NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F102960

Metagenome Family F102960

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102960
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 53 residues
Representative Sequence MEREVLELLIASKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALQP
Number of Associated Samples 75
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 40.00 %
% of genes near scaffold ends (potentially truncated) 28.71 %
% of genes from short scaffolds (< 2000 bps) 83.17 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (82.178 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(56.436 % of family members)
Environment Ontology (ENVO) Unclassified
(92.079 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(94.059 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 88.68%    β-sheet: 0.00%    Coil/Unstructured: 11.32%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF01243Putative_PNPOx 6.93
PF03551PadR 5.94
PF01522Polysacc_deac_1 3.96
PF00196GerE 2.97
PF00132Hexapep 2.97
PF04542Sigma70_r2 2.97
PF01564Spermine_synth 1.98
PF14602Hexapep_2 1.98
PF10400Vir_act_alpha_C 0.99
PF13524Glyco_trans_1_2 0.99
PF13602ADH_zinc_N_2 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 5.94
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 5.94
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 5.94
COG0726Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 familyCell wall/membrane/envelope biogenesis [M] 3.96
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 2.97
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 2.97
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 2.97
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 2.97

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms82.18 %
UnclassifiedrootN/A17.82 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002561|JGI25384J37096_10221741Not Available553Open in IMG/M
3300002908|JGI25382J43887_10079163All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1768Open in IMG/M
3300005166|Ga0066674_10087542All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1437Open in IMG/M
3300005166|Ga0066674_10090035All Organisms → cellular organisms → Bacteria1418Open in IMG/M
3300005167|Ga0066672_10704118All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium647Open in IMG/M
3300005171|Ga0066677_10124690All Organisms → cellular organisms → Bacteria1389Open in IMG/M
3300005172|Ga0066683_10182259All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1295Open in IMG/M
3300005174|Ga0066680_10219236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1205Open in IMG/M
3300005175|Ga0066673_10496747Not Available718Open in IMG/M
3300005178|Ga0066688_10247233All Organisms → cellular organisms → Bacteria1141Open in IMG/M
3300005178|Ga0066688_10904489Not Available544Open in IMG/M
3300005179|Ga0066684_10032315All Organisms → cellular organisms → Bacteria2864Open in IMG/M
3300005180|Ga0066685_10030834All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3318Open in IMG/M
3300005180|Ga0066685_10779196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium649Open in IMG/M
3300005181|Ga0066678_10033797All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2810Open in IMG/M
3300005181|Ga0066678_10301363All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1049Open in IMG/M
3300005181|Ga0066678_10318248All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1022Open in IMG/M
3300005186|Ga0066676_10044196All Organisms → cellular organisms → Bacteria2502Open in IMG/M
3300005187|Ga0066675_10068262All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2253Open in IMG/M
