NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F102793

Metagenome Family F102793

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102793
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 83 residues
Representative Sequence MIPARRVGVAVALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFIEDVYRACLRSRGWTRAQQQAPPPAGWYRGIE
Number of Associated Samples 93
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 15.84 %
% of genes near scaffold ends (potentially truncated) 40.59 %
% of genes from short scaffolds (< 2000 bps) 77.23 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (99.010 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(20.792 % of family members)
Environment Ontology (ENVO) Unclassified
(28.713 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(40.594 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 34.51%    β-sheet: 11.50%    Coil/Unstructured: 53.98%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF03167UDG 11.88
PF09601DUF2459 8.91
PF00691OmpA 2.97
PF07690MFS_1 2.97
PF04392ABC_sub_bind 1.98
PF12697Abhydrolase_6 1.98
PF13662Toprim_4 0.99
PF00496SBP_bac_5 0.99
PF00731AIRC 0.99
PF03551PadR 0.99
PF00034Cytochrom_C 0.99
PF00005ABC_tran 0.99
PF00563EAL 0.99
PF00939Na_sulph_symp 0.99
PF10503Esterase_PHB 0.99
PF02730AFOR_N 0.99
PF01757Acyl_transf_3 0.99
PF02230Abhydrolase_2 0.99
PF04185Phosphoesterase 0.99
PF030614HBT 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0692Uracil-DNA glycosylaseReplication, recombination and repair [L] 11.88
COG1573Uracil-DNA glycosylaseReplication, recombination and repair [L] 11.88
COG3663G:T/U-mismatch repair DNA glycosylaseReplication, recombination and repair [L] 11.88
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 1.98
COG0471Di- and tricarboxylate antiporterCarbohydrate transport and metabolism [G] 0.99
COG1055Na+/H+ antiporter NhaD or related arsenite permeaseInorganic ion transport and metabolism [P] 0.99
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 0.99
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 0.99
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 0.99
COG2200EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)Signal transduction mechanisms [T] 0.99
COG2414Aldehyde:ferredoxin oxidoreductaseEnergy production and conversion [C] 0.99
COG3434c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domainsSignal transduction mechanisms [T] 0.99
COG3511Phospholipase CCell wall/membrane/envelope biogenesis [M] 0.99
COG4943Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domainsSignal transduction mechanisms [T] 0.99
COG5001Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domainSignal transduction mechanisms [T] 0.99

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms99.01 %
UnclassifiedrootN/A0.99 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2228664022|INPgaii200_c0584597All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium581Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c1024377Not Available535Open in IMG/M
3300001661|JGI12053J15887_10531979All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium560Open in IMG/M
3300004268|Ga0066398_10173594All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium554Open in IMG/M
3300004633|Ga0066395_10080653All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1523Open in IMG/M
3300005171|Ga0066677_10682317All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium576Open in IMG/M
3300005172|Ga0066683_10003171All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales7444Open in IMG/M
3300005177|Ga0066690_10042251All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2738Open in IMG/M
3300005180|Ga0066685_10375992All Organisms → cellular organisms → Bacteria → Proteobacteria987Open in IMG/M
