NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F102992

Metagenome / Metatranscriptome Family F102992

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102992
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 46 residues
Representative Sequence VVPPIADAAYGREFQQRMMAYQFYPAHTRDGRNVTYVVTVPLRIGN
Number of Associated Samples 85
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.98 %
% of genes near scaffold ends (potentially truncated) 95.05 %
% of genes from short scaffolds (< 2000 bps) 88.12 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (51.485 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil
(30.693 % of family members)
Environment Ontology (ENVO) Unclassified
(63.366 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(70.297 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 16.22%    β-sheet: 2.70%    Coil/Unstructured: 81.08%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF03030H_PPase 94.06
PF00375SDF 1.98
PF01521Fe-S_biosyn 0.99
PF01618MotA_ExbB 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG3808Na+ or H+-translocating membrane pyrophosphataseEnergy production and conversion [C] 94.06
COG0316Fe-S cluster assembly iron-binding protein IscAPosttranslational modification, protein turnover, chaperones [O] 0.99
COG4841Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF familyFunction unknown [S] 0.99

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A51.49 %
All OrganismsrootAll Organisms48.51 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002562|JGI25382J37095_10273833All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300004463|Ga0063356_103576924Not Available669Open in IMG/M
3300005177|Ga0066690_10626505Not Available717Open in IMG/M
3300005177|Ga0066690_11018654Not Available519Open in IMG/M
3300005178|Ga0066688_10962260Not Available522Open in IMG/M
3300005181|Ga0066678_10048820All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum2402Open in IMG/M
3300005186|Ga0066676_11012066Not Available552Open in IMG/M
3300005445|Ga0070708_101793710Not Available569Open in IMG/M
3300005554|Ga0066661_10512816All Organisms → cellular organisms → Bacteria723Open in IMG/M
3300005557|Ga0066704_10202035All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum1344Open in IMG/M
3300005558|Ga0066698_10169630All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum1483Open in IMG/M
3300005566|Ga0066693_10271322Not Available674Open in IMG/M
3300005568|Ga0066703_10029372All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium2941Open in IMG/M
3300005576|Ga0066708_10080650All Organisms → cellular organisms → Bacteria1895Open in IMG/M
3300006791|Ga0066653_10230765Not Available942Open in IMG/M
3300006797|Ga0066659_11249292Not Available620Open in IMG/M
3300006954|Ga0079219_12110644Not Available540Open in IMG/M
3300009038|Ga0099829_11118522Not Available653Open in IMG/M
3300009090|Ga0099827_10752496Not Available843Open in IMG/M
3300010067|Ga0127432_141797Not Available501Open in IMG/M
3300010089|Ga0127454_1060006Not Available587Open in IMG/M
3300010097|Ga0127501_1088550Not Available546Open in IMG/M
3300010134|Ga0127484_1034760Not Available880Open in IMG/M
3300010304|Ga0134088_10202496All Organisms → cellular organisms → Bacteria950Open in IMG/M
3300010304|Ga0134088_10292701All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300010304|Ga0134088_10377201Not Available690Open in IMG/M
3300010321|Ga0134067_10014711All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum2283Open in IMG/M