3300005187|Ga0066675_10646589All Organisms → cellular organisms → Bacteria794Open in IMG/M
3300005446|Ga0066686_10256913All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1180Open in IMG/M
3300005450|Ga0066682_10413009Not Available863Open in IMG/M
3300005451|Ga0066681_10313775All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium960Open in IMG/M
3300005454|Ga0066687_10258647Not Available973Open in IMG/M
3300005540|Ga0066697_10062844All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2122Open in IMG/M
3300005540|Ga0066697_10275576All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium993Open in IMG/M
3300005540|Ga0066697_10379811All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium821Open in IMG/M
3300005552|Ga0066701_10193625All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1244Open in IMG/M
3300005556|Ga0066707_10270173All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1111Open in IMG/M
3300005557|Ga0066704_10149568All Organisms → cellular organisms → Bacteria1565Open in IMG/M
3300005558|Ga0066698_10810832All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium605Open in IMG/M
3300005559|Ga0066700_10355845All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1034Open in IMG/M
3300005559|Ga0066700_10637020Not Available739Open in IMG/M
3300005560|Ga0066670_10088419All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1707Open in IMG/M
3300005566|Ga0066693_10452420All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium526Open in IMG/M
3300005574|Ga0066694_10346827All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium704Open in IMG/M
3300005576|Ga0066708_10085432All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1847Open in IMG/M
3300005576|Ga0066708_10123726All Organisms → cellular organisms → Bacteria1562Open in IMG/M
3300006032|Ga0066696_10032179All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2815Open in IMG/M
3300006032|Ga0066696_10134741Not Available1525Open in IMG/M
3300006032|Ga0066696_10483651All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium812Open in IMG/M
3300006032|Ga0066696_10613602All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium705Open in IMG/M
3300006034|Ga0066656_10312420All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1015Open in IMG/M
3300006794|Ga0066658_10212362All Organisms → cellular organisms → Bacteria1027Open in IMG/M
3300006796|Ga0066665_11115536All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium601Open in IMG/M
3300006800|Ga0066660_10578861All Organisms → cellular organisms → Bacteria940Open in IMG/M
3300009012|Ga0066710_103065402All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium648Open in IMG/M
3300009137|Ga0066709_102189690Not Available762Open in IMG/M
3300010303|Ga0134082_10137041All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium984Open in IMG/M
3300010303|Ga0134082_10222234Not Available777Open in IMG/M
3300010320|Ga0134109_10155256All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium826Open in IMG/M
3300010320|Ga0134109_10273122Not Available644Open in IMG/M
3300010321|Ga0134067_10486671All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium509Open in IMG/M
3300010323|Ga0134086_10493293All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium506Open in IMG/M
3300010325|Ga0134064_10055069All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1227Open in IMG/M
3300010325|Ga0134064_10357821All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium572Open in IMG/M
3300010326|Ga0134065_10063327All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1165Open in IMG/M
3300010335|Ga0134063_10086920All Organisms → cellular organisms → Bacteria1407Open in IMG/M