3300005186|Ga0066676_10105222All Organisms → cellular organisms → Bacteria1719Open in IMG/M
3300005186|Ga0066676_10122626All Organisms → cellular organisms → Bacteria → Proteobacteria1605Open in IMG/M
3300005330|Ga0070690_100686808All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium785Open in IMG/M
3300005332|Ga0066388_102129756All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1010Open in IMG/M
3300005438|Ga0070701_11117315All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium555Open in IMG/M
3300005445|Ga0070708_100907145All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium827Open in IMG/M
3300005446|Ga0066686_10453099All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium876Open in IMG/M
3300005450|Ga0066682_10035017All Organisms → cellular organisms → Bacteria → Proteobacteria2971Open in IMG/M
3300005451|Ga0066681_10000319All Organisms → cellular organisms → Bacteria14824Open in IMG/M
3300005471|Ga0070698_101931071All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium543Open in IMG/M
3300005529|Ga0070741_10562516All Organisms → cellular organisms → Bacteria1023Open in IMG/M
3300005536|Ga0070697_100381502All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1221Open in IMG/M
3300005540|Ga0066697_10319675All Organisms → cellular organisms → Bacteria909Open in IMG/M
3300005543|Ga0070672_102081128All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium511Open in IMG/M
3300005558|Ga0066698_10444374All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium886Open in IMG/M
3300005568|Ga0066703_10027793All Organisms → cellular organisms → Bacteria3005Open in IMG/M
3300005615|Ga0070702_101708713All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium523Open in IMG/M
3300005764|Ga0066903_100134174All Organisms → cellular organisms → Bacteria3494Open in IMG/M
3300005833|Ga0074472_10109655All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium658Open in IMG/M
3300006041|Ga0075023_100017014All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1969Open in IMG/M
3300006047|Ga0075024_100038831All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1965Open in IMG/M
3300006049|Ga0075417_10045845All Organisms → cellular organisms → Bacteria1871Open in IMG/M
3300006806|Ga0079220_11088669All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300006854|Ga0075425_100208166All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2248Open in IMG/M
3300006903|Ga0075426_10872990All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium678Open in IMG/M
3300006914|Ga0075436_100353095All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1060Open in IMG/M
3300007258|Ga0099793_10274790All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium816Open in IMG/M
3300009012|Ga0066710_100084767All Organisms → cellular organisms → Bacteria4154Open in IMG/M
3300009143|Ga0099792_10700997All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium655Open in IMG/M
3300009792|Ga0126374_11241848All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium599Open in IMG/M
3300009795|Ga0105059_1071650All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium500Open in IMG/M
3300009799|Ga0105075_1013659All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium780Open in IMG/M
3300009815|Ga0105070_1126611All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium516Open in IMG/M
3300009817|Ga0105062_1046678All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium787Open in IMG/M
3300010046|Ga0126384_10359504All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1216Open in IMG/M
3300010322|Ga0134084_10014684All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2032Open in IMG/M