3300010321|Ga0134067_10160227All Organisms → cellular organisms → Bacteria808Open in IMG/M
3300010323|Ga0134086_10074397All Organisms → cellular organisms → Bacteria1177Open in IMG/M
3300010323|Ga0134086_10427180Not Available537Open in IMG/M
3300010326|Ga0134065_10441253Not Available531Open in IMG/M
3300010329|Ga0134111_10133962All Organisms → cellular organisms → Bacteria972Open in IMG/M
3300010336|Ga0134071_10590694Not Available580Open in IMG/M
3300010337|Ga0134062_10525030Not Available599Open in IMG/M
3300010337|Ga0134062_10604875Not Available565Open in IMG/M
3300010401|Ga0134121_11115173Not Available783Open in IMG/M
3300010896|Ga0138111_1127821Not Available539Open in IMG/M
3300012096|Ga0137389_11230092Not Available641Open in IMG/M
3300012201|Ga0137365_10616495Not Available795Open in IMG/M
3300012205|Ga0137362_10691046Not Available877Open in IMG/M
3300012207|Ga0137381_10754083Not Available845Open in IMG/M
3300012209|Ga0137379_11313146Not Available629Open in IMG/M
3300012210|Ga0137378_10924765Not Available785Open in IMG/M
3300012354|Ga0137366_10401779All Organisms → cellular organisms → Bacteria997Open in IMG/M
3300012355|Ga0137369_10298445All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum1196Open in IMG/M
3300012384|Ga0134036_1183005Not Available583Open in IMG/M
3300012387|Ga0134030_1110304Not Available572Open in IMG/M
3300012397|Ga0134056_1073722All Organisms → cellular organisms → Bacteria1237Open in IMG/M
3300012683|Ga0137398_11131069All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes538Open in IMG/M
3300012922|Ga0137394_10001485All Organisms → cellular organisms → Bacteria17140Open in IMG/M
3300012924|Ga0137413_10893116Not Available689Open in IMG/M
3300012925|Ga0137419_10855912Not Available746Open in IMG/M
3300012930|Ga0137407_12140494All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes534Open in IMG/M
3300012972|Ga0134077_10516582Not Available531Open in IMG/M
3300012976|Ga0134076_10012871All Organisms → cellular organisms → Bacteria2878Open in IMG/M
3300012976|Ga0134076_10060462All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum1445Open in IMG/M
3300012976|Ga0134076_10382563Not Available624Open in IMG/M
3300014150|Ga0134081_10270431Not Available601Open in IMG/M
3300014150|Ga0134081_10370825All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300014154|Ga0134075_10332214Not Available665Open in IMG/M
3300015257|Ga0180067_1078030All Organisms → cellular organisms → Bacteria731Open in IMG/M
3300015358|Ga0134089_10190222Not Available822Open in IMG/M
3300015359|Ga0134085_10332231All Organisms → cellular organisms → Bacteria673Open in IMG/M
3300017656|Ga0134112_10145428All Organisms → cellular organisms → Bacteria910Open in IMG/M
3300017659|Ga0134083_10083076All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum1246Open in IMG/M
3300018431|Ga0066655_10302065All Organisms → cellular organisms → Bacteria1042Open in IMG/M
3300021046|Ga0215015_10510242All Organisms → cellular organisms → Bacteria5031Open in IMG/M
3300021086|Ga0179596_10448711Not Available652Open in IMG/M
3300024330|Ga0137417_1441133Not Available964Open in IMG/M
3300026296|Ga0209235_1212279Not Available642Open in IMG/M
3300026298|Ga0209236_1023810All Organisms → cellular organisms → Bacteria3376Open in IMG/M
3300026307|Ga0209469_1018245All Organisms → cellular organisms → Bacteria2499Open in IMG/M
3300026314|Ga0209268_1056519All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum1229Open in IMG/M
3300026315|Ga0209686_1003509All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis7153Open in IMG/M