3300010336|Ga0134071_10565989All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium592Open in IMG/M
3300010337|Ga0134062_10466886Not Available629Open in IMG/M
3300012198|Ga0137364_10144427All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1716Open in IMG/M
3300012200|Ga0137382_10042015All Organisms → cellular organisms → Bacteria2811Open in IMG/M
3300012208|Ga0137376_10198158All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1737Open in IMG/M
3300012208|Ga0137376_10344475All Organisms → cellular organisms → Bacteria1294Open in IMG/M
3300012208|Ga0137376_11310521Not Available614Open in IMG/M
3300012285|Ga0137370_10061092Not Available2045Open in IMG/M
3300015358|Ga0134089_10019700All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2291Open in IMG/M
3300017656|Ga0134112_10201739All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium778Open in IMG/M
3300017657|Ga0134074_1154044All Organisms → cellular organisms → Bacteria → Terrabacteria group804Open in IMG/M
3300018431|Ga0066655_10047260All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2199Open in IMG/M
3300018431|Ga0066655_10339075All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium985Open in IMG/M
3300018431|Ga0066655_10348503All Organisms → cellular organisms → Bacteria972Open in IMG/M
3300018433|Ga0066667_10013339All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4073Open in IMG/M
3300018433|Ga0066667_10356532All Organisms → cellular organisms → Bacteria1165Open in IMG/M
3300018433|Ga0066667_10410816Not Available1097Open in IMG/M
3300018468|Ga0066662_10050505All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2647Open in IMG/M
3300018468|Ga0066662_10377351All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1234Open in IMG/M
3300018482|Ga0066669_10207447All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1507Open in IMG/M
3300018482|Ga0066669_10672491All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium911Open in IMG/M
3300018482|Ga0066669_11098665All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium718Open in IMG/M
3300026295|Ga0209234_1050762All Organisms → cellular organisms → Bacteria1576Open in IMG/M
3300026296|Ga0209235_1101677All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1238Open in IMG/M
3300026297|Ga0209237_1082670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1466Open in IMG/M
3300026300|Ga0209027_1232407All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium591Open in IMG/M
3300026310|Ga0209239_1037181All Organisms → cellular organisms → Bacteria2268Open in IMG/M
3300026322|Ga0209687_1080305Not Available1062Open in IMG/M
3300026325|Ga0209152_10139426All Organisms → cellular organisms → Bacteria → Terrabacteria group923Open in IMG/M
3300026329|Ga0209375_1228255Not Available653Open in IMG/M
3300026329|Ga0209375_1252061All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium591Open in IMG/M
3300026330|Ga0209473_1136361All Organisms → cellular organisms → Bacteria1008Open in IMG/M
3300026342|Ga0209057_1082739All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1353Open in IMG/M
3300026343|Ga0209159_1104386All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1228Open in IMG/M
3300026527|Ga0209059_1059289All Organisms → cellular organisms → Bacteria → Terrabacteria group1668Open in IMG/M
3300026530|Ga0209807_1042735All Organisms → cellular organisms → Bacteria2127Open in IMG/M
3300026538|Ga0209056_10190431All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1514Open in IMG/M
3300026540|Ga0209376_1054117All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2287Open in IMG/M
3300026547|Ga0209156_10174410All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1035Open in IMG/M