3300010333|Ga0134080_10076338All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1350Open in IMG/M
3300010399|Ga0134127_11055125All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium875Open in IMG/M
3300010403|Ga0134123_10663699All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1013Open in IMG/M
3300012202|Ga0137363_10520439All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1000Open in IMG/M
3300012203|Ga0137399_10114880All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2106Open in IMG/M
3300012203|Ga0137399_10290360All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1349Open in IMG/M
3300012356|Ga0137371_10092299All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2354Open in IMG/M
3300012357|Ga0137384_10876462All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium724Open in IMG/M
3300012361|Ga0137360_10685632All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium879Open in IMG/M
3300012685|Ga0137397_10590851All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium826Open in IMG/M
3300012685|Ga0137397_11110277All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium575Open in IMG/M
3300012918|Ga0137396_10931595All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium634Open in IMG/M
3300012922|Ga0137394_10072787All Organisms → cellular organisms → Bacteria2866Open in IMG/M
3300012922|Ga0137394_11385180All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium564Open in IMG/M
3300012922|Ga0137394_11580813All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium513Open in IMG/M
3300012925|Ga0137419_10935313All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium715Open in IMG/M
3300012930|Ga0137407_11845460All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium576Open in IMG/M
3300012931|Ga0153915_11602209All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium762Open in IMG/M
3300012944|Ga0137410_10416767All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1085Open in IMG/M
3300013297|Ga0157378_10258560All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1669Open in IMG/M
3300015052|Ga0137411_1300815All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2274Open in IMG/M
3300015053|Ga0137405_1273581All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium849Open in IMG/M
3300015245|Ga0137409_10041360All Organisms → cellular organisms → Bacteria4422Open in IMG/M
3300015373|Ga0132257_101365206All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium901Open in IMG/M
3300017657|Ga0134074_1336170All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium555Open in IMG/M
3300018433|Ga0066667_10037147All Organisms → cellular organisms → Bacteria2811Open in IMG/M
3300018433|Ga0066667_11194465All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium661Open in IMG/M
3300018433|Ga0066667_11627061All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium576Open in IMG/M
3300020004|Ga0193755_1120226All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium819Open in IMG/M
3300025923|Ga0207681_10487280All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1008Open in IMG/M
3300026118|Ga0207675_101537647All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium686Open in IMG/M
3300026277|Ga0209350_1011539All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2837Open in IMG/M
3300026316|Ga0209155_1009755All Organisms → cellular organisms → Bacteria4209Open in IMG/M
3300026323|Ga0209472_1028534All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2572Open in IMG/M
3300026324|Ga0209470_1136280All Organisms → cellular organisms → Bacteria1084Open in IMG/M
3300026329|Ga0209375_1138414All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1046Open in IMG/M
3300026333|Ga0209158_1005928All Organisms → cellular organisms → Bacteria6556Open in IMG/M
