Metagenome / Metatranscriptome Family F102979

Basic Information
Family ID	F102979
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	66 residues
Representative Sequence	VSNRVEPKPQPMPLDRAILWNPPAAPGATSPGGRSSSRAPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIG
Number of Associated Samples	87
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.99 %
% of genes from short scaffolds (< 2000 bps)	0.99 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Most Common Taxonomy
Group	Unclassified (99.010 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (21.782 % of family members)
Environment Ontology (ENVO)	Unclassified (41.584 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.515 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.26% β-sheet: 0.00% Coil/Unstructured: 73.74%
Feature Viewer

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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01212	Beta_elim_lyase	62.38
PF03631	Virul_fac_BrkB	25.74
PF12732	YtxH	1.98
PF02887	PK_C	0.99
PF01116	F_bP_aldolase	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1167	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain	Transcription [K]	124.75
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	62.38
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	62.38
COG0112	Glycine/serine hydroxymethyltransferase	Amino acid transport and metabolism [E]	62.38
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	62.38
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	62.38
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	62.38
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	62.38
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	62.38
COG1003	Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	Amino acid transport and metabolism [E]	62.38
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	62.38
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	62.38
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	62.38
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	62.38
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	62.38
COG3033	Tryptophanase	Amino acid transport and metabolism [E]	62.38
COG4992	Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase	Amino acid transport and metabolism [E]	62.38
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	25.74
COG0191	Fructose/tagatose bisphosphate aldolase	Carbohydrate transport and metabolism [G]	0.99
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.99

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
All Organisms	root	All Organisms	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
cellular organisms	root	All Organisms → cellular organisms	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.99 %

Scaffold	Taxonomy	Length	IMG/M Link