3300026315|Ga0209686_1049024All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum1550Open in IMG/M
3300026317|Ga0209154_1041038Not Available2091Open in IMG/M
3300026320|Ga0209131_1163693All Organisms → cellular organisms → Bacteria1104Open in IMG/M
3300026328|Ga0209802_1014428All Organisms → cellular organisms → Bacteria4517Open in IMG/M
3300026329|Ga0209375_1194164All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300026523|Ga0209808_1101836All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum1211Open in IMG/M
3300026523|Ga0209808_1286581All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300026529|Ga0209806_1136962All Organisms → cellular organisms → Bacteria958Open in IMG/M
3300026537|Ga0209157_1100441All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum1375Open in IMG/M
3300026537|Ga0209157_1286729Not Available611Open in IMG/M
3300026537|Ga0209157_1310381Not Available575Open in IMG/M
3300026540|Ga0209376_1300401All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300026552|Ga0209577_10304467All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum1188Open in IMG/M
3300027273|Ga0209886_1085293Not Available510Open in IMG/M
3300027384|Ga0209854_1068706Not Available622Open in IMG/M
3300027633|Ga0208988_1078052Not Available831Open in IMG/M
3300027655|Ga0209388_1010233All Organisms → cellular organisms → Bacteria2513Open in IMG/M
3300027725|Ga0209178_1221180Not Available676Open in IMG/M
3300027748|Ga0209689_1182046All Organisms → cellular organisms → Bacteria949Open in IMG/M
3300027748|Ga0209689_1182047All Organisms → cellular organisms → Bacteria949Open in IMG/M
3300027846|Ga0209180_10461181Not Available715Open in IMG/M
3300031152|Ga0307501_10025973All Organisms → cellular organisms → Bacteria1157Open in IMG/M
3300031740|Ga0307468_101284815All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300031962|Ga0307479_10464920All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetobacterium → Candidatus Magnetobacterium bavaricum1249Open in IMG/M
3300032180|Ga0307471_100685881All Organisms → cellular organisms → Bacteria1188Open in IMG/M
3300032180|Ga0307471_101590179Not Available810Open in IMG/M
3300032180|Ga0307471_101601209Not Available807Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil30.69%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil27.72%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil18.81%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.95%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.95%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.98%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.98%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.98%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand1.98%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.99%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.99%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.99%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.99%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002562Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300010067Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_8_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010089Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010097Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_24_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010134Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010896Grasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012384Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012387Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012397Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300015257Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_10DEnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015359Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015EnvironmentalOpen in IMG/M