3300026335|Ga0209804_1135528All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1111Open in IMG/M
3300026342|Ga0209057_1176199All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium621Open in IMG/M
3300027068|Ga0209898_1007715All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1281Open in IMG/M
(restricted) 3300027799|Ga0233416_10182977All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium719Open in IMG/M
3300027873|Ga0209814_10019835All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2720Open in IMG/M
3300027874|Ga0209465_10014004All Organisms → cellular organisms → Bacteria3615Open in IMG/M
3300027894|Ga0209068_10001666All Organisms → cellular organisms → Bacteria11045Open in IMG/M
3300027909|Ga0209382_10598490All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1201Open in IMG/M
3300027909|Ga0209382_12034380All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium550Open in IMG/M
3300027910|Ga0209583_10085810All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1185Open in IMG/M
3300027949|Ga0209860_1029974All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium724Open in IMG/M
3300027961|Ga0209853_1158503All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium543Open in IMG/M
3300028536|Ga0137415_10020275All Organisms → cellular organisms → Bacteria6589Open in IMG/M
3300031170|Ga0307498_10111412All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium858Open in IMG/M
3300031226|Ga0307497_10140608All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium991Open in IMG/M
3300031740|Ga0307468_102341397All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium520Open in IMG/M
3300031820|Ga0307473_10974630All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium617Open in IMG/M
3300032180|Ga0307471_100341921All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1603Open in IMG/M
3300033433|Ga0326726_10293164All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1525Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil20.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil18.81%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand6.93%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere6.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.95%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil4.95%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.95%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds3.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.97%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.97%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.97%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.98%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.98%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.98%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.99%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.99%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.99%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.99%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.99%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.99%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.99%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.99%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.99%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.99%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.99%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.99%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2228664022Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300004268Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBioEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005833Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBKEnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300009795Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_40_50EnvironmentalOpen in IMG/M