3300017654\|Ga0134069_1130357	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	832	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.05%
Host-Associated	Host-Associated	4.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.17%
Aquatic	Environmental → Aquatic	11.88%
Plants	Host-Associated → Plants	4.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.17%
Sediment	Environmental → Aquatic → Sediment	9.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.95%
Freshwater	Environmental → Aquatic → Freshwater	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.90%
Loam	Environmental → Terrestrial → Soil → Loam	9.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.95%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	30.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.99%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	21.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.92%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.97%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.99%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.99%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004780	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare1Fresh	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011395	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT200_2	Environmental	Open in IMG/M
3300012034	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT526_2	Environmental	Open in IMG/M
3300012167	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT333_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014866	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT890_16_10D	Environmental	Open in IMG/M
3300015248	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT530_16_10D	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300024325	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25612J43240_10052281	3300002886	Grasslands Soil	VTRPEPKSQPMPLDRAILWNPPAAPGATSPGGKSTSRSPYPIFFQQEAVIALQEHL
JGI25382J43887_102029383	3300002908	Grasslands Soil	MPVDRSILWNPSLPGARPSAGGRAPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDV
soilL2_101139793	3300003319	Sugarcane Root And Bulk Soil	MSRKPDPPLQAMPLDRSILWNPLAPGAEKAEGKTRAPYPIFFQQEAVI
Ga0062378_100903401	3300004780	Wetland Sediment	MTNRLEPKKQPMPMERAILWNPPAAPGSTSPGRPSGRSPYPIFFQQEAVIALQEHLKSS
Ga0066673_106950731	3300005175	Soil	VSARPEPRAQVMPMDRAILWNPPAAPGTTSPGRPSSRSPYPIFFQQEAVIALQDHIKSSPTQAI
Ga0066690_101436664	3300005177	Soil	MSERPEPRSQPMPMDRAILWNPPAAAGATGPGRPTGRSPYPVFFQQEAVIAL
Ga0066688_108449071	3300005178	Soil	MSERPEPRSQPMPMDRAILWNPPAAAGATGPGRPTGRSPYPVFFQQEAVIALQEHLKSS
Ga0066676_104742192	3300005186	Soil	VSNRVEPKPQPMPLDRAILWNPPAAPGATSPGGRSSSRAPYPIFFQQEAVIALQEHLKSS
Ga0070680_1008932952	3300005336	Corn Rhizosphere	MSQKPDPQLQAMPLDRSILWNPLAPGAEKAEGKTRAPYPIFFQQEAVIALQEHVKGSPTQ
