Metagenome Family F102749

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102749
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	60 residues
Representative Sequence	SNSDYYFGRLADPEDIARFGPLSSPNVRHGNTGDTGDYPSEEVAQMAHSLAVKAITNP
Number of Associated Samples	74
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.95 %
% of genes near scaffold ends (potentially truncated)	91.09 %
% of genes from short scaffolds (< 2000 bps)	97.03 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.040 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.733 % of family members)
Environment Ontology (ENVO)	Unclassified (44.554 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.386 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.40% β-sheet: 0.00% Coil/Unstructured: 68.60%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF04389	Peptidase_M28	8.91
PF13505	OMP_b-brl	2.97
PF04392	ABC_sub_bind	2.97
PF12850	Metallophos_2	1.98
PF07859	Abhydrolase_3	1.98
PF00072	Response_reg	0.99
PF13727	CoA_binding_3	0.99
PF00313	CSD	0.99
PF08734	GYD	0.99
PF07045	DUF1330	0.99
PF13424	TPR_12	0.99
PF03734	YkuD	0.99
PF00067	p450	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.97
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	1.98
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.99
COG2124	Cytochrome P450	Defense mechanisms [V]	0.99
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.99
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.99
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.04 %
Unclassified	root	N/A	3.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.04 %
Unclassified	root	N/A	3.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.04 %
Unclassified	root	N/A	3.96 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	91.09 %
Unclassified	root	N/A	3.96 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.99 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	91.09 %
Unclassified	root	N/A	3.96 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.99 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	59.41 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	19.80 %
Unclassified	root	N/A	3.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	58.42 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	11.88 %
Unclassified	root	N/A	3.96 %
Boseaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae	0.99 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	58.42 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.89 %
Unclassified	root	N/A	3.96 %
Bosea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea	0.99 %
unclassified Parcubacteria group	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group	0.99 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	58.42 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	7.92 %
Unclassified	root	N/A	3.96 %
unclassified Bosea	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea	0.99 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.99 %
Parcubacteria group bacterium Gr01-1014_8	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium Gr01-1014_8	0.99 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	58.42 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	7.92 %
Unclassified	root	N/A	3.96 %
Bosea sp. LC85	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea → Bosea sp. LC85	0.99 %
Bradyrhizobium sp. CCGUVB1N3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	0.99 %
Parcubacteria group bacterium Gr01-1014_8	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium Gr01-1014_8	0.99 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10047403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	966	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1051099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300000956\|JGI10216J12902_114477339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	911	Open in IMG/M
3300002906\|JGI25614J43888_10042630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1405	Open in IMG/M
3300002914\|JGI25617J43924_10039851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1695	Open in IMG/M
3300004268\|Ga0066398_10094757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	684	Open in IMG/M