3300009799Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30EnvironmentalOpen in IMG/M
3300009815Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10EnvironmentalOpen in IMG/M
3300009817Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026277Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026316Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)EnvironmentalOpen in IMG/M
3300026323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)EnvironmentalOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026342Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)EnvironmentalOpen in IMG/M
3300027068Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60 (SPAdes)EnvironmentalOpen in IMG/M
3300027799 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MGEnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300027949Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50 (SPAdes)EnvironmentalOpen in IMG/M
3300027961Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300031170Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_SEnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
INPgaii200_058459722228664022SoilMIPARRVGVALALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFIEDVYRACLRGRGW
ICChiseqgaiiDRAFT_102437723300000033SoilMQPKARALALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFIEDVYRACLRGRGWTRAQQQAP
JGI12053J15887_1053197923300001661Forest SoilMTPGRRALAAFALLSGLGGCGLHYWGKTGASQDDFNRDSSGCSKEASPQYGIFIEDVYRACLRARGWTRAQQLAPPPAGWYRGI
Ga0066398_1017359413300004268Tropical Forest SoilMSRAQRGVIALALLAGLGGCGLHYWGKTGASQDDFNRDSSACAKEASPQYGVFLEELYRACLRSRGW
Ga0066395_1008065323300004633Tropical Forest SoilRARSAMSRAERGVIALALLAGLGGCGLHYWGKTGASQDDFNRDSSACAKEASPQYGVFLEELYRACLRSPGWARAQQQAPVPAGWYRGIE*
Ga0066677_1068231723300005171SoilTVALLAALGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRGRGWTRAAQQEPPPPGWHRGIE*
Ga0066683_1000317123300005172SoilMTPGRRALGVVVLLVGLGGCGPKFWNKPGATLEDFNRDSAACSKEANTQYGIFVDDVYRACLRDRGWVRASQFEPPPPGWYRGFE*
Ga0066690_1004225133300005177SoilMSGLPSSAARRALVTVALLAALGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRGRGWTRAAQAEPPPPGWHRGIE*
Ga0066685_1037599223300005180SoilMTPGRRALGVVVLLVGLGGCGPKFWNKPGATLEDFNRDSAACSKEANTQYGIFVDDVYRACLRDRGWVRASQFEPPPPGWYRGIE*
Ga0066676_1010522243300005186SoilAGPRRLGRRHARDGVASMTPGRRALGVVVLLVGLGGCGPKFWNKPGATLEDFNRDSAACSKEANTQYGIFVDDVYRACLRDRGWVRASQFEPPPPGWYRGIE*
Ga0066676_1012262613300005186SoilGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRGRGWTRAAQQEPPPPGWHRGIE*
Ga0070690_10068680823300005330Switchgrass RhizospherePVRARHAMIPARRVGVALALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFIEDVYRACLRSRGWTRAQQQAPPPAGWYRGIE*
Ga0066388_10212975623300005332Tropical Forest SoilMIRARRGFVALALVAGLGGCGLHYWGKTGASQDDFNRDSAACAKEASPQYGLFLEDIYRACLKSRGWTRAQQQAPPPAGWYRGIE*
Ga0070701_1111731513300005438Corn, Switchgrass And Miscanthus RhizosphereMIPARRVGVALALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFIEDVYRACLRSRGWTRAQQQAPPPAGWYRGIE*
Ga0070708_10090714513300005445Corn, Switchgrass And Miscanthus RhizosphereMIPARRVGVALALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFIEDVYRACLRSRGWTRAQ
Ga0066686_1045309923300005446SoilMTPGHRALAVVMLLAGLGGCGPKFWNKPGATLEDFNRDSAACSKEANTQYGIFVNDVYRACLGARNWVRAPQGEPPPPGWYRGIE*
Ga0066682_1003501733300005450SoilMSGLPSSAARRALVTVALLAALGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRARGWTRAAQQEPPPPGWHRGIE*
Ga0066681_10000319113300005451SoilMSGLPSSAARRALVTVALLAALGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRGRGWTRAAHQEPPPPGWHRGIE*