3300026548|Ga0209161_10384496All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium619Open in IMG/M
3300026550|Ga0209474_10203583All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1259Open in IMG/M
3300026552|Ga0209577_10572973Not Available700Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil56.44%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil19.80%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil15.84%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.94%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cmEnvironmentalOpen in IMG/M
3300002908Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017656Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015EnvironmentalOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026300Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)EnvironmentalOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)EnvironmentalOpen in IMG/M
3300026330Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)EnvironmentalOpen in IMG/M
3300026342Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)EnvironmentalOpen in IMG/M
3300026343Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)EnvironmentalOpen in IMG/M
3300026527Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)EnvironmentalOpen in IMG/M
3300026530Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25384J37096_1022174113300002561Grasslands SoilMAVLQRDVLELLISSKALIARQARRSRLANSGERVKRIEAELAAYRSQLEPEGLEP*
JGI25382J43887_1007916343300002908Grasslands SoilMAMVQREVLELLISSKALIVRQARRSRLXNSXERVKRIETELAAYRSRLEVEGLKP*
Ga0066674_1008754233300005166SoilMDRELLQLLIDSKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALQP*
Ga0066674_1009003523300005166SoilMALIEREVLELLIASKMLIARQARRSRLANSGERVTRIEAELAAYRLRLAPDGLKP*
Ga0066672_1070411813300005167SoilMPQREVLELLIASKMLIARQARRSRLANSGERVIRIEAELAAYRLRLGPEGLQP*
Ga0066677_1012469023300005171SoilMAVPQREVLELLIASKMLIARQARRSRLANSGERVIRIEAELAAYRLRLAPDGLKP*
Ga0066683_1018225913300005172SoilMDRELLQLLIASKMLIARQARRSRMANSGERVRRIEAELAAYRSQLEPRALEL*
Ga0066680_1021923633300005174SoilMDRELLQLLIASKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALEL*
Ga0066673_1049674723300005175SoilMAVIEREVLELLIASKMLIARQARRSRLANSGERVTRIEAELAAYRLRLAPDGLKP*
Ga0066688_1024723313300005178SoilMAVPQREVLELLISSKMLIARQARRSRLANSGERVIRIEAELAAYRLRLAP
Ga0066688_1090448913300005178SoilTGAPVMEREVLELLIASKMLIARQARRSRLANSGERVQRIEAELAAYRSQLKPQALDP*
Ga0066684_1003231543300005179SoilMDRDLLQLLIASKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALEH*
Ga0066685_1003083443300005180SoilMDRELLQLLIDSKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALEP*
Ga0066685_1077919623300005180SoilMAVPQREVLELLIASKMLIARQARRSRLANSGERVVRIEAELAAYRLRLEPE
Ga0066678_1003379713300005181SoilMEREVLELLIASKMLIARQARRSRLANSGERVQRIEAELAAYRSQLKPQALDP*
Ga0066678_1030136323300005181SoilMDRELLQLLIDSKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALEL*
Ga0066678_1031824813300005181SoilMAVPQREVLELLISSKMLIARQARRSRLANSGERVIRIEAELAAYRLRLGPEGLQP*
Ga0066676_1004419623300005186SoilVLQRDVLELLISSKALIARQARRSRLANSGERVKRIEAELAAYRSQLEPGGLKP*
Ga0066675_1006826213300005187SoilMEREVLELLIASKMLIARQARRSRLANSGERVQRIEAELAAFRSQLTLQALDP*
Ga0066675_1064658923300005187SoilMAVPQREVLELLISSKMLIARQARRSRLANSGERVIRIEAELAAYRLRLAPDGLKP*
Ga0066686_1025691323300005446SoilMDRDLLQLLIASKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALEP*
Ga0066682_1041300913300005450SoilMAVIEREVLELLIASKMLIARQARRSRLANSGERVIRIEAELAAYRLRLAPDGLKP*
Ga0066681_1031377523300005451SoilMDRELLQLLIASKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALEP*
Ga0066687_1025864713300005454SoilMMERDLLDRLIASKMLIARQARRSRLANSGERVKRIEAELAAYRS