Ga0070703_102151842	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MTPGRLEPKLQAMPLDRAILWNPPAAPGSTNPGRPSTRSPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDAYRDPETGV
Ga0070705_1001874743	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSPRPEPKSQPMPLDRSILWNPSIPGAKQTEGTSRAPYPVFFQQEAVIALQEHVKGSPTQAIFGFLV
Ga0070705_1011537391	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTPGRLEPKLQAMPLDRAILWNPPAAPGSTNPGRPSTRSPYPIFFQQEAVIALQEH
Ga0070706_1014072112	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTPGRLEPKLQAMPLDRAILWNPPAAPGSTNPGRPSTRSPYPIFFQQEAVIALQE
Ga0070707_1016021042	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VTAPAPVSQAMPMERAILWNPVKKEGAGRPSGRAPYPVFFQQEAVAALQDHLKASPQ
Ga0066697_101207381	3300005540	Soil	VSNRVEPKPQPMPLDRAILWNPPAAPGSTSPGGRSSSRAPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDVYRDPEN
Ga0070695_1001401451	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MSPKPEAQSQAMPLDRSILWNPSMPGVEKSEGASRAPYPIFFQQEAVIALQ
Ga0066701_100458271	3300005552	Soil	VSTRPEPKSQPMPMDRAILWNPPAAAGTTSPGGRSTSRSPYPIFFQQEAVIALQEHIKSSPTQAIFGFLIGDVYRDP
Ga0066701_100654031	3300005552	Soil	MSDRPEPRSQPMPMDRSILWNPPAAPGTTSPGGRSTTRSPYPIFFQQEAVIAL
Ga0066661_104005012	3300005554	Soil	MSERPEPRSQPMPMDRAILWNPPAAAGATGPGRPTGRSPYPVFFQQEAVIALQEHLKSSPTQAIFGFLIGDVYRDPET
Ga0066700_105046891	3300005559	Soil	VTTPPPDRPAPKLQAMPVDRSILWNPSLPGARPSAGGRAPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDVYRDPE
Ga0066699_100357335	3300005561	Soil	VTDRSAPKLQAMPTERSILWNPSLPGARPSGGRAPYPIFFQQEAVIALQEHLKS
Ga0066699_102063311	3300005561	Soil	MSERPEPRSQPMPMERAILWNPPAAAGVTGPGRPSGRSPYPVFFQQEAVIALQEHLKSSPTQAIFGFLIGDVYRDPET
Ga0066693_101860831	3300005566	Soil	MSHRPEPKTQPMPLERAILWNPPAAPGSTSPGKSSTRTPYPIFFQQEAVIALQDHIKSSPTQAIFGFLIGDLYRDP
Ga0066693_103302952	3300005566	Soil	MSERPEPRSQPMPMERAILWNPPAAAGVTGPGRPSGRSPYPVFFQQEAV
Ga0066651_101693083	3300006031	Soil	VSTPPKTLSMPLERAILWNPPVAGGGGTTNPGKSSSRTPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDVYRDPEAGALYTII
Ga0066656_106215152	3300006034	Soil	VSTRVEPKPQPMPLDRAILWNPPAAPGSTSPGGRSTSRSPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDVYRDPENGA
Ga0066653_107038751	3300006791	Soil	VSTRPEPRAQEMPLDRAILWNPPAAPGTTSPGRPSSRSPYPIFFQQEAVIALQDHIKSSPTQAIFGFLIGDVYRDPET
Ga0066665_106680231	3300006796	Soil	MPVDRSILWNPSLPGARPSAGGRAPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDVYRDPET
Ga0075421_1008750781	3300006845	Populus Rhizosphere	LTAPTTHTPQPMPMDRAILWNPVKKEGAGGGRPSGRAPYPVFFQQEAVVALQDHLKASPQQAIFGFLIGTLFR
Ga0075426_103731452	3300006903	Populus Rhizosphere	VSARPDPRPQAMPLDRAILWNPPAAPGTTSPGRQTSRSPYPIFFQQEAVIALQDHIKSSPTQAIFGFLIGDVYRDPETGV
Ga0075426_104501372	3300006903	Populus Rhizosphere	VSPRPEPKSQPMPLERAILWNPPAAGGTTNPGKSSSRSPYPIFFQQEAVIALQEHLKSSPTQ