Ga0070698_10193107123300005471Corn, Switchgrass And Miscanthus RhizosphereMRVRPPGRACLALSLLISLAALSGCGRHYWSKSGASADDFNRDSAACAKEASPQYGILIQDVYRGCLRTRGWTRAQQIEPVPAGWHRG
Ga0070741_1056251623300005529Surface SoilLGGCGLHYWGKAGASQDEFNRDSAACAKEASPQYGVFIQDRYRDCLRARGWARAQHHEPPAGWYRGIE*
Ga0070697_10038150223300005536Corn, Switchgrass And Miscanthus RhizosphereMRVRPPGRACLALSLLISLAALSGCGRHYWSKSGASADDFNRDSAACAKEASPQYGILIQDVYRGCLRTRGWTRAQQIEPVPAGWHRGIE*
Ga0066697_1031967513300005540SoilGVVVLLVGLGGCGPKFWNKPGATLEDFNRDSAACSKEANTQYGIFVDDVYRACLRDRGWVRASQFEPPPPGWYRGIE*
Ga0070672_10208112813300005543Miscanthus RhizosphereLLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFIEDVYRACLRSRGWTRAQQQAPPPAGWYRGIE*
Ga0066698_1044437423300005558SoilMTPGHRALAVVMLLAGLGGCGPKFWNKPGATLEDFNRDSAACSKEANTQYGIFVNDVYRACLGARNWVRAPRGEPPPPGWYRGIE*
Ga0066703_1002779323300005568SoilMTPRRRALGVVVLLVGLGGCGPKFWNKPGATLEDFNRDSAACSKEANTQYGIFVDDVYRACLRDRGWVRASQFEPPPLGWYRGIE*
Ga0070702_10170871313300005615Corn, Switchgrass And Miscanthus RhizosphereMIPARRVGVALALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFIEDVYRACLRS
Ga0066903_10013417433300005764Tropical Forest SoilMSRAERGVIALALLAGLGGCGLHYWGKTGASQDDFNRDSSACAKEASPQYGVFLEELYRACLRSPGWARAQQQAPVPAGWYRGIE*
Ga0074472_1010965523300005833Sediment (Intertidal)MSLSRRGLIIVALLAALCGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGILIDDTYRHCLRTRGWTRGPQQEPPPAGWYRGIE*
Ga0075023_10001701433300006041WatershedsMTQARRALIAFALLAGLGGCGLHYWGKTGAAQDDFNRDSAACSKEASPQYGIFIDDVYRACLRGRGWTRAQHQAPPPAGFYRGIE*
Ga0075024_10003883133300006047WatershedsMTQGRRALVAFALLAGLGGCGLHYWGKTGASQDDFNRDSAACSKEASPQYGIFIDDVYRACLRNRGWTRVQQQAPPPAGSYRGVE*
Ga0075417_1004584523300006049Populus RhizosphereMIRTRRGFVALALLAGLGGCGLHYWGKTGASQDDFNRDSAACAKEANPQYGLFLEDIYRACLKSRGWTRAQQQAPPPAGWYRGIE*
Ga0079220_1108866923300006806Agricultural SoilGGCGLHYWGKTDASQDDFNRDSAACAKEASPQYGLFLEDIYRACLKSRGWTRAQQQAPPPAGWYRGIE*
Ga0075425_10020816633300006854Populus RhizosphereMIRARRGFVALALLAGLGGCGLHYWGKTGASQDDFNRDSAACAKEANPQYGLFLEDIYRACLKSRGWTRAQQQAPPPAGWYRGIE*
Ga0075426_1087299013300006903Populus RhizosphereMIRTRRGFVALALLAGLGGCGLHYWGKTGASQDDFNRDSAACAKEANPQYGLFLEDIYRACLKS
Ga0075436_10035309523300006914Populus RhizosphereMIRARRGFVALALLTGLGGCGLHYWGKTDASQDDFNRDSAACAKEANPQYGLFLEDIYRACLKSRGWTRAQQQAPPPAGWYRGIE*
Ga0099793_1027479023300007258Vadose Zone SoilMTPGRRALAVVVLLAGLGGCGPKFWNKPGATLEDFNRDSAACAKEATTQYGIFVDDVYRACLHARGWVRASQFEPPPPGWYRGIE*
Ga0066710_10008476743300009012Grasslands SoilMTPGHRALAVVMLLAGLGGCGPKFWNKPGATLEDFNRDSAACSKEANTQYGIFVNDVYRACLGARNWVRAPQGEPPPPGWYRGIE
Ga0099792_1070099723300009143Vadose Zone SoilRARHAMIQARRVGLALALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFLEDVYRACLRSRGWTRAQQQAPPPAGWYRGID*
Ga0126374_1124184823300009792Tropical Forest SoilMTAGLGGCGLHYWGKTGASQDDFNRDSAACAKEASPQYGLFLEDIYRACLKSRGWTRAQQQAPPPAGWYRG
Ga0105059_107165023300009795Groundwater SandMTRGRRALVAVVLLAALSGCGRHFWNKPGAALEEFNRDSAACAKDASPQYGILLDDVYRACLRARGWTRAQQLEPPPAGWYRGIE*
Ga0105075_101365923300009799Groundwater SandMTVWRRARVVALVAATLAGCGLHYWGKPGASLEEFNRDSAACAKDASPQYGILIDDIYRACLRARGWKRAQQQEPLPAGWYRGIE*
Ga0105070_112661113300009815Groundwater SandMTPGRRAFGVLVLLAGLCGCGLQYWNKPGATLDDINRDSSACAKEASPQYGILIDDVYRACLRGRGWVRAPQHAPPPAGWYRGIE*
Ga0105062_104667813300009817Groundwater SandLVVAVLAALGGCGRHFWSKPGASLEEFNRDSAACAKDASPQYGILIDDIYRACLRARGWKRAQQQEPLPAGWYRGIE*
Ga0126384_1035950423300010046Tropical Forest SoilMSRAQRGVIALALLAGLGGCGLHYWGKTGASQDDFNRDSSACAKEASPQYGVFLEELYRACLRSRGWTRAQQQAPVPAGWYRGIE*
Ga0134084_1001468433300010322Grasslands SoilMSGLPSSAARRALVTVALLAALGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRGRGWTRAAQQEPPPPGWHRGIE*
Ga0134080_1007633833300010333Grasslands SoilLVTVALLAALGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRARGWTRAAQQEPPPPGWHRGIE*