3300017656Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015EnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026307Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)EnvironmentalOpen in IMG/M
3300026314Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)EnvironmentalOpen in IMG/M
3300026315Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)EnvironmentalOpen in IMG/M
3300026523Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)EnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300026537Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)EnvironmentalOpen in IMG/M
3300026540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027273Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50 (SPAdes)EnvironmentalOpen in IMG/M
3300027384Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)EnvironmentalOpen in IMG/M
3300027633Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027725Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300031152Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_SEnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25382J37095_1027383323300002562Grasslands SoilEPPIADAAYSREFQRRMLAYQFYPARTRDGRNVASVVTVPLRFGN*
Ga0063356_10357692423300004463Arabidopsis Thaliana RhizosphereTRVEVDPPIHDDAYRREFLEFMMAYQFYPAKTRAGVNVASIVTVPMRIGKPADR*
Ga0066690_1062650523300005177SoilVAVDPPIADAAYNREFQRRMMAYQFYPAHTRGGRTLEDVVTVPLRIGN*
Ga0066690_1101865413300005177SoilRVEIDPPIADAAYSREFQQRMMAYQFYPARTRDGGNVASVVLVPLRIGN*
Ga0066688_1096226023300005178SoilTRVEIDPPIADAAYSREFQQRMMAYQFYPARTRDGGNVASVVLVPLRIGN*
Ga0066678_1004882023300005181SoilAAYSREFQRRMLAYQFYPARTRDGRNVASVVTVPLRFGN*
Ga0066676_1101206613300005186SoilVEVDPPIRDEAYRQELVQRMMAYQFYPARARDGVTVASVFTFSMRIGN*
Ga0070708_10179371023300005445Corn, Switchgrass And Miscanthus RhizosphereAAYGREFQQRMLAYQFYPAHTRDGRNVTYVVTVPLRIGN*
Ga0066661_1051281613300005554SoilEFQRRMLAYQFYPARTRDGRNVASVVTVPLRIGN*
Ga0066704_1020203513300005557SoilRREFVERMMAYQFYPARTRDGMNMASVVTVSLRIGT*
Ga0066698_1016963023300005558SoilADGRVTRVAVDPPIADAAYNREFQRRMMAYQFYPAHTRGGRTLEDVVIVPLRIGN*
Ga0066693_1027132213300005566SoilPIADAAYNREFQRRMMAYQFYPAHTRGGRTLEDVVIVPLRIGN*
Ga0066703_1002937233300005568SoilVDPPIADAAYNREFQRRMMAYQFYPAHTRGGRTLADVVIVPLRIGN*
Ga0066708_1008065023300005576SoilDAAYNREFQRRMMAYQFYPAHTRGGRTLEDVVTVPLRIGN*
Ga0066653_1023076513300006791SoilREFQQRMMAYQFYPAHTRDGQSVAGVVTISVRIGH*
Ga0066659_1124929213300006797SoilREFQRRMLAYQFYPARTRDGRNVASVVTVPLRIGN*
Ga0079219_1211064423300006954Agricultural SoilVEPPIADPEYGREFQRHMMAYRFYPAHTRDGRNVAYVATIPLRIGN*
Ga0099829_1111852213300009038Vadose Zone SoilEFQQRMMAYQFYPAHTRDGRSVANVVTIPIRIGH*
Ga0099827_1075249623300009090Vadose Zone SoilADADYSREFQQRMMAYRFYPARTRDGRSVASVVTVPLRIGN*
Ga0127432_14179723300010067Grasslands SoilRVTRVDVVPPIADATYGREFQQRMMAYVFYPAHTRDGRNVTYVVTVPLRIGN*
Ga0127454_106000613300010089Grasslands SoilDGRVTRVEIDPPIADAAYSREFQQRMMAYQFYPAHTRDGRNVTYVVTVPLRIGN*
Ga0127501_108855023300010097Grasslands SoilVEGRVTRVDIDPPIADAAYGREFQQRMMAYQFYPAHTRDGRSVANVVTIPIRIGY*
Ga0127484_103476023300010134Grasslands SoilRVTRVEVDPPIAEAEYGREFQQRMMAYQFYPAHTRDGRSVANVVTIPILIGY*
Ga0134088_1020249613300010304Grasslands SoilPPIAHAAYSREFQRRMLAYQFYPARTRDGRNVASVVTVPLRFGN*