Ga0066697_1006284433300005540SoilMEREVLELLIASKMLIVRQARRSRLANSGDRVQRIEAELVAYRSQLTLQALDP*
Ga0066697_1027557613300005540SoilMPQREVLELLIASKMLIARQARRSRLANSGERVVRIEAELAAYRLRLAPDGLK
Ga0066697_1037981123300005540SoilIARQARRSRLANSGERVIRIEAELAAYRLRLAPDGLKP*
Ga0066701_1019362513300005552SoilEREVLELLIALKMLIARQARRSRLANSGDRVQRIEAELAAYRSQLKPRALDL*
Ga0066707_1027017333300005556SoilMEREVLELLIASKMLIARQARRSRMANSVERVGRIEAELAAYRAQLEPRGLEP*
Ga0066704_1014956823300005557SoilMAVPQREVLELLIASKMLIARQARRSRLANSGERVIRIEAELAAYRLRLEPEGLQP*
Ga0066698_1081083223300005558SoilMDRDLLQLLIASKMLIARQARRSRMANSGERVQRIEAELAAYRAQLEPRALES*
Ga0066700_1035584533300005559SoilMEREVLELLIASKMLIARQARRSRLANSGDRVQRLEAELAAYRSQL
Ga0066700_1063702023300005559SoilSKMLIARQARRSRLANSGERVIRIEAELAAYRLRLGPEGLQP*
Ga0066670_1008841943300005560SoilMDRELLQLLIDSKMLIARQARRSRMANSGERVQRIEAELAAYRAQLEPRALES*
Ga0066693_1045242013300005566SoilIMDRELLQLLIASKMLIARQARRSRMANSGERVRRVEAELAAYRAQLEPRALEL*
Ga0066694_1034682713300005574SoilRELLQLLIASKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALEP*
Ga0066708_1008543243300005576SoilMDRELLQLLIDSKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEP
Ga0066708_1012372623300005576SoilMAVIEREVLELLIASKMLIARQARRSRLANSGERVTRIEAELAAYRLRLAPDGLK
Ga0066696_1003217913300006032SoilPVMEREVLELLIASKMLIARQARRSRMANSSERVGRIEAELAAYRAQLEPRGLEP*
Ga0066696_1013474123300006032SoilMEREVLELLIASKMLIARQARRSRLANSGDRVQRIEAELVAYRSQLTLQALDP*
Ga0066696_1048365113300006032SoilARQARRSRLANSGERVTRIEAELAAYRLRLAPDGLKP*
Ga0066696_1061360223300006032SoilMDRELLQLLIDSKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALES*
Ga0066656_1031242033300006034SoilMDRELLQLLIDSKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALEH*
Ga0066658_1021236213300006794SoilMAVPQREVLELLIASKMLIARQARRSRLANSGERVIRIEAELAAYRLRLGPEGLQP*
Ga0066665_1111553613300006796SoilREVLELLIASKMLIARQARRSRMANSVERVGRIEAELAAYRAQLEPRGLEP*
Ga0066660_1057886123300006800SoilMAVPQREVLELLIASKMLIARQARRSRLANSGERVIRIEAELAAYRLRLEPEGLEP*
Ga0066710_10306540223300009012Grasslands SoilMDRDLLQLLIASKMLIARQARRSRMANSGERVQRIEAELAAYRAQLEPRALES
Ga0066709_10218969023300009137Grasslands SoilMPQREVLELLIASKMLIARQARRSRLANSGERVVRIEAELAAYRLRLAPDGLKP*
Ga0134082_1013704113300010303Grasslands SoilMDRELLQLLIDSKMLIARQARRSRMANSGERVRRIEAELAAYRAQL
Ga0134082_1022223423300010303Grasslands SoilIASKMLIARQARRSRLANSGERVTRIEAELAAYRLRLAPDGLKP*
Ga0134088_1050273433300010304Grasslands SoilRQARRSRMANSGERVRRIEAELAAYRAQLEPRALEL*
Ga0134109_1015525613300010320Grasslands SoilREVLELLIASKMLIARQARRSRMANSSERVGRIEAELAAYRAQLEPRGLEP*
Ga0134109_1027312223300010320Grasslands SoilMLIARQARRSRLANSGERVIRIEAELAAYRLRLAPDGLKP*
Ga0134067_1048667113300010321Grasslands SoilMAVIEREVLELLIASKMLIARQARRSRLANSGERVIRIEAELAAYRLRLEPEGLAP*
Ga0134086_1049329313300010323Grasslands SoilMDRELLQLLIDSKMLIARQARRSRMANSGERVQRIEAELAAYRAQLEPRALEH*
Ga0134064_1005506913300010325Grasslands SoilKMLIARQARRSRLANSGERVIRIEAELAAYRLRLAPDGLKP*
Ga0134064_1035782123300010325Grasslands SoilMEREVLELLIASKMLIARQARRSRMANSSERVGRIEAELAAYRAQLEPRGLEP*
Ga0134065_1006332723300010326Grasslands SoilMPQREVLELLIASKMLIARQARRSRLANSGERVIRIEAELAAYRLRLAPDGLKP*
Ga0134063_1008692023300010335Grasslands SoilMPQREVLELLISSKMLIARQARRSRLANSGERVIRIEAELAAYRLRLGPEGLQP*
Ga0134071_1056598913300010336Grasslands SoilVLQRDVLELLISSKALIARQARRSRLANSGERVKRIEAELAAYRSQLERGGLEP*
Ga0134062_1046688623300010337Grasslands SoilLIARQARRSRLANSGERVIRIEAELAAYRLRLAPDGLKP*
Ga0137364_1014442733300012198Vadose Zone SoilMDHELLRLLIDSKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALEP*
Ga0137382_1004201523300012200Vadose Zone SoilMAMPQREVLELLIASKMLIARQARRSRLANSGERVTRIEAELAAYRLRLAPDGLKP*
Ga0137376_1019815823300012208Vadose Zone SoilMTVLQRDVLELLISSKALIARQARRSRLADSGERVKRIEAELAAYRSQLEPEGIEP*