Ga0134127_1105512523300010399Terrestrial SoilMIPARRVGVALALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFIEDVYRACLR
Ga0134123_1066369913300010403Terrestrial SoilMIPARRVGVALALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFIEDVYRACLRSRGWTRAQQQAPPPAGW
Ga0137363_1052043923300012202Vadose Zone SoilMIRARRGLIALAVLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQFGIFLEDLYRACLRGRGWTRAQQQAPPPAGWYRGIE*
Ga0137399_1011488033300012203Vadose Zone SoilMTPGRRALAAFALLSGLGGCGLHYWGKTGASQDDFNRDSSGCSKEASPQYGIFIEDVYRACLRARGWTRAQQLAPPPAGWYRGIE*
Ga0137399_1029036023300012203Vadose Zone SoilMTPGHRALSVVVLLAGLGGCGPKFWNKPGATLEDFNRDSAACSKEANAQYGIFVDDVYRACLHARGWVRASQFEPPPPDWYRGIE*
Ga0137371_1009229923300012356Vadose Zone SoilMNGLPSSAARRALVTVALLAALGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRGRGWTRAAQQEPPPPGWHRGIE*
Ga0137384_1087646223300012357Vadose Zone SoilMIQARRVGLALALLAGLGGCGPHYWGKTGASQDDFNRDSSACSKEASPQYGIFLEDVYRACLRSRGWTRAQQQAPPPAGWYRGIE*
Ga0137360_1068563223300012361Vadose Zone SoilALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFLEDVYRACLRSRGWTRAQQQAPPPAGWYRGIE*
Ga0137397_1059085113300012685Vadose Zone SoilMTQSRRALGIVVVLFGLSGCGLHYWGKPGGSQDDFNRDSATCAKEASPQYGIFIGDVYRACL
Ga0137397_1111027713300012685Vadose Zone SoilTGHAMTSARRTLAIVAVLVGLGGCGLHYWAKPGASQDDFNRDSAACAKEASPQYGIFIEDVYRACLRARGWTRTQQQAPPPAGWYRGIE*
Ga0137396_1093159523300012918Vadose Zone SoilMTPGHRALSVVVLLIGLGGCGPKFWNKPGTTLEDFNRDSAACSKEANTQYGIFVDDVYRACLRDRGWVRASQFEPPPPGWYRGIE*
Ga0137394_1007278733300012922Vadose Zone SoilMTPGHRALGVVVLLVGLGGCGPKFWNKPGTTLEDFNRDSAACSKEANTQYGIFVDDVYRACLRDRGWVRASQFEPPPPGWYRGIE*
Ga0137394_1138518023300012922Vadose Zone SoilMTQSRRALGIVVVLFGLSGCGLHYWGKPGGSQDDFNRDSATCAKEASPQYGIFIGDVYRACLRARSWTRAQQQAPPPAGWYRGIE*
Ga0137394_1158081323300012922Vadose Zone SoilGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFLEDVYRACLRSRGWTRAQQQAPPPVGWYRGIE*
Ga0137419_1093531313300012925Vadose Zone SoilMTPGHRALSVVVLLIGLGGCGPKFWNKPGTTLEDFNRDSAACSKEANTQYGIFVDDVYRACLRDRGWVRASQFEPPPPG
Ga0137407_1184546023300012930Vadose Zone SoilLTQSQRALGIVVVLFGLSGCGLHYWGKPGGSQDDFNRDSATCAKEASPQYGIFIGDVYRACLRARSWTRAQQQAPPPAGWYRGIE*
Ga0153915_1160220913300012931Freshwater WetlandsMRLSRRAVIMVALLAALCGCGRQFWNKPGASLEEFNRDSAACAKEASPQYGILIDDTYRHCLRTRGWTRGPQQEPPPAGWYRGIE*
Ga0137410_1041676723300012944Vadose Zone SoilMTQSRRALGIVVVLFGLSGCGLHYWGKPGGSQDDFNRDSATCAKEASPQYGIFIGDVYRACLRARSSTRAQQQAPPPAGWYRGIE*
Ga0157378_1025856023300013297Miscanthus RhizosphereMIPARRVGVAVALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFIEDVYRACLRSRGWTRAQQQAPPPAGWYRGIE*
Ga0137411_130081533300015052Vadose Zone SoilMTSGRRALAAFALLSGLGGCGLHYWGKTGASQDDFNRDSSGCSKEASPQYGIFIEDVYRACLRARGWTRAQQLAPPPAGWYRGIE*
Ga0137405_127358113300015053Vadose Zone SoilPLTQSRRALGIVVVLFGLSGCGLHYWGKPGGSQDKPGGSQDDFNRDSATCAKEASPQYGIFIGDVYRACLRARSWTRAQQQAPPPAGWYRGIE*
Ga0137409_1004136043300015245Vadose Zone SoilLTQSRRALGIVVVLFGLSGCGLHYWGKPGGSQDDFNRDSATCAKEASPQYGIFIEDVYRACLRARDWTRTQQQAPPPAGWYRGIE*
Ga0132257_10136520623300015373Arabidopsis RhizosphereMTQTRRALVAFVLLAGLGGCGLHYWGKTDASQDDFNRDSAACSKEASPQYGIFLEDAYRACLRGRGWTRAQ
Ga0134074_133617013300017657Grasslands SoilRQACARPAGRRRANHAGFAMSGLPSSAARRALVTVALLAALGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRGRGWTRAAQQEPPPPGWHRGIE
Ga0066667_1003714733300018433Grasslands SoilMTPGRRALGVVVLLVGLGGCGPKFWNKPGATLEDFNRDSAACSKEANTQYGIFVDDVYRACLRDRGWVRASQFEPPPPGWYRGIE
Ga0066667_1119446513300018433Grasslands SoilRALVTVALLAALGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRGRGWTRAAQQEPPPPGWHRGIE
Ga0066667_1162706123300018433Grasslands SoilARRALVTVALLAALGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRGRGWTRAGQPEPPPPGWHRGIE