3300005166\|Ga0066674_10098610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1355	Open in IMG/M
3300005332\|Ga0066388_100742868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1582	Open in IMG/M
3300005332\|Ga0066388_101232942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1282	Open in IMG/M
3300005332\|Ga0066388_102090939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1018	Open in IMG/M
3300005332\|Ga0066388_104060479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	746	Open in IMG/M
3300005332\|Ga0066388_104430965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	715	Open in IMG/M
3300005332\|Ga0066388_105711054	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300005445\|Ga0070708_102055932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300005471\|Ga0070698_101758596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M
3300005713\|Ga0066905_100096135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1997	Open in IMG/M
3300005713\|Ga0066905_100241542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1381	Open in IMG/M
3300005713\|Ga0066905_100531740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	983	Open in IMG/M
3300005713\|Ga0066905_100788249	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300005713\|Ga0066905_101947299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300005764\|Ga0066903_102821359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	943	Open in IMG/M
3300005764\|Ga0066903_103920624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea → Bosea sp. LC85	799	Open in IMG/M
3300005764\|Ga0066903_106859614	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300006034\|Ga0066656_10539721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	759	Open in IMG/M
3300006847\|Ga0075431_102236317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300009088\|Ga0099830_10259339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1377	Open in IMG/M
3300009792\|Ga0126374_11907746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300010043\|Ga0126380_11998815	Not Available	530	Open in IMG/M
3300010048\|Ga0126373_11889265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	660	Open in IMG/M
3300010358\|Ga0126370_10542818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	991	Open in IMG/M
3300010358\|Ga0126370_11288443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	684	Open in IMG/M
3300010361\|Ga0126378_11980869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	664	Open in IMG/M
3300010362\|Ga0126377_10168802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	2071	Open in IMG/M
3300010366\|Ga0126379_10194986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1942	Open in IMG/M
3300010366\|Ga0126379_11700448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	736	Open in IMG/M
3300010398\|Ga0126383_11751950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	710	Open in IMG/M
3300012198\|Ga0137364_10729873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	748	Open in IMG/M
3300012353\|Ga0137367_10094383	All Organisms → cellular organisms → Bacteria	2207	Open in IMG/M
3300012357\|Ga0137384_10424549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1096	Open in IMG/M
3300012362\|Ga0137361_10708770	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium Gr01-1014_8	919	Open in IMG/M
3300012362\|Ga0137361_11579486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	577	Open in IMG/M
3300012948\|Ga0126375_10275982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1153	Open in IMG/M
3300012948\|Ga0126375_11030203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	672	Open in IMG/M
3300012971\|Ga0126369_12297021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300012971\|Ga0126369_12616954	Not Available	589	Open in IMG/M
3300012971\|Ga0126369_13189201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300016270\|Ga0182036_10434361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1029	Open in IMG/M
3300016270\|Ga0182036_11367226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	592	Open in IMG/M
