQQPPPVRVR
Ga0137384_1069626813300012357Vadose Zone SoilMNQMTRRFFGVAGFALLLATSASFAQQQPPTVRIRGQIEK
Ga0150984_11587787623300012469Avena Fatua RhizosphereMHSMTRRMLYAAGLFLLGATSVSFAQQTELVRVRGTI
Ga0164303_1083752213300012957SoilMNQMIRRASSAAAFALLFVASISFAQQPPQVRVRGTVEAVDGS
Ga0164307_1008233013300012987SoilMTRRVFCALGLALLSATSASFAQQPAAVRVRGTIEAVDG
Ga0075350_111921523300014315Natural And Restored WetlandsMNKLTRRALGVAGFALILATSASFAQQPPVRIRGDIVKADGDVFEIKTRGGETVKV
Ga0157379_1168904223300014968Switchgrass RhizosphereMKQTTRRIFGVAGFALLLATSASFAQQPAPVRVRGTVEAVD
Ga0157376_1078107843300014969Miscanthus RhizosphereMHLMTRRMLCALGLALLPVTSVSLAQQSAPVRVRGTIEAV
Ga0157376_1111733723300014969Miscanthus RhizosphereMNQTTRRVFGVAGFALLLATSASFAQQPAPVRVRGTVEAVD
Ga0173478_1075156823300015201SoilMNQTTRRVFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDGPML
Ga0182035_1173080713300016341SoilMNQITRRALGAAGFALLLATSVSFAQQPPPVRVRGTVE
Ga0184616_1010120413300018055Groundwater SedimentMNQTTRRIFGVAGFALLLATSASFAQQPAPVRVRGTVEA
Ga0184609_1022594513300018076Groundwater SedimentMNQTTRRVFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDG
Ga0184625_1021127713300018081Groundwater SedimentMQGITRRMFCAVALSLLAATSVSLAQQPETVRVRGTIEAVDGAMLT
Ga0190268_1032300013300018466SoilMNQTTRRIFGVAGFALLLATSASFAQQPAPVRVRGTVEAV
Ga0190270_1102064323300018469SoilMNQTTRRVFGVAGFALLLATSASFAQQPAPVRVRGTVEAV
Ga0190274_1105574533300018476SoilMHPMTRRMFCAIGFALLPVTSVSFAQQPAPVRVRGTI
Ga0179596_1045895413300021086Vadose Zone SoilMNKMTRRMFGASSFALLLAGSASYAQQSPPVRVRGTVEGVD
Ga0210383_1154469923300021407SoilMNKLTRRMFGASSLAVLLASPFASSAGLAQQSPAVRVRG
Ga0193694_103170123300021415SoilMNQTTRRIFGVAGFALLLAASASFAQQPAPVRVRGTVEAV
Ga0207653_1018745223300025885Corn, Switchgrass And Miscanthus RhizosphereMNQTTRRIFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDGPMLT
Ga0207671_1157430013300025914Corn RhizosphereMHPMTRRVLCALGLALLSATSASLAQQPAAVRVRGTIEAVD
Ga0207668_1038219613300025972Switchgrass RhizosphereMHLMTRRMLCAVGFALLPVTSVSFAQQPAPVRVRGTIEAVDGAMLTV
Ga0209438_118281023300026285Grasslands SoilMNQTTRRVFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDGPLL
Ga0209378_129738223300026528SoilMNQMTRRAFGAAGFALLLATSASFAQQPPPVRVRGTIEAVD
Ga0209161_1010338313300026548SoilMNQMTRRFFGVAGFALLLATSASFAQQQPPTVRIRGQIEKVE
Ga0209577_1006406743300026552SoilMKQMTRRVFGVAGFALLLATSASFAQQPPPVRIRGQIE
Ga0209382_1072978723300027909Populus RhizosphereMNQTTRRVVGAAGLALLLLTSASFAQQPAPVRVRGTV
Ga0307503_1016712513300028802SoilMNQTTRRIFGVAGFALLLATSASFAQQPAPVRVRG
Ga0247824_1021836813300028809SoilMNQTTRRIFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDGQM
Ga0307302_1034382613300028814SoilMHGITRRMFCAVVLSLLAVTSVSFAQQPETVRVRGTIEAV
Ga0307278_1018662923300028878SoilMNQMTRRAFGVAGFAVLFVTSASFAQQQPPPVRVR
Ga0307278_1024835513300028878SoilMDQMTRRAFGAAGFALLLATSATFAQQQSPTVRVRGT
Ga0307277_1004659933300028881SoilMNQMTRRAFGVTGFAVLLVTSASFAQQQPPPVRIRGQIDKIEGDVLDIKARNGDMVK
Ga0307495_1003319213300031199SoilMHGITRRMFCAVGLSLLAATSVSFAQQPETVRVRGTIEA
Ga0318574_1008654913300031680SoilMNQITRRAFGAAGFALLLATSVSFAQQPPPVRVRGTV
Ga0318509_1033449913300031768SoilMDGITRRAFGAAGFALLLATTTTLAQQQSPTVRVRGTIEGVDGPMLTVK
Ga0318526_1048364013300031769SoilMNHMTRRAFGAAGFVLLLATSASYAQQQPPPVRVLLGIT
Ga0318552_1027304523300031782SoilMNQTTRRAFGAAGFALLLATSVSFAQQPPPVRVRGTVEAVDG
Ga0318523_1015400013300031798SoilMNQMTRRIFAMAGFALLLATSASFAQQPPQTVRIRGQIEKVEGDVLD
Ga0318565_1019080323300031799SoilMNQITRRAFGAAGFALLLATSVSFAQQPPPVRVRGTVEA
Ga0318520_1101902823300031897SoilMNQITRRAFGAAGFALLLATSVSFAQQPPPVRVRGTVEAVDGA
Ga0306921_1205293413300031912SoilMDKMTRRAFGAAGFVLLLSTSATLAQQQAPTVRLR
Ga0310906_1060041713300032013SoilMHPMTRRVLCALGLALLSATSASLAQQPAAVRVRGTIEAVDGAM
Ga0318558_1036749123300032044SoilMNQITRRAFGATGFALLLVTSASFAQQPPPVRVRGTVEA
Ga0268251_1033711013300032159AgaveMNQMTRRVFGVAGFAVLLVTSASFGQQQPPPVRVRGTI
Ga0307471_10374285823300032180Hardwood Forest SoilMNKMTRRMFGASGLALMLASSASFAQQSPPVRVRGTVEGVD
Ga0307472_10166692023300032205Hardwood Forest SoilMNQMTRRVFGVVGFVLLLATSASFAQQPPPVRIRGQIDKVEGDVIDIK
Ga0306920_10350096923300032261SoilMNQIARRALGAAGFALLLATSVSFAQQPPPVRVRGTVEAV
Ga0310914_1044030633300033289SoilMNQITRRALGAAGFALLLATSVSFAQQPPPVRVRGT

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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