Ga0193755_112022613300020004SoilMRAGPRNRARLALALLIPLAALSGCGRHYWSKSGASADDFNRDSAACAKEASPQYGILIQDVYRGCLRARGWTRAQQMEPVPAGWHRGIE
Ga0207681_1048728023300025923Switchgrass RhizosphereMIPARRVGVALALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFIEDVYRACLRSRGWTRAQQQAPPPAGWYRGIE
Ga0207675_10153764713300026118Switchgrass RhizosphereMIPARRVGVALALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFIEDVYRACLRSRGWTRAQQ
Ga0209350_101153933300026277Grasslands SoilMSGLPSSAARRALVTVALLAALGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRGRGWTRAAQQEPPPPGWHRGIE
Ga0209155_100975513300026316SoilMTPGRRALGVVVLLVGLGGCGPKFWNKPGATLEDFNRDSAACAKEASPQYGIIIAEQYRACLRGRGWTRAAHQEPPPPGWHRGIE
Ga0209472_102853433300026323SoilMSGLPSSAARRALVTVALLAALGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRGRGWTRAAHQEPPPPGWHRGIE
Ga0209470_113628023300026324SoilLLVGLGGCGPKFWNKPGATLEDFNRDSAACSKEANMQYGIFVDDVYRACLRDRGWVRASQFEPPPPGWYRGIE
Ga0209375_113841413300026329SoilMSGLPSSAARRALVTVALLAALGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRGRGWTRAAHQEP
Ga0209158_100592863300026333SoilMTPRRRALGVVVLLVGLGGCGPKFWNKPGATLEDFNRDSAACSKEANTQYGIFVDDVYRACLRDRGWVRASQFEPPPLGWYRGIE
Ga0209804_113552823300026335SoilMSGLPSSAARRALVTVALLAALGGCGRQFWNKPGASLEDFNRDSAACAKEASPQYGIIIAEQYRACLRGRGWTRAAQAEPPPPGWHRGIE
Ga0209057_117619913300026342SoilGVVVLLVGLGGCGPKFWNKPGATLEDFNRDSAACSKEANTQYGIFVDDVYRACLRDRGWVRASQFEPPPPGWYRGIE
Ga0209898_100771523300027068Groundwater SandMTVWRRARVVALVAATLAGCGLHYWGKPGASLEEFNRDSAACAKDASPQYGILIDDIYRACLRARGWKRAQQQEPLPAGWYRGIE
(restricted) Ga0233416_1018297723300027799SedimentAAMTWARRVALAGALLAGLGGCGLHYWSKTGATQDEFNRDSAACAKEASPGYGVFRQELYRVCLHGRGWTRAQQQEPPPAGWYRGIE
Ga0209814_1001983553300027873Populus RhizosphereMIRTRRGFVALALLAGLGGCGLHYWGKTGASQDDFNRDSAACAKEANPQYGLFLEDIYRACLKSRGWTRAQQQAPPPAGWYRGIE
Ga0209465_1001400413300027874Tropical Forest SoilRARSAMSRAERGVIALALLAGLGGCGLHYWGKTGASQDDFNRDSSACAKEASPQYGVFLEELYRACLRSPGWARAQQQAPVPAGWYRGIE
Ga0209068_1000166693300027894WatershedsMTQGRRALVAFALLAGLGGCGLHYWGKTGASQDDFNRDSAACSKEASPQYGIFIDDVYRACLRNRGWTRVQQQAPPPAGSYRGVE
Ga0209382_1059849023300027909Populus RhizosphereMRAGLPGRARVVLALLVLLPALTGCGRHYWSRSGASADDFNRDSAACVKEASPQYGILIQDMYRGCLRARGWTRAQQIEPVPAGWHRGIE
Ga0209382_1203438023300027909Populus RhizosphereMSVRRLGLVVVVLLATLGGCGLHYWGKAGASQDDFNRDSAACAKEASPQYGVFIKDRYRDCLRARGWARAQHHEPPAGWYRGIE
Ga0209583_1008581023300027910WatershedsMTQARRALIAFALLAGLGGCGLHYWGKTGAAQDDFNRDSAACSKEASPQYGIFIDDVYRACLRGRGWTRAQHQAPPPAGFYRGIE
Ga0209860_102997423300027949Groundwater SandMTRGRRALVAVVLLAALSGCGRHFWNKPGAALEEFNRDSAACAKDASPQYGILLDDVYRACLRARGWTRAQQLEPPPAGWYRGIE
Ga0209853_115850323300027961Groundwater SandVAVVLLAALSGCGRHFWNKPGAALEEFNRDSAACAKDASPQYGILLDDVYRACLRTRGWTRAQQLEPPPAGWYRGIE
Ga0137415_1002027553300028536Vadose Zone SoilMTPGRRALAAFALLSGLGGCGLHYWGKTGASQDDFNRDSSGCSKEASPQYGIFIEDVYRACLRARGWTRAQQLAPPPAGWYRGIE
Ga0307498_1011141223300031170SoilMIPARRVGVALALLAGLGGCGLHYWGKTGAAQDDFNRDSSACSKEASPQYGIFLEDVYRTCLRSRGWTRAQQQAPPPAGWYRESSRLWAVGTMRSS
Ga0307497_1014060823300031226SoilMIPARRVGVTLALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGMFIEDVYRACLRSRGWTRAQQQAPPPAGWYRGIE
Ga0307468_10234139713300031740Hardwood Forest SoilMISARRVGVALALLAGLGGCGLHYWGKTGAAQDDFNRDSSACSKEASPQYGIFIEDVYRACLRSRGWTRAQQQAPPPVGWYRGIE
Ga0307473_1097463023300031820Hardwood Forest SoilMTPGRRALAVVVLLAGLGGCGPKFWNKPEATLEDFNRDSSACSKEANTQSGSFVDAVYRACLRARGWVRASQSEPPPPGWYRGIE
Ga0307471_10034192123300032180Hardwood Forest SoilMIPARRVVVALALLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFIEDVYRACLRSRGWTRAQQQPPPAGWYRGIE
Ga0326726_1029316433300033433Peat SoilMIRARHAVVALVLLAGLGGCGLHYWGKTGASQDDFNRDSSACSKEASPQYGIFLEDVYRACLRSRGWTRAQQQAPPPAGWYRGIE

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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