3300016294\|Ga0182041_11183690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	696	Open in IMG/M
3300016341\|Ga0182035_11663995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300016341\|Ga0182035_11966725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300016371\|Ga0182034_10639721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	900	Open in IMG/M
3300016371\|Ga0182034_10703491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	859	Open in IMG/M
3300016387\|Ga0182040_10020333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3669	Open in IMG/M
3300016445\|Ga0182038_10280820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1353	Open in IMG/M
3300016445\|Ga0182038_10514894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1022	Open in IMG/M
3300018433\|Ga0066667_11331063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300018476\|Ga0190274_11988732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	677	Open in IMG/M
3300021560\|Ga0126371_13508632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529	Open in IMG/M
3300024347\|Ga0179591_1036826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1974	Open in IMG/M
3300026304\|Ga0209240_1209255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	590	Open in IMG/M
3300026537\|Ga0209157_1129553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1157	Open in IMG/M
3300026547\|Ga0209156_10467573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300027646\|Ga0209466_1021470	Not Available	1341	Open in IMG/M
3300027862\|Ga0209701_10259041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1014	Open in IMG/M
3300027874\|Ga0209465_10090013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1500	Open in IMG/M
3300031545\|Ga0318541_10063694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1919	Open in IMG/M
3300031545\|Ga0318541_10262465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	960	Open in IMG/M
3300031640\|Ga0318555_10670843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300031679\|Ga0318561_10588863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	612	Open in IMG/M
3300031719\|Ga0306917_10288555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1265	Open in IMG/M
3300031719\|Ga0306917_10537836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	918	Open in IMG/M
3300031719\|Ga0306917_11537267	Not Available	511	Open in IMG/M
3300031723\|Ga0318493_10479132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	686	Open in IMG/M
3300031724\|Ga0318500_10426628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	661	Open in IMG/M
3300031747\|Ga0318502_10646698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	638	Open in IMG/M
3300031747\|Ga0318502_10901038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300031751\|Ga0318494_10773594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	562	Open in IMG/M
3300031781\|Ga0318547_10355402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	895	Open in IMG/M
3300031796\|Ga0318576_10592822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300031797\|Ga0318550_10189621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	993	Open in IMG/M
3300031797\|Ga0318550_10545258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	558	Open in IMG/M
3300031798\|Ga0318523_10287170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	821	Open in IMG/M
3300031819\|Ga0318568_10452317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	800	Open in IMG/M
3300031821\|Ga0318567_10542617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	660	Open in IMG/M
3300031833\|Ga0310917_10104636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1826	Open in IMG/M
3300031879\|Ga0306919_10377464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1085	Open in IMG/M
3300031879\|Ga0306919_10579531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	865	Open in IMG/M
3300031910\|Ga0306923_10508563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1361	Open in IMG/M
3300031942\|Ga0310916_10622446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	916	Open in IMG/M
3300031954\|Ga0306926_11319105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	841	Open in IMG/M