Ga0137376_1034447523300012208Vadose Zone SoilMAMPQREVLELLIASKMLIARQARRSRLANSGERVIRIEAELAAYRLRLAPDGLKP*
Ga0137376_1131052123300012208Vadose Zone SoilMAMPQREVLELLIASKMLIARQARRSRLANSGERVIRIEAELAAYRLRLGPEGLQP*
Ga0137370_1006109223300012285Vadose Zone SoilMAVIEREVLELLIASKMLIARQARRSRLANSGERVVRLEAELAAYRLQLGPEGLQP*
Ga0134089_1001970033300015358Grasslands SoilVLQREVLELLISSKALIARQARRSRLANSGERVKRIEAELAAYRSQLEPGGLKP*
Ga0134112_1020173923300017656Grasslands SoilLELLISSKALIARQARRSRLANSGERVKRIEAELAAYRSQLEPGGLKP
Ga0134074_115404423300017657Grasslands SoilMDRELLQLLIDSKMLIARQARRSRMTNSGERVRRIEAELAAYRAQLEPRALQP
Ga0066655_1004726023300018431Grasslands SoilVLQRDVLELLISSKALIARQARRSRLANSGERVKRIEAELAAYRSQLEPGGLKP
Ga0066655_1033907533300018431Grasslands SoilMEREVLELLIASKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALQP
Ga0066655_1034850323300018431Grasslands SoilMAVPQREVLELLISSKMLIARQARRSRLANSGERVIRIEAELAAYRLRLAPDGLKP
Ga0066667_1001333943300018433Grasslands SoilMDRELLQLLIDSKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALEL
Ga0066667_1035653223300018433Grasslands SoilMAVIEREVLELLIASKMLIARQARRSRLANSGERVTRIEAELAAYRLRLAPDGLKP
Ga0066667_1041081623300018433Grasslands SoilMEREVLELLIASKMLIARQARRSRLANSGERVQRIEAELAAYRSQLKPQALNP
Ga0066662_1005050533300018468Grasslands SoilMEREVLELLIASKMLIARQARRSRLANSGERVQRIEAELAAYRSQLKPQALDP
Ga0066662_1037735123300018468Grasslands SoilMAVPQREVLELLISSKMLIARQARRSRLANSGERVIRIEAELAAYRLRLGPEGLQP
Ga0066669_1020744733300018482Grasslands SoilMDRELLQLLIDSKMLIARQARRSHMTNSGERVRKIEAELAAYRAQLEPRALEH
Ga0066669_1067249113300018482Grasslands SoilMDRELLQLLIDSKMLIARQARRSRMTNSGERVRRIEAELAAYRAQLEPRALEP
Ga0066669_1109866523300018482Grasslands SoilMDRELLQLLIASKMLIARQARRSRMANSGERVRRVEAELAAYRAQLEPRALEP
Ga0209234_105076223300026295Grasslands SoilMAVPQREVLELLIASKMLIARQARRSRLANSGERVIRIEAELAAYRSQLEPGGLKP
Ga0209235_110167723300026296Grasslands SoilMAVLQRDVLELLISSKALIARQARRSRLANSGERVKRIEAELAAYRSQLEPEGLEP
Ga0209237_108267023300026297Grasslands SoilMAMVQREVLELLISSKALIVRQARRSRLPNSGERVKRIETELAAYRSRLEVEGLKP
Ga0209027_123240723300026300Grasslands SoilMAVIEREVLELLIASKMLIARQARRSRLANSGERVTRIEAELAAYRSRLEPEGLEP
Ga0209239_103718123300026310Grasslands SoilMAMPQREVLELLIASKMLIARQARRSRLANSGERVTRIEAELAAYRSRLEPEGLEP
Ga0209687_108030513300026322SoilLESAAAVMMERDLLDRLIASKMLIARQARRSRLANSGERVKRIEAELAAYRS
Ga0209152_1013942623300026325SoilMMERDLLDRLIASKMLIARQARRSRLANSGERVKRIEAELAAYRSRLDLCLYHGGLDT
Ga0209375_122825523300026329SoilREVLELLIASKMLIARQARRSRLANSGERVIRIEAELAAYRLRLAPDGLKP
Ga0209375_125206133300026329SoilLQLLIDSKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALEP
Ga0209473_113636123300026330SoilMAVIEREVLELLIASKMLIARQARRSRLANSGGRVTRIEAELAAYRLRLAPDGLKP
Ga0209057_108273943300026342SoilMEREVLELLIASKMLIARQARRSRMANSSERVGRIEAELAAYRAQLEPRGLEP
Ga0209159_110438623300026343SoilMDRELLQLLIDSKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALQP
Ga0209059_105928933300026527SoilMMERDLLDRLIASKMLIARQARRSRLANSGERVKRIEAELAAYRSRLDLCLYHGGPDT
Ga0209807_104273533300026530SoilMAVIEREVLELLIASKMLIARQARRSRLANSGERVIRIEAELAAYRLRLAPDGLKP
Ga0209056_1019043133300026538SoilMEREVLELLIASKMLIARQARRSRMANSVERVGRIEAELAAYRAQLEPRGLEP
Ga0209376_105411743300026540SoilMDRELLQLLIDSKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRALEP
Ga0209156_1017441013300026547SoilMDRELLQLLIASKMLIARQARRSRMANSGERVRRIEAELAAYRSQLEPRALEL
Ga0209161_1038449613300026548SoilMDRELLQLLIDSKMLIARQARRSRMANSGERVRRIEAELAAYRAQLEPRGL
Ga0209474_1020358323300026550SoilLLIASKMLIARQARRSRLANSGERVIRIEAELAAYRLRLAPDGLKP
Ga0209577_1057297323300026552SoilMAVPQREVLELLIASKMLIARQARRSRLANSGERVIRIEAELAAYRLRLEPEGLQP

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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