Ga0075424_1001496061	3300006904	Populus Rhizosphere	VSRAEPKSQPMPMDRAILWNPPAAPGATSPGGKSTSRSPYPIFFQQEAVIALQDHLKSSPTQAIFGFLIGDVYR
Ga0079219_103758932	3300006954	Agricultural Soil	VSARPDPRPQPMPMDRAILWNPPAAPGTTSPGRQTSRSPYPIFFQQEAVIALQDHI
Ga0099791_103876802	3300007255	Vadose Zone Soil	MDRAILWNPPAAPGTTSPGKASSRTPYPIFFQQEAVIALQDHIKSSPTQAVFGFLIGDVYRDP
Ga0066710_1003338931	3300009012	Grasslands Soil	MPVDRSILWNPSLPGSRPSGGGRAPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDVYRDPETGV
Ga0066710_1031655792	3300009012	Grasslands Soil	VSNRVEPKPQPMPLDRAILWNPPAAPGSTSPGGRSSSRAPYPIFFQQEAVIALQEHLKSSPTQAIFGFLI
Ga0099828_114671342	3300009089	Vadose Zone Soil	MPLERAILWNPPAVGGTTSPGKSTSRSPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDIYR
Ga0134070_102272421	3300010301	Grasslands Soil	MPMDRAILWNPPAAPGTTSPGRPSSRSPYPIFFQQEAVIALQDHIKSSPTQAIFGFLIGDVYRD
Ga0134088_105000611	3300010304	Grasslands Soil	VSTPPKTLSMPLERAILWNPPVAGGGGTTNPGKSSSRTPYPIFFQQEAVIALQEHLKSSPTQ
Ga0134111_102088441	3300010329	Grasslands Soil	MPMDRAILWNPPAAPGTTSPGGKSTSRSPYPIFFQQEAVIALQEHLKSSPTQAIFGFLI
Ga0134080_104327862	3300010333	Grasslands Soil	MPMDRAILWNPPAAPGATSPGGKSTSRSPYPIFFQQEAVIALQEHLKSSP
Ga0134080_105743921	3300010333	Grasslands Soil	MPLDRAILWNPPAAPGSTSPGGRSTSRSPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDVYRDPENGA
Ga0134071_106052822	3300010336	Grasslands Soil	MSDRPEPRSQPMPMDRSILWNPPAAPGTTSPGGRSTTRSPYPIFFQQEAVIALQDHLKSSPTQAIFGFLIGDVYRDPENGALYTVI
Ga0134071_106327872	3300010336	Grasslands Soil	MPMDRAILWNPPAAPGTTSPGKSTSRSPYPIFFQQEAVIALQDHLKNSPTQAIFGFLIGDVYRDPENGALY
Ga0134062_100599543	3300010337	Grasslands Soil	MTSRSEPKLQAMPMDRAILWNPPAPPGSTNPGRSSNRSPYPIFFQQEAVIALQEHLKSSPTQAIFGFLVGDVYRDPETG
Ga0134123_126591861	3300010403	Terrestrial Soil	MSQKPDPQLQAMPLDRSILWNPLAPGAEKAEGKTRAPYPIFFQQEAVIALQEHVKGSPTQAI
Ga0137315_10556452	3300011395	Soil	MSRKPEPRSQAMPMDRAILWNPSLPGVKSSAGSSRAPYPIFFPQEAVIAL
Ga0137453_10459581	3300012034	Soil	MPMERAILWNPPAAPGTTSPGRPSSRSPYPIFFQQEAVIALQEHLKSSPTQAI
Ga0137319_10361322	3300012167	Soil	MPLDRSILWNPSMPGVEKTEGTTRAPYPIFFQQEAVIALQDHVKGSPTQAIFGFLVG
Ga0137383_101095091	3300012199	Vadose Zone Soil	MDRAILWNPPAAPGTTSPGRPSSRSPYPIFFQQEAVIALQDHIKSSPTQAIFGFLI
Ga0137382_103167021	3300012200	Vadose Zone Soil	VSTPPKTLSMPLERAILWNPPVAGGGGTTNPGKSSSRTPYPIFFQQEAVIALQEHLKSSPTQAI
Ga0137399_104238371	3300012203	Vadose Zone Soil	MPMDLAILWNPPAAAGTTSPGGRSSSRSPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDVYRD
Ga0137374_101056051	3300012204	Vadose Zone Soil	MSPKAEPRPQVMPLDRAILWNPSLPGVKQAGGGRAPYPIFFQQEAVIALQEHVKSSPTQAIFGFLVGDLYRDPENGVL
Ga0137376_105875522	3300012208	Vadose Zone Soil	MTRPEPKSQPMPMDRAILWNPPAAPGATSPGGKSTSRSPYPIFFQQEAVIALQEHLKSSPTQAIFGFL
Ga0137377_115470961	3300012211	Vadose Zone Soil	MPMERAILWNPPAAPGTTAPGRPSSRSPYPIFFQQEAVIALQEHLKSSPTQAIFGF