Ga0134088_1029270123300010304Grasslands SoilEPPIAEAAYSREFQRRMLAYQFYPARTRDGRNVASVVTVPLRIGN*
Ga0134088_1037720123300010304Grasslands SoilADAGYSREFQQRMLAYQFYPARTRDGRNVASVVTVPLRIGN*
Ga0134067_1001471123300010321Grasslands SoilVDPPIADAAYGREFQQRMMAYRFYPAHTRDGRSVANVVTIPIRIGH*
Ga0134067_1016022733300010321Grasslands SoilVDPPIADAAYGREFQQRMMAYQFYPAHTRAGRNVTCVVTVPLRIGN*
Ga0134086_1007439723300010323Grasslands SoilQIADGAYSREFQQRMMAYQFYPAHTRDGQSVAGVVTISVRIGH*
Ga0134086_1042718023300010323Grasslands SoilYGREFQQRMMAYQFYPAHTRDGRNVTYVVTVSLRIGN*
Ga0134065_1044125323300010326Grasslands SoilAADGRVTRVEVDPPIADAAYNREFQRRMMAYQFYPAHTRGGRTLADVVIVPLRIGN*
Ga0134111_1013396223300010329Grasslands SoilVTRIEVDPPIPDADYGREFRQRMMVYQFYPARTRDGRSVASVVTVPVRIGN*
Ga0134071_1059069423300010336Grasslands SoilTRVEVDPPIVDGTYSREFQQRMMAYQFYPAHTRDGRNVAAAVTISVRIGH*
Ga0134062_1052503013300010337Grasslands SoilIDPPIADAAYSREFQQRMMAYQFYPARTRDGRNLASVVLVPLRIGN*
Ga0134062_1060487513300010337Grasslands SoilDGRVTRVEIDPPIADAAYSREFQQRMMAYQFYPARTRDGGNVASVVLVPLRIGN*
Ga0134121_1111517323300010401Terrestrial SoilPPIADAAYGREFQQRMLAYQFYPAHTRDGRNVSCVVTVPLRIGN*
Ga0138111_112782123300010896Grasslands SoilVTRVEIDPPIADAAYSREFQQRMMAYQFYPAHTRDGRSVANVVTIPIRIGY*
Ga0137389_1123009223300012096Vadose Zone SoilRVTRVDVVPPIADAAYGREFQQRMMAYQFYPAHTRDGRSVANVVTIPIRIGH*
Ga0137365_1061649513300012201Vadose Zone SoilPPIADAAYGREFQQRMMAYQFYPAHTRDGRNVTYVVLVPLRIGN*
Ga0137362_1069104613300012205Vadose Zone SoilDAAYGREFQQRMMAYQFYPARTRDGRNVSYVVMVPLRIGN*
Ga0137381_1075408313300012207Vadose Zone SoilDPPIADAAYGREFQQRMMAYQFYPAHTRDGRNVTYVVTVSLRIGN*
Ga0137379_1131314613300012209Vadose Zone SoilIRDDAYRREFVERMLAYQFYPARTRDGANVASVVTIPLRIGN*
Ga0137378_1092476523300012210Vadose Zone SoilIDPPIADAGYSREFQQRMMAYQFYPARTRDGRNMASVVLVPLRIGN*
Ga0137366_1040177923300012354Vadose Zone SoilVTQVEVDPPIADAAYGREFQEHMMAYRFYPAHTRDGRNVAYVATIPLRIGN*
Ga0137369_1029844523300012355Vadose Zone SoilGREFQQRMMAYQFYPAHTRDGRNVTYVVTVPLRIGN*
Ga0134036_118300513300012384Grasslands SoilRVTRVDVDPPIADAAYGREFQQRMMAYRFYPAHTRDGRSVANVVTIPIRIGH*
Ga0134030_111030423300012387Grasslands SoilWLSVEGRVTRVDIDPPIADAAYGREFQQRMMAYQFYPAHTRDGRSVANVVTIPIRIGY*
Ga0134056_107372223300012397Grasslands SoilVEGRVTRVDVVPPIADAAYGREFQQRMMAYQFYPAHTRDGRNVTYVVTVSLRIGN*
Ga0137398_1113106923300012683Vadose Zone SoilVKFWVSVEGRVTRVDVVPPIADAVYGREFQQRMMAYQFYPAHTRDGRNVTYVVTVPLRIGN*
Ga0137394_10001485153300012922Vadose Zone SoilYGREFQQRMMAYQFYPAHTRDGRNVTYVVTVPLRIGN*
Ga0137413_1089311623300012924Vadose Zone SoilGAYGREFQQRMMAYQFYPARTRDGRNVSYVVMVPLRIGN*
Ga0137419_1085591223300012925Vadose Zone SoilRVDVVPPIADAAYGREFQQRMMAYQFYPAHTRDGRNVTCVVTVPLRIGN*
Ga0137407_1214049413300012930Vadose Zone SoilMFWVSVEGRVTRVDVVPPIADAAYGREFQQRMMAYQFYPAHTRDGRNVTYVVTVPLRIGN
Ga0134077_1051658213300012972Grasslands SoilYSREFQQRMMAYQFYPARTRDGRNVASIVPVPLRIGH*
Ga0134076_1001287133300012976Grasslands SoilPIAEAAYSREFQRRMLAYQFYPARTRDGRNVASVVTVPLRIGN*
Ga0134076_1006046213300012976Grasslands SoilIEVDPPIPDADYGREFQQRMMAYQFYPARTRDGRSVASVVTVPVRIGN*
Ga0134076_1038256323300012976Grasslands SoilDAAYGREFQQRMMAYQFYPAHTRAGRNVTCVVTVPLRIGN*
Ga0134081_1027043123300014150Grasslands SoilEFQRRMMAYQFYPAHTRGGRTLEDVVIVPLRIGN*
Ga0134081_1037082513300014150Grasslands SoilPDADYGREFRQRMMAYQFYPARTRDGRSVASVVTVPVRIGN*
Ga0134075_1033221413300014154Grasslands SoilDAAYSREFQQRMMAYQFYPARTRDGRNVASIVPVPLRIGH*
Ga0180067_107803023300015257SoilRREFLERMRAYQFVPAQTRDKRNVASVVTVTLRIGQ*
Ga0134089_1019022213300015358Grasslands SoilVVPPIADAAYGREFQQRMMAYQFYPAHTRDGRNVTYVVTVPLRIGN*