3300031959\|Ga0318530_10339473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	622	Open in IMG/M
3300031981\|Ga0318531_10346532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	671	Open in IMG/M
3300032010\|Ga0318569_10590734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300032035\|Ga0310911_10291190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	939	Open in IMG/M
3300032042\|Ga0318545_10140011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	857	Open in IMG/M
3300032044\|Ga0318558_10687787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	511	Open in IMG/M
3300032059\|Ga0318533_10554865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	842	Open in IMG/M
3300032068\|Ga0318553_10141004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1245	Open in IMG/M
3300032261\|Ga0306920_100751553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1434	Open in IMG/M
3300033289\|Ga0310914_10791302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	846	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.01%
Host-Associated	Host-Associated	0.99%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.01%
Plants	Host-Associated → Plants	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.20%
Loam	Environmental → Terrestrial → Soil → Loam	18.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_100474031	3300000793	Forest Soil	VIFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGNAGDTGDYPSEEVAQMAHSLAVKAITNP*
AP72_2010_repI_A100DRAFT_10510991	3300000837	Forest Soil	IFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGNTGDTGDYPSEEVAQMAHSLAVKAITNP*
JGI10216J12902_1144773391	3300000956	Soil	SHYSFGRLADPEDIARYGPLSTSPNARHAKTGDTGDYAPEEVAQMAH*
JGI25614J43888_100426301	3300002906	Grasslands Soil	SNSDYNFGRLADPGDIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP*
JGI25617J43924_100398513	3300002914	Grasslands Soil	HVSVIFKPSDSYYNFGRLTDPEDVARYGPLSRSPNVRHAKTGDIDAYPPEEVAQMAHSLAVKAITSP*
Ga0066398_100947572	3300004268	Tropical Forest Soil	DSHYSFGRLADPEDIARYGPLSQSPNVREGKKTGDTGTYPLDEVARMAHTLAVKAVTTT*
Ga0066674_100986102	3300005166	Soil	FKPSDSHYNFGRLADPEDIARYGPLSRSSNVRHGKTGDTGEYPENEVAQMAYTLAVKAVTTT*
Ga0066388_1007428681	3300005332	Tropical Forest Soil	DYHFGRLADPEDIARFGPLSSLNVRHGNTGDTGDYPSEEVAQMAHSLAVKAITTP*
Ga0066388_1012329424	3300005332	Tropical Forest Soil	ADPEDIARHGPLSRSPNARHTKTGDTGDYPSEEVAQMAHTLAVKAVTSP*
Ga0066388_1020909391	3300005332	Tropical Forest Soil	PSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGNTGDYPSEEVAQMAHSLAVKAITNP*
Ga0066388_1040604791	3300005332	Tropical Forest Soil	KPSDSHYSFGRLADPEDIARYGPLSQSPNAREGKTGDTGTYPSDEVARMAHTLAVKAVTTT*
Ga0066388_1044309651	3300005332	Tropical Forest Soil	VRVIFKPSNSDYYFGRLADPKDIARFGPLASPNVRHGNTGDTGDYPSEEVAQMAHSLAAKAITNP*
Ga0066388_1057110542	3300005332	Tropical Forest Soil	VIFKPSDSYYSFERLSDPADIALHGPLSRSSNARHAKTGDTGDYPSEEVAQMAHSLAVKAVTSP*
Ga0070708_1020559321	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	YYNFGRLTDPGDIARHGPLSQSPNVRHAKTGDTDAYPPEEVARMAHLLAVKAITSP*
Ga0070698_1017585961	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	YNFGRLTDPGDIARHGPLSQSPNVRHAKTGDTDAYPPEEVAQMAHLLAVKAITSP*
Ga0066905_1000961351	3300005713	Tropical Forest Soil	YSFGRLADPEDIARYGPLSQSPNVREGKKTGDTGTYPLDEVARMAHTLAVKAVTTT*
Ga0066905_1002415421	3300005713	Tropical Forest Soil	SHVNVIFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGNTGDTGDYPSEEVAQMAHSLAVKAITNP*
Ga0066905_1005317403	3300005713	Tropical Forest Soil	VSVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP*
Ga0066905_1007882492	3300005713	Tropical Forest Soil	MTGVVRVDADISDYNFGRLADPKDIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP*
Ga0066905_1019472991	3300005713	Tropical Forest Soil	SNSDYYFGRLADPEDIARFGPLSSPNVRHGNTGDTGDYPSEEVAQMAHSLAVKAITNP*
Ga0066903_1028213591	3300005764	Tropical Forest Soil	ADPEDIARFGPLSSPNVRHGNAGDTGDYPSEEVAQMAHSLAVKAITNP*
Ga0066903_1039206241	3300005764	Tropical Forest Soil	SRYNFGRLADPEDIAQYGPLSRSVNVRQGETGETGPYPSDEIAHMAYTLAVKAITTP*
Ga0066903_1068596141	3300005764	Tropical Forest Soil	DSYYSFGRLADPEDIARHGPLPRSPNARHTKTGDTGDYPSGEVAQMAHTLAVKAVTGP*
Ga0066656_105397212	3300006034	Soil	FKPSDSHYNFGRLADPEDIARYGPLSRSLNVRHGKTGDTGEYPESEVAQMAHTLAVKAVTTT*