Ga0137370_101733981	3300012285	Vadose Zone Soil	MSPKTEPRAQPMPMDRAILWNPPAAPGTTQPGRPSTRSPYPIFFQQEAVIAL
Ga0137370_110407961	3300012285	Vadose Zone Soil	MDRAILWNPPAAPGTTSPGRPSSRSPYPIFFQQEAVIALQDHIKSSPTQAIFGFLIGDVYRDPETGVLYT
Ga0137366_100747735	3300012354	Vadose Zone Soil	VSNRVEPKPQPMPLDRAILWNPPAAPGATSPGGRSSSRAPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIG
Ga0137385_112953552	3300012359	Vadose Zone Soil	MPMDRAILWNPPAAPGTTSPGRPSSRSPYPIFFQQEAVIALQDHIKSSPTQAIFGFLIGD
Ga0137373_110941381	3300012532	Vadose Zone Soil	MSPKAEPRPQVMPLDRAILWNPSLPGVKQTGGGRAPYPIFFQQEAVIALQEHVKSSPTQAIFGFLVG
Ga0137396_109962432	3300012918	Vadose Zone Soil	MPMDLAILWNPPAAAGTTSPGGRSSSRSPYPIFFQQEAVIALQEHLKS
Ga0137416_101496103	3300012927	Vadose Zone Soil	MPMDLAILWNPPAAAGTTSPGGRSSSRSPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDVYRDPENGVLYT
Ga0137404_120626202	3300012929	Vadose Zone Soil	MPMERAILWNPATPAAGPRHSGRTAYPVFFQQEAVVALQDHLKASPQQAIFGFLIGTLFRDRETGVLYAVIDK
Ga0137407_102817201	3300012930	Vadose Zone Soil	MPMERAILWNPPAAPGTTAPGRPSSRSPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDLYRDPETGVLYTVIDK
Ga0137410_102341021	3300012944	Vadose Zone Soil	MPMDRAILWNPPAAPGATSPGGKSTSRSPYPIFFQQEAVIALQEHLKSSPTQAIF
Ga0137410_103684311	3300012944	Vadose Zone Soil	MPMERAILWNPVKKESAGRPSGRAPYPVFFQQEAVVALQDHLKASPQQAIFGFLIGTLYRDPDAGVLYA
Ga0137410_115410961	3300012944	Vadose Zone Soil	MTRPEPKSQPMPMDRAILWNPPAAPGATSPGGKSTSRSPYPIFFQQEAVIALQEHLKSSPTQA
Ga0134077_105180831	3300012972	Grasslands Soil	MERAILWNPPAAPGTTSPGGKSTSRSPYPIFFQQEAVIALQEHLKSSPTQAIF
Ga0180090_10682091	3300014866	Soil	MPLDRSILWNPSMPGVEKSEGASRAPYPIFFQQEAVIALQEHVKSSPTQAIFGFLV
Ga0180079_10360371	3300015248	Soil	MPMDRAILWNPIKKEGAGRHSGRAPYPVFFQQEAVVALQDHLKASPEQAIFGFLI
Ga0134069_11303572	3300017654	Grasslands Soil	VSARPEPRSQAMPMERAILWNPPAAPGTTAPGRPSSRSPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDLYRDPETGVLYTVID
Ga0134069_12423342	3300017654	Grasslands Soil	VSTRPEPRAQEMPLDRAILWNPPAAPGTTSPGGKSTSRSPYPIFFQQEAVIALQE
Ga0184634_102817061	3300018031	Groundwater Sediment	MTGKPDAKPLPMPMERAILWNPSLPGARPSGRAPYPVFFQQEAVIALQEHLKSSPR
Ga0184626_100373563	3300018053	Groundwater Sediment	MSPKPELRSQAMPMERAILWNPSLPGVKASGGSNRAPYPIFFQQEAVIALQEHVKSSPTQAIFGFLVGDLYRDPENGVLY
Ga0184618_104888393	3300018071	Groundwater Sediment	VSDARPQPMPMARAILWNPATEGGAGGGVGRVSGRAPYPIFFQQEAVVALQDHLKASPQQAIFGFLAGDVFRDP
Ga0184640_103881691	3300018074	Groundwater Sediment	VTTRPEPKSQPMPMDRAILWNPSLPGARPSGRAPYPIFFQQEAVIALQEHLKGSPTQAIFGFLIGDVYRDPET
Ga0066667_100510405	3300018433	Grasslands Soil	VSPRPEPRAQPMPMDRAILWNPSLPGAKPTGGGRAPYPIFFQQEAVVALQEHVKSSPTQAIFGFLIGD
Ga0066667_111516952	3300018433	Grasslands Soil	VSNRVEPKPQPMPLDRAILWNPPAAPGSTSPGGRSSSRAPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDVYRDPENGALY
Ga0066669_121094031	3300018482	Grasslands Soil	MSTKPEPRSQPMPMDRAILWNPPAAPGARPSGRAPYPIFFQQEAVIALQEHLKSSPTQAI
Ga0210379_101408862	3300021081	Groundwater Sediment	MSPKLEPRSQAMPMDRAILWNPSLPGVKASGGSNRAPYPIFFQQEAVIALQEHVKSSPTQAIF
Ga0193719_103710972	3300021344	Soil	VTAPQTPTPTPQPMPMDRAILWNPAKKEGAGHPSGRAPYPVFFQQEAVVALQDHLKASPQQAIFGFLIGSLFRDPETGVLY
Ga0247678_10143801	3300024325	Soil	MSRKPDPQPQPMPLDRSILWNPLAPGVEKAEGPSRQPYPVFFQQEAVIALQEHVKGSPTQAIFGFLVGEVF
Ga0209519_104325092	3300025318	Soil	VTGKPPSSPEIRPASQPMPMERAILWNPSAQGGGPRASGRAPYPIFFQQEAVVALQDHLKASPE
Ga0207646_101368194	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTPGRLEPKLQAMPLDRAILWNPPAAPGSTNPGRPSTRSPYPIFFQQEAVIALQEHLKSSPTQ
Ga0207646_110039183	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VTAPAPVSQAMPMERAILWNPVKKEGAGRPSGRAPYPVFFQQEAVAALQDHLKASPQQAI
Ga0207686_118517922	3300025934	Miscanthus Rhizosphere	MSRKPDPQPQPMPLDRSILWNPLAPGVEKAEGPSRQPYPVFFQQEAVIALQEHVKGSPTQAIFGFLVGEVFRDPETGALYS
Ga0209236_10388091	3300026298	Grasslands Soil	MSDRPEPRSQPMPMDRSILWNPPAAPGTTSPGGRSTTRSPYPIFFQQEAVIALQDHLKSS
Ga0209131_13100621	3300026320	Grasslands Soil	VTAPSSQTPTPAPQPMPMDRAILWNPVKKEGAGRPSGRAPYPVFFQQEAVVALQDHLKASPQQAIFGFLAGTLFRDPETGVLYAV
Ga0209472_13006372	3300026323	Soil	VTRPEPKSQPMPMDRAILWNPPAAPGATSPGGKSTSRSPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDVY
Ga0209470_11046473	3300026324	Soil	VTAQIDARPQAMPMDRAILWNPTGEGPRVSGRAPYPVFFQQEAVVALQEHLKSSPQQAIFGFLAGDV
Ga0209803_13053421	3300026332	Soil	VSNRVEPKPQPMPLDRAILWNPPAAPGATSPGGRSSSRAPYPIFFQQEAVIALQEHLKSSPTQAI
Ga0209807_11448233	3300026530	Soil	VSTRPEPKSQPMPMDRAILWNPPAAAGTTSPGGRSTSRSPYPIFFQQEAVIALQEHIKSSPTQAIF
Ga0209058_13261901	3300026536	Soil	VSRPEPKSQPMPMERAILWNPPAAPGTTSPGGKSTSRSPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDVYRDPE
Ga0209805_12972411	3300026542	Soil	MSERPEPRSQPMPMERAILWNPPAAAGVTGPGRPSGRSPYPVFFQQEAVIALQEHLKSSPTQAIFGFLIS
Ga0208454_10132583	3300027573	Soil	MSPRPEPQSQAMPLDRSILWNPSMPGVEKSEGASRAPYPIFFQQEAVIALQEHVK
Ga0209180_104626931	3300027846	Vadose Zone Soil	MSDRPEPRSQPMPMDRSILWNPPAAPGTTSPGGRSTSRSPYPIFFQQEAVIALQDHLKSSPTQAIFGFLIGDVYRDPENGALYTV
Ga0209166_102725342	3300027857	Surface Soil	VSAQPKSQPMPLERAILWNPPAAAGAATNPGKEKSSSRTPYPIFFQQEAVIALQDHIKSSPTQAIFGFLIGDIY
Ga0307293_101501372	3300028711	Soil	VTAPAAPVSQSMPMDRAILWNPIKKEGAGRPSGRAPYPVFFQQEAVVALQDHLKASPEQAIFGFLIGSLFRDPE
Ga0308187_103331871	3300031114	Soil	VTRSEPKPQPMPMDRAILWNPPAAPGTTSPGGKSTSRSPYPIFFQQEAVIALQEHLKSSPTQAIFGFLIGDVYR
Ga0310902_110380761	3300032012	Soil	MSRKPDPQPQPMPLDRSILWNPLAPGVEKAEGPSRQPYPIFFQQEAVIALQEHVKGSPTQAIFGFLVGE
Ga0307472_1000069261	3300032205	Hardwood Forest Soil	VSPRPEPKSQPMPLERAILWNPPAGGGTTDPGKSSSRSPYPIFFQQEAVIALQEH

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102979

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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