Ga0134085_1033223113300015359Grasslands SoilREFQRRMLAYQFYPARTRDGRNVASVVTVPLRFGN*
Ga0134112_1014542813300017656Grasslands SoilTRVEIDPSIADASYSREFQERMMAYQFYPARTRDGRSVASVVTVPVRIGN
Ga0134083_1008307623300017659Grasslands SoilYGREFQQRMMAYQFYPAHTRDGRNVTYVVTVPLRIGN
Ga0066655_1030206523300018431Grasslands SoilADAAYGREFQQRMMAYRFYPAHTRDGRSVANVVTIPIRIGY
Ga0215015_1051024243300021046SoilMCIRDSWVTDEGRVARVELDPPIPDAAYGREFQQRMMAYLFYPAHTRDGRMMADVVTIPVRFSN
Ga0179596_1044871123300021086Vadose Zone SoilAEYGREFQQRMMAYQFYPAHTRDGRSVANVVTIPIRIGH
Ga0137417_144113323300024330Vadose Zone SoilRVKFWVSAEGRVTRVDVEPPIADAGYGREFQQRMMAYQFYPAHTRDGRNVSYVVMVPLRIGN
Ga0209235_121227923300026296Grasslands SoilRVTRVEIDPPIADAGYSREFQQRMMAYQFYPARTRDGRNMASVVLVPLRIGN
Ga0209236_102381033300026298Grasslands SoilSIEGRVTRVDVVPPIADAAYGREFQQRMLAYQFYPAHTRDGRNVTYVVTVPLRIGN
Ga0209469_101824533300026307SoilHVKFWVSVEGRVTRVDVEPPIADAAYGREFLQRMMAYQFYPAHTRDGRNVTYVVTVPLRIGT
Ga0209268_105651923300026314SoilEVDPPIPDADYGREFRQRMMAYQFYPARTRDGRSVASVVTVPVRIGN
Ga0209686_100350933300026315SoilVAVDPPIADAAYNRELQRRMMAYQFYPAHTRGGRTLEDVVIVPLRIGN
Ga0209686_104902423300026315SoilNREFQRRMMAYQFYPAHTRGGRTLADVVIVPLRIGN
Ga0209154_104103813300026317SoilTRVEVDPPIADAAYNREFERRMMAYQFYPAHTRGGRTLADVVTVPLRIGN
Ga0209131_116369313300026320Grasslands SoilRVDVVPPIADAAYGREFQQRMMAYQFYPAHTRDGRNVTYVVTVPLRIGN
Ga0209802_101442813300026328SoilDGRVTRVEVDPPIADAAYNREFQRRMMAYQFYPAHTRGGRTLADVVIVPLRIGN
Ga0209375_119416413300026329SoilTRIEVDPPIPDADYGREFRQRMMAYQFYPARTRDGRSVASVVTVPVRIGN
Ga0209808_110183613300026523SoilPPITDAAYSREFQQRMMAYQFYPARTRDGRNVASVVPVPLRIGN
Ga0209808_128658123300026523SoilVDPPIPDADYGREFRQRMMAYQFYPARTRDGRNMASVVTVPVRIGN
Ga0209806_113696213300026529SoilAAYRREFQRRMLAYQFYPARTRDGRNVASVVTVPLRIGN
Ga0209157_110044123300026537SoilDAAYGREFQQRMMAYQFYPAHTRAGRNVTCVVTVPLRIGN
Ga0209157_128672913300026537SoilREFQQRMMAYQFYPAHTRDGRNVASIVTVPLRIGN
Ga0209157_131038113300026537SoilVEGRVTRVDIDPPIADAAYGREFQQRMMAYQFYPAHTRDGRNVTYVVTVSLRIGN
Ga0209376_130040113300026540SoilDYGREFRQRMMAYQFYPAHTRDGRSVASVVTVPVRIGN
Ga0209577_1030446713300026552SoilTRVDVDPPIADAAYNREFQRRMMAYQFYPAHTRGGRTVADVVTVPLRIGN
Ga0209886_108529313300027273Groundwater SandEGRVTRVDVVPPIADAAYGREFQQRMMAYQFYPAHTRDGRNVTYVVTVPLRIGN
Ga0209854_106870613300027384Groundwater SandRVTRVEVDPPIAEARYSREFQQRMMAYQFYPAHTRDGRNVTYVVTVPLRIGN
Ga0208988_107805213300027633Forest SoilTRVDVEPPMADAAYGREFQQRMMAYQFYPAHTRDGRNVTYVVTVPLRIGN
Ga0209388_101023333300027655Vadose Zone SoilFWVSIEGRVTRVDVVPPIADAAYGREFQQRMMAYQFYPAHTQDGRNVTYVVTVPLRIGN
Ga0209178_122118013300027725Agricultural SoilAADGRVTRVAVDPPITDGAYDREFQRRMMAYQFYPAHTRAGQNIADVVTVPLRIGN
Ga0209689_118204613300027748SoilSREFQRRMLAYQFYPARTRDGRNVASVVTVPLRFGN
Ga0209689_118204713300027748SoilSREFQRRMLAYQFYPARTRDGRNVASVVTVPLRIGN
Ga0209180_1046118123300027846Vadose Zone SoilPIADAEYGREFQRRMMAYQFYPAHTRDGRSVANVVTIPIRIGH
Ga0307501_1002597313300031152SoilTYRVKFWVSVDGRVTRVDVEPPIADAAYSREFQQRMMAYQFYPAHMRDGRNVTYVVTVPLRIGN
Ga0307468_10128481523300031740Hardwood Forest SoilDPPIADEAYRREFLERMQAYQFVPAQTRDRRNVASVVTVTLRIGH
Ga0307479_1046492023300031962Hardwood Forest SoilIADAAYNREFQRRMMAYQFYPAHTRGGRTLADVVIVPLRIGN
Ga0307471_10068588113300032180Hardwood Forest SoilGRVTRVDVVPPIADAAYGREFQQRMLAYQFYPAHTRDGRNVTYVVTVPLRIGN
Ga0307471_10159017923300032180Hardwood Forest SoilTLVEVDPPIADAAYGREFQQRMMAYQFYPAHTRDGRNVTYVVTVPLRIGN
Ga0307471_10160120923300032180Hardwood Forest SoilRRDLLERMLAYQFHPARTRSGTPVASVVTVPLRIGN

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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