Ga0075431_1022363171	3300006847	Populus Rhizosphere	ADPEDIARHGPLSRSPNVRHAKTGDTGAYPPEEVAQMAHSLAVKAITSP*
Ga0099830_102593392	3300009088	Vadose Zone Soil	FKPSDSYYNFGRLTDPEDVARYGPLSRSPNVRHAKTGDIDAYPPEEVAQMAHSLAVKAITSP*
Ga0126374_119077461	3300009792	Tropical Forest Soil	MTFKPSNSDYNFGRLADPGDIARYGPLSQSPNVRHGNTGDNGDYSPEEVAQMAHSLAVKAITTP*
Ga0126380_119988152	3300010043	Tropical Forest Soil	VIFKPSNSDYTFHRLADAEDIARCGPLSRSPTVGHGDTGDPGDYPSEEVAQMAHSLAVKAITTP*
Ga0126373_118892652	3300010048	Tropical Forest Soil	YVSVIFKPSDSHYSFGRLADPEDIARYGPLSQSPNVREGKTGDTGIYPSDEVASMAHTLAVKAVTTT*
Ga0126370_105428183	3300010358	Tropical Forest Soil	IFKPSDSHYSFGRLADPEDIARYGPLSQSPNVREGKKTGDTGTYPLDEVARMAHTLAVKAVTTT*
Ga0126370_112884431	3300010358	Tropical Forest Soil	HMSVLFKPSDSRYSFGRVADPKEIEQYGPRSRPTNVRHEKTGDTGEYPENEVAQMAHTLAVKAVTTV*
Ga0126378_119808691	3300010361	Tropical Forest Soil	DPEDIARHGPLSRSPNARHTKTGDTGDYLSEEVAQMAHTLAVKAVTSP*
Ga0126377_101688021	3300010362	Tropical Forest Soil	SNSNYYFGRLVDPEDIARFGPLSSPNVRHGNTGDTGEYPSEEVEHMAHSLAVKAITNP*
Ga0126379_101949861	3300010366	Tropical Forest Soil	RLADPEDIARHGPLSQSPSVGHAKTGDTGDYPSEEVAQMAHSLAVKAITTV*
Ga0126379_117004483	3300010366	Tropical Forest Soil	IFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGNTGDAGDYPSEEVARMAYSLAVKAITTP*
Ga0126383_117519501	3300010398	Tropical Forest Soil	PSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP
Ga0137364_107298733	3300012198	Vadose Zone Soil	GRLADPEDIARYGPLLQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAVTSP*
Ga0137367_100943833	3300012353	Vadose Zone Soil	VSVIFKPSNSDYTFHRLADADDIARYGPLSRSPNVEHGDTGDTGDYPSEEVAQMAHSLAVKAITTP*
Ga0137384_104245493	3300012357	Vadose Zone Soil	VSVIFKPSDSYYSFGRLADPEDIARYGPLSQPPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP*
Ga0137361_107087701	3300012362	Vadose Zone Soil	PTDSHYTFDRLTDPEDIARQGPLSPSPNVRHGNTGDTGDYPSEEVAQMARLLAVKAITNP
Ga0137361_115794861	3300012362	Vadose Zone Soil	PTDSHYTFDRLTDPEDIARQGPLSPSPNVRHGNTGDTGDYPAEEVAQMARLLAVKAITNP
Ga0126375_102759823	3300012948	Tropical Forest Soil	DYTFHRLADAEDIARCGPLSRSPTVGHGDTGDTGDYPSEEVAQMAHSLAVKAITNP*
Ga0126375_110302031	3300012948	Tropical Forest Soil	FGRLADPADIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP*
Ga0126369_122970212	3300012971	Tropical Forest Soil	ADPEDIARHGPLSQSPNVRHAKTGDTDIYPPEEVAQMAHTLAVKAITTP*
Ga0126369_126169542	3300012971	Tropical Forest Soil	PEDIARYGPLSQSPNAREGKTRDTGIYPSDEVARMAHTLAVKAVTTT*
Ga0126369_131892011	3300012971	Tropical Forest Soil	RLADPEDIARHGPLSRSPNARHTKTGDTGDYPSEEVAQMAHTLAVKAVTSP*
Ga0182036_104343611	3300016270	Soil	VRLHRQRSRKLCDVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP
Ga0182036_113672261	3300016270	Soil	IFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMAHSLAVKAITNP
Ga0182041_111836902	3300016294	Soil	VSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMAHSLAVKAITNP
Ga0182035_116639951	3300016341	Soil	FGRLADPEDIARHGPLSRSPNARHTKTGDTGDYPSEEVAQMAHTLAVKAVTTP
Ga0182035_119667252	3300016341	Soil	RLADPEDIARYGPLSRSPNVSQGKAGETGTYPSDEVAHMAYALAVKAITTT
Ga0182034_106397212	3300016371	Soil	VSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMARSLAVKAITNP
Ga0182034_107034912	3300016371	Soil	VSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYQDTGDTGDYPSEEVAQMAHSLAVKAITNP
Ga0182040_100203331	3300016387	Soil	SHYSFGRLADPEDIARYGPLSQSPNVREGKTGDTVIYPSDEVARMAHTLAVKAVTTT
Ga0182038_102808204	3300016445	Soil	VIFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGNAGDTGDYPSEEVAQMAHSLAVKAITNP
Ga0182038_105148941	3300016445	Soil	SHVNVIFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHANTGDTGDYPSEEVAQMAHSLAVKAITNP
Ga0066667_113310631	3300018433	Grasslands Soil	VSVYFKPSDSHSNISRLADPEDIGRYGQISRSLNVRHGKTGDTGEYPESEVAQMAHTLAVKAVTTT
Ga0190274_119887321	3300018476	Soil	EDIARYGPLSRSPNMRHGKTGDTGEYQPEEVAQMAHSLAVKAITSSW
Ga0126371_135086322	3300021560	Tropical Forest Soil	DSYYSFGRLADPEDIARHGPLSRSPNARHTKTGDTGDYPSEEVAQMAHTLAVKAVTSP
Ga0179591_10368262	3300024347	Vadose Zone Soil	YTFHRLADAEDIARCGPLSRSPNVGHGDAGDTGDYPSEEVAQMAHSLAVKAITNP
Ga0209240_12092551	3300026304	Grasslands Soil	VSVTFKPSNSDYNFGRLADPGDIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP
Ga0209157_11295531	3300026537	Soil	VSVICKPSDSHYNFGRLADPEDIARYGPLSRSSNVRHGKTGDTGEYPENEVAQMAYTLAVKAVTTT
Ga0209156_104675731	3300026547	Soil	KPTDSDYNFGRLADPEDIARYGPLSRSPNVRHGNTGDTGDYPAEEVAQMAHSLAVKAVTS
Ga0209466_10214702	3300027646	Tropical Forest Soil	MTGVVRVDADISDYNFGRLADPKDIARYGPLSQSPNVRHAKTGDTGDYPSEEVAQMAHSLAVKAITNP
Ga0209701_102590412	3300027862	Vadose Zone Soil	FKPSDSYYNFGRLTDPEDVARYGPLSRSPNVRHAKTGDIDAYPPEEVAQMAHSLAVKAITSP
Ga0209465_100900132	3300027874	Tropical Forest Soil	HYSFGRLADPEDIARYGPLSQSPNAREGKTRDTGIYPSDEVARMAHTLAVKAVTTT
Ga0318541_100636944	3300031545	Soil	VIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITT
Ga0318541_102624654	3300031545	Soil	RNSDYNFVRLANPEDIARYGPLSQSPNVRHGNTTGDYPSEEVARMAHLLAVKAITSP
Ga0318555_106708432	3300031640	Soil	VIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAH
Ga0318561_105888631	3300031679	Soil	GRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMARSLAVKAITNP
Ga0306917_102885551	3300031719	Soil	INETADPVRLHRQRSRKLCDVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP
Ga0306917_105378362	3300031719	Soil	VRLANPEDIARYGPLSQSPNVRHGNTTGDYPSEEVARMAHLLAVKAITSP
Ga0306917_115372671	3300031719	Soil	LVDPEDIARFGPLSSPNLRYRDTGDTGDYPSEEVAQMAHSLAVKAITNP
Ga0318493_104791321	3300031723	Soil	SRKLCDVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP
Ga0318500_104266281	3300031724	Soil	NFVRLADPGDIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQIAHSLAVKAITTP
Ga0318502_106466982	3300031747	Soil	NSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP
Ga0318502_109010381	3300031747	Soil	SVTFKPSNSDYNFGRLADPKDIARYGPLSQSPNVRHGNTGDTGDYSPEEVAQMAHSLAVEAITTP
Ga0318494_107735941	3300031751	Soil	VSVIFKPSDSHYSFGRLADPEDIARYGPLSQSPNVRDGKTGDTGIYPSDEVARMAHTLAVKAVTTT
Ga0318547_103554022	3300031781	Soil	RKLCDVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP
Ga0318576_105928221	3300031796	Soil	YTFHRLADAEDIARYGPLSRSPNVGHGDSGDTSDYPSEEVAQMAHSLAVKAITNS
Ga0318550_101896211	3300031797	Soil	NFVRLADPGDIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP
Ga0318550_105452581	3300031797	Soil	FKPSDSHYSFGRLADPEDIARYGPLSQSPNVREGKTGDTVIYPSDEVARMAHTLAVKAVTTT
Ga0318523_102871701	3300031798	Soil	INRGREINETADPVRLHRQRSRKLCDVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP
Ga0318568_104523173	3300031819	Soil	VIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAI
Ga0318567_105426172	3300031821	Soil	SHVSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDTGDYPSEEVAQMAHSLAVKAITNP
Ga0310917_101046361	3300031833	Soil	DPVRLHRQRSRKLCDVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP
Ga0306919_103774641	3300031879	Soil	VSVIFKPRNSDYNFVRLANPEDIARYGPLSQSPNVRHGNTTGDYPSEEVARMAHLLAVK
Ga0306919_105795312	3300031879	Soil	HVSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDTGDYPSEEVAQMAHSLAVKAITNP
Ga0306923_105085631	3300031910	Soil	PSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMARSLAVKAITNP
Ga0310916_106224461	3300031942	Soil	SHYSFGRLADPEDIARYGPLLQSPNVRHGNTGGHGDYPPDEVAQMAHSLAVKAITTP
Ga0306926_113191053	3300031954	Soil	SNSDYYFGRLVDPEDIARFGPLSSPNLRYQDTGDTGDYPSEEVAQMAHSLAVKAITNP
Ga0318530_103394731	3300031959	Soil	RLADPEDIARYGPLSQSLNVREGKTGDTGIYPSDEVARMAHTLAVKAVTTT
Ga0318531_103465323	3300031981	Soil	SDSYYSFGRLADPEDIARHGPLSRSPNARHTKTGDTGDYPSGEVAQMAHTLAVKAVTGP
Ga0318569_105907341	3300032010	Soil	VNVIFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGNAGDTGDYPSEEVAQMAHSLAVKAITNP
Ga0310911_102911902	3300032035	Soil	AEDIARYGPLSRSPNVGHGDSGDTSDYPSEEVAQMAHSLAVKAITNS
Ga0318545_101400111	3300032042	Soil	IFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP
Ga0318558_106877871	3300032044	Soil	VIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDTGDYPSEEVAQMAHSLAVKAITNP
Ga0318533_105548651	3300032059	Soil	FKPSNTDYTFHRLADAEDIARYGPLSRSPNVGHGDSGDTSDYPSEEVAQMAHSLAVKAITNP
Ga0318553_101410043	3300032068	Soil	SNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMARSLAVKAITNP
Ga0306920_1007515531	3300032261	Soil	SVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMARSLAVKAITN
Ga0310914_107913022	3300033289	Soil	VIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMARSLAVKAITNP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F102749

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences