Metagenome Family F103018

Basic Information
Family ID	F103018
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	110 residues
Representative Sequence	MDRIEAAREAVLQWSRSVLALRGRSLEGPLADGALPCDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQVQLT
Number of Associated Samples	89
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.16 %
% of genes near scaffold ends (potentially truncated)	42.57 %
% of genes from short scaffolds (< 2000 bps)	82.18 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (51.485 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.832 % of family members)
Environment Ontology (ENVO)	Unclassified (42.574 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (62.376 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.67% β-sheet: 35.09% Coil/Unstructured: 48.25%
Feature Viewer

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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF13432	TPR_16	7.92
PF13188	PAS_8	4.95
PF02492	cobW	1.98
PF00989	PAS	1.98
PF13426	PAS_9	1.98
PF01261	AP_endonuc_2	1.98
PF05035	DGOK	1.98
PF00550	PP-binding	0.99
PF00072	Response_reg	0.99
PF08448	PAS_4	0.99
PF07690	MFS_1	0.99
PF02698	DUF218	0.99
PF07005	SBD_N	0.99
PF00691	OmpA	0.99
PF17042	NBD_C	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG3734	2-keto-3-deoxy-galactonokinase	Carbohydrate transport and metabolism [G]	1.98
COG1434	Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family	Cell wall/membrane/envelope biogenesis [M]	0.99
COG2949	Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin	Cell wall/membrane/envelope biogenesis [M]	0.99
COG3395	D-threonate/D-erythronate kinase OtnK and related C4-acid sugar kinases, YgbK/DUF1537 family	Carbohydrate transport and metabolism [G]	0.99

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
All Organisms	root	All Organisms	48.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
cellular organisms	root	All Organisms → cellular organisms	48.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	33.66 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	29.70 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.99 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3.96 %
Sedimenticola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola	0.99 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
unclassified Sedimenticola	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → unclassified Sedimenticola	0.99 %
Delftia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Delftia	0.99 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
unclassified Delftia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Delftia → unclassified Delftia	0.99 %
Sedimenticola sp. SB48	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → unclassified Sedimenticola → Sedimenticola sp. SB48	0.99 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.49 %
Delftia sp. 670	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Delftia → unclassified Delftia → Delftia sp. 670	0.99 %
Sedimenticola sp. SB48	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → unclassified Sedimenticola → Sedimenticola sp. SB48	0.99 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459018\|G1P06HT01BXZUR	Not Available	601	Open in IMG/M
2199352024\|deeps_contig52839.32819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1843	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105637322	Not Available	1301	Open in IMG/M
3300005327\|Ga0070658_10833132	Not Available	802	Open in IMG/M
3300005328\|Ga0070676_10005058	All Organisms → cellular organisms → Bacteria → Proteobacteria	6991	Open in IMG/M
3300005329\|Ga0070683_100653790	Not Available	1006	Open in IMG/M
3300005330\|Ga0070690_100130478	All Organisms → cellular organisms → Bacteria	1697	Open in IMG/M
3300005330\|Ga0070690_101492687	Not Available	546	Open in IMG/M
3300005331\|Ga0070670_101132508	Not Available	714	Open in IMG/M
3300005335\|Ga0070666_10162555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1561	Open in IMG/M
3300005336\|Ga0070680_100053294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3301	Open in IMG/M
3300005337\|Ga0070682_100219061	All Organisms → cellular organisms → Bacteria → Proteobacteria	1353	Open in IMG/M
3300005339\|Ga0070660_100017739	All Organisms → cellular organisms → Bacteria → Proteobacteria	5191	Open in IMG/M
3300005339\|Ga0070660_100401695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1133	Open in IMG/M
3300005344\|Ga0070661_100139931	Not Available	1823	Open in IMG/M
3300005355\|Ga0070671_100039450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3920	Open in IMG/M
3300005440\|Ga0070705_100089996	Not Available	1909	Open in IMG/M
3300005535\|Ga0070684_100497944	Not Available	1128	Open in IMG/M
3300005535\|Ga0070684_101738338	Not Available	588	Open in IMG/M
3300005544\|Ga0070686_100841575	Not Available	742	Open in IMG/M
3300005545\|Ga0070695_101509603	Not Available	559	Open in IMG/M
3300005547\|Ga0070693_100143908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1504	Open in IMG/M
3300005578\|Ga0068854_100200199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1569	Open in IMG/M
3300005614\|Ga0068856_100180184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2126	Open in IMG/M
3300005614\|Ga0068856_101507711	All Organisms → cellular organisms → Bacteria → Proteobacteria	686	Open in IMG/M
3300005617\|Ga0068859_101053749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	894	Open in IMG/M
3300006755\|Ga0079222_11794333	Not Available	593	Open in IMG/M
3300009174\|Ga0105241_10850130	Not Available	844	Open in IMG/M
3300010398\|Ga0126383_10712670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1082	Open in IMG/M
3300010400\|Ga0134122_10158198	Not Available	1848	Open in IMG/M
3300010403\|Ga0134123_12898416	Not Available	548	Open in IMG/M
3300012507\|Ga0157342_1079708	Not Available	513	Open in IMG/M
3300012508\|Ga0157315_1077830	Not Available	500	Open in IMG/M
3300012511\|Ga0157332_1013302	Not Available	863	Open in IMG/M
3300013102\|Ga0157371_10424105	Not Available	975	Open in IMG/M
3300013104\|Ga0157370_10923927	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300013105\|Ga0157369_11617112	Not Available	659	Open in IMG/M
3300013306\|Ga0163162_10378666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1548	Open in IMG/M
3300013308\|Ga0157375_10299752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1771	Open in IMG/M
3300014325\|Ga0163163_10655439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1113	Open in IMG/M
3300014969\|Ga0157376_11367133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Delftia → unclassified Delftia → Delftia sp. 670	739	Open in IMG/M
3300015371\|Ga0132258_10474995	Not Available	3121	Open in IMG/M
3300015372\|Ga0132256_102734281	Not Available	593	Open in IMG/M
3300015374\|Ga0132255_101613443	Not Available	983	Open in IMG/M
3300016294\|Ga0182041_10410813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1154	Open in IMG/M
3300018920\|Ga0190273_10604699	Not Available	829	Open in IMG/M
3300021445\|Ga0182009_10016419	All Organisms → cellular organisms → Bacteria → Proteobacteria	2712	Open in IMG/M
3300021445\|Ga0182009_10018776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2577	Open in IMG/M
3300021445\|Ga0182009_10362461	Not Available	742	Open in IMG/M
3300025315\|Ga0207697_10067419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1496	Open in IMG/M
3300025912\|Ga0207707_11233521	Not Available	604	Open in IMG/M
3300025913\|Ga0207695_10534379	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300025917\|Ga0207660_10059292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2747	Open in IMG/M
3300025918\|Ga0207662_10544120	Not Available	803	Open in IMG/M
3300025919\|Ga0207657_10027728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	5181	Open in IMG/M
3300025919\|Ga0207657_10334295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1196	Open in IMG/M
3300025919\|Ga0207657_10787334	Not Available	736	Open in IMG/M
3300025925\|Ga0207650_10604078	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300025931\|Ga0207644_10025171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	4091	Open in IMG/M
3300025932\|Ga0207690_10050333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2781	Open in IMG/M
3300025932\|Ga0207690_10335504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1192	Open in IMG/M
3300025940\|Ga0207691_10557683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	971	Open in IMG/M
3300025944\|Ga0207661_10020452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4948	Open in IMG/M
3300025945\|Ga0207679_11381510	Not Available	646	Open in IMG/M
3300025986\|Ga0207658_10041527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3331	Open in IMG/M
3300026078\|Ga0207702_10383980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1351	Open in IMG/M
3300026088\|Ga0207641_11480020	Not Available	680	Open in IMG/M
3300026089\|Ga0207648_10816591	Not Available	869	Open in IMG/M
3300026095\|Ga0207676_11472564	Not Available	677	Open in IMG/M
3300026116\|Ga0207674_10069678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → unclassified Sedimenticola → Sedimenticola sp. SB48	3537	Open in IMG/M
3300028380\|Ga0268265_10268246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1521	Open in IMG/M
3300028592\|Ga0247822_11903273	Not Available	509	Open in IMG/M
3300031231\|Ga0170824_111357879	Not Available	618	Open in IMG/M
3300031543\|Ga0318516_10649124	Not Available	601	Open in IMG/M
3300031564\|Ga0318573_10103827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1462	Open in IMG/M
3300031640\|Ga0318555_10595071	Not Available	599	Open in IMG/M
3300031680\|Ga0318574_10140520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1366	Open in IMG/M
3300031681\|Ga0318572_10362681	Not Available	860	Open in IMG/M
3300031731\|Ga0307405_10325809	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300031747\|Ga0318502_10499614	Not Available	729	Open in IMG/M
3300031781\|Ga0318547_10085024	Not Available	1780	Open in IMG/M
3300031799\|Ga0318565_10593120	Not Available	533	Open in IMG/M
3300031819\|Ga0318568_10997510	Not Available	517	Open in IMG/M
3300031821\|Ga0318567_10150962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1285	Open in IMG/M
3300031831\|Ga0318564_10311608	Not Available	694	Open in IMG/M
3300031845\|Ga0318511_10399176	Not Available	630	Open in IMG/M
3300031860\|Ga0318495_10244408	Not Available	804	Open in IMG/M
3300031879\|Ga0306919_11215146	Not Available	572	Open in IMG/M
3300031896\|Ga0318551_10042422	Not Available	2263	Open in IMG/M
3300031897\|Ga0318520_10251622	Not Available	1055	Open in IMG/M
3300031938\|Ga0308175_100422168	All Organisms → cellular organisms → Bacteria	1399	Open in IMG/M
3300031938\|Ga0308175_102079878	Not Available	637	Open in IMG/M
3300031996\|Ga0308176_10079757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2804	Open in IMG/M
3300031996\|Ga0308176_10393539	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300031996\|Ga0308176_10444805	All Organisms → cellular organisms → Bacteria → Proteobacteria	1304	Open in IMG/M
3300032001\|Ga0306922_10314559	Not Available	1681	Open in IMG/M
3300032043\|Ga0318556_10214348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1003	Open in IMG/M
3300032044\|Ga0318558_10107153	Not Available	1314	Open in IMG/M
3300032126\|Ga0307415_100005169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6889	Open in IMG/M
3300032261\|Ga0306920_101109520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1147	Open in IMG/M
3300034820\|Ga0373959_0054533	Not Available	871	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.47%
Host-Associated	Host-Associated	45.54%
Engineered	Engineered	0.99%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.47%
Plants	Host-Associated → Plants	45.54%
Solid Waste	Engineered → Solid Waste	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.47%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.84%
Roots	Host-Associated → Plants → Roots	0.99%
Grass	Engineered → Solid Waste → Grass	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	19.80%
Loam	Environmental → Terrestrial → Soil → Loam	14.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%
Composting	Engineered → Solid Waste → Grass → Composting	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	19.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	9.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.99%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.99%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459018	Litter degradation MG2	Engineered	Open in IMG/M
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012511	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2MG_02702040	2170459018	Switchgrass, Maize And Mischanthus Litter	MGRIEAARVAVLQWSRSVLALRGRSLDGPLPADASAEDGDLFATDNGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAQLVPVAAASPCVCASIEFEPRIEADFAWAVPGPRQMQ
deeps_00216830	2199352024	Soil	MGRIEAARAAVLQWSRSVLALRGRSIEGPLAGGLPSDDDPDTIIEDTGLVMTPAQTAGFFARSASWRCTGCGKVHEFSHVVPVVEASPCTCASIEFEPRLEVDFSWGTPLRPMQLMT
INPhiseqgaiiFebDRAFT_1056373223	3300000364	Soil	MGRIESAREAVLQWSRXVLXLRGRSIEGPLPDGAPLPDDAFTGETGLVMTPAQTAGFFARSSSWRCTGCGKVHVFSQVVPXVAASPCVCASIEFEPRLEPDFSWGTSQRQVQLT*
Ga0070658_108331321	3300005327	Corn Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPGAESAADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT*
Ga0070676_100050586	3300005328	Miscanthus Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT*
Ga0070683_1006537901	3300005329	Corn Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRALEGPLVEGPPPEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT*
Ga0070690_1001304782	3300005330	Switchgrass Rhizosphere	MGRIEAAREAVLQWSRSVLALRGRSLDGPPPDASALPEDSFAETGLVMTPAQTAGFFARSSRWRCTGCGKVHVFSHVVPVVAASPCACASIEFEPRLEPDFSWGTGPRQIQLT*
Ga0070690_1014926872	3300005330	Switchgrass Rhizosphere	RGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT*
Ga0070670_1011325082	3300005331	Switchgrass Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPGAESAADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEAGFSWGQTQRH
Ga0070666_101625551	3300005335	Switchgrass Rhizosphere	MGRIEAAREAVLQWSRSVLALRGRSLDGPPPDASALPEDGFAETGLVMTPAQTAGFFARSSRWRCTGCGKVHVFSHVVPVVAASPCACASIEFEPRLEPDFSWGTGPRQIQLT*
Ga0070680_1000532943	3300005336	Corn Rhizosphere	MGRIEAARTAVLQWSRAVLALRGRSIEGPLPADAAAAEDADVFAGDNGLVMTPAQTAGFFARSSSWRCTGCGKVHVLAQLVPVAAASPCTCASIEFEPRIEADFSWAAPSPRSMQLMA*
Ga0070682_1002190612	3300005337	Corn Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT*
Ga0070660_1000177393	3300005339	Corn Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVDGPPPEDGAAGEIGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT*
Ga0070660_1004016952	3300005339	Corn Rhizosphere	MGRIEAARTAVLQWSRAVLALRGRSIEGPLPADAAAAEDADVFAGDNGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAQLVPVAAASPCTCASIEFEPRIEADFSWAAPSPRSMQLMA*
Ga0070661_1001399311	3300005344	Corn Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPGAESAADDTASGEISLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT*
Ga0070671_1000394503	3300005355	Switchgrass Rhizosphere	MGRIESAREAVLQWSRAVLALRGRSLEGPFASDSPDGIDAIIGDTGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVSVAAASPCVCASIEFEPRVEVDFSWGTSQRPVQLMT*
Ga0070705_1000899961	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEAD
Ga0070684_1004979442	3300005535	Corn Rhizosphere	MDRIEAAREAVLQWSRSVLSLRGRSLEGPLVEGPPPDDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT*
Ga0070684_1017383381	3300005535	Corn Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRALEGPLVEGPPPDDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT*
Ga0070686_1008415751	3300005544	Switchgrass Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQ
Ga0070695_1015096032	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	SVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT*
Ga0070693_1001439082	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQVQLT*
Ga0068854_1002001991	3300005578	Corn Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPGAESAADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADF
Ga0068856_1001801843	3300005614	Corn Rhizosphere	MGRIEAARAAVLQWSRSVLALRGRSLDGPLPADASADDGDLFASDNGLVMTPAQTAGFFARSSSWRCTGCGKVHVFSQLVPVAAASPCVCASIEFEPRIEADFAWAVSGPRQMQLMA*
Ga0068856_1015077111	3300005614	Corn Rhizosphere	MGRIESAREAVLQWSRAVLALRGRSLEGPFASDSPDGIDAIIGDTGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVSVAAASPCVCASIEFE
Ga0068859_1010537491	3300005617	Switchgrass Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEF
Ga0079222_117943331	3300006755	Agricultural Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLPDASVQSEDAAPGETGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGATQRQIQLT*
Ga0105241_108501302	3300009174	Corn Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWG
Ga0126383_107126701	3300010398	Tropical Forest Soil	AIVRDSEDHMDRIEAAREAVLQWSRSVLALRGRSLEGPLADGALPLDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT*
Ga0134122_101581981	3300010400	Terrestrial Soil	MNRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPAPADDAVSAETGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQVQLT*
Ga0134123_128984162	3300010403	Terrestrial Soil	MGRIEAAREAVLQWSRSVLALRGRSLDGPPPDASSLPEDSFAETGLVMTPAQTAGFFARSSRWRCTGCGKVHVFSHVVPVVAASPCACASIEFEPRLEPDFSWGTGPRQIQLT*
Ga0157342_10797081	3300012507	Arabidopsis Rhizosphere	MGRIESAHAAVLQWCRTVLALRGRALDGPLQADAPPSDEADTIFDVTGLVMTPAQPAGFFARSSSWRCTGCGKVHMFSHVVPFVAASPCTCASIEFE
Ga0157315_10778301	3300012508	Arabidopsis Rhizosphere	MGRIEAAREAVLQWSRSVLALRGRSLDGPPPAASALPEDGFAETGLVMTPAQTAGFFARSSRWRCTGCGKVHVFSHVVPVVAASPCACASIEFEPRLEPDFSWGTGPRQIQLT*
Ga0157332_10133021	3300012511	Soil	MGRIEAAREAVLQWSRSVLALRGRSIDGPLPDASAMPEDGFAETGLVMTPAQTAGFFARSSRWRCTGCGKVHVFSHVVPVVAASPCACASIEFEPRLEPDFSWGTGPRQIQLT*
Ga0157371_104241052	3300013102	Corn Rhizosphere	MGRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT*
Ga0157370_109239271	3300013104	Corn Rhizosphere	RSRRNRYRRGSEGSAMDRIEAAREAVLQWSRSVLALRGRSLEGPGAESAADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT*
Ga0157369_116171121	3300013105	Corn Rhizosphere	MGRIEAARAAVLQWSRSVLALRGRSLDGPLPADASADEGDLFASDNGLVMTPAQTAGFFARSSSWRCTGCGKVHVFSQLVPVAAASPCVCASIEFEPRIEADFAWAVSGPRQMQLMA*
Ga0163162_103786664	3300013306	Switchgrass Rhizosphere	EAAREAVLQWSRSVLALRGRSLDGPPPDASALPEDSFAETGLVMTPAQTAGFFARSSRWRCTGCGKVHVFSHVVPVVAASPCACASIEFEPRLEPDFSWGTGPRQIQLT*
Ga0157375_102997523	3300013308	Miscanthus Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVAAASPCVCASIEFEPRLEADFSWGQTQRQIQLT*
Ga0163163_106554391	3300014325	Switchgrass Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFE
Ga0157376_113671332	3300014969	Miscanthus Rhizosphere	MGRIESAREAVLQWSRAVLALRGRSLEGPFASDSPDGIDAIIGDTGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVSVAAASPCVCASIEFEPRVEV
Ga0132258_104749952	3300015371	Arabidopsis Rhizosphere	MNRIEAAREAVLQWSRSVLALRGRSLEGPLVEGSAPADDAVSAETGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQVQLT*
Ga0132256_1027342811	3300015372	Arabidopsis Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLEVPPPLEDSAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQVQLT*
Ga0132255_1016134431	3300015374	Arabidopsis Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLEVPPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT*
Ga0182041_104108132	3300016294	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLAEGGLPSDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEPDFSWGQTQRQIQLT
Ga0190273_106046991	3300018920	Soil	VLSQRGRSIEGPGSESSPPSDEIDTVFGDTGLVMTPAQSAGFFARSASWRCTGCGKLHVFTQVVPVAAASPCTCASIEFEPRLETDLSWGNGQRRLQLMT
Ga0182009_100164194	3300021445	Soil	MDRIEAARAAVLQWSRSVLALRGRSIEGPLAGGLPGDDDVDTIIEDTGLVMTPAQTAGFFARSASWRCTGCGKVHEFSHVVPVAAASPCTCASIEFEPRVGVDFSWGTPPRQMQLMT
Ga0182009_100187764	3300021445	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPGAESAADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT
Ga0182009_103624612	3300021445	Soil	MERIEAAREAVLQWSRSVLALRARSIEGPLAESQSLADEAFSGETGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEPDFSWGAGQRQVQLA
Ga0207697_100674192	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT
Ga0207707_112335211	3300025912	Corn Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPGAESAADDTASGEISLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT
Ga0207695_105343791	3300025913	Corn Rhizosphere	AREAVLQWSRSVLALRGRSLEGPGAESAADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT
Ga0207660_100592922	3300025917	Corn Rhizosphere	MGRIEAARTAVLQWSRAVLALRGRSIEGPLPADAAAAEDADVFAGDNGLVMTPAQTAGFFARSSSWRCTGCGKVHVLAQLVPVAAASPCTCASIEFEPRIEADFSWAAPSPRSMQLMA
Ga0207662_105441202	3300025918	Switchgrass Rhizosphere	MGRIEAAREAVLQWSRSVLALRGRSLDGPPPDASALPEDSFAETGLVMTPAQTAGFFARSSRWRCTGCGKVHVFSHVVPVVAASPCACASIEFEPRLEPDFSWGTGPRQIQLT
Ga0207657_100277283	3300025919	Corn Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVDGPPPEDGAAGEIGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT
Ga0207657_103342952	3300025919	Corn Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPGAESAADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFE
Ga0207657_107873342	3300025919	Corn Rhizosphere	MGRIEAARTAVLQWSRAVLALRGRSIEGPLPADAAAAEDADVFAGDNGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAQLVPVAAASPCTCASIEFEPRIEADFSWAAPSPRSMQLMA
Ga0207650_106040781	3300025925	Switchgrass Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPGAESAADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEAGFSWGQTQRHVQLT
Ga0207644_100251713	3300025931	Switchgrass Rhizosphere	MGRIESAREAVLQWSRAVLALRGRSLEGPFASDSPDGIDAIIGDTGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVSVAAASPCVCASIEFEPRVEVDFSWGTSQRPVQLMT
Ga0207690_100503331	3300025932	Corn Rhizosphere	EGSAMDRIEAAREAVLQWSRSVLALRGRSLEGPGAESAADDTASGEISLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT
Ga0207690_103355041	3300025932	Corn Rhizosphere	SVLALRGRSLDGPPPDASALPEDSFAETGLVMTPAQTAGFFARSSRWRCTGCGKVHVFSHVVPVVAASPCACASIEFEPRLEPDFSWGTGPRQIQLT
Ga0207691_105576831	3300025940	Miscanthus Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQ
Ga0207661_100204521	3300025944	Corn Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPGAESAADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRL
Ga0207679_113815102	3300025945	Corn Rhizosphere	LRGRALEGPLVEGPPPEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT
Ga0207658_100415272	3300025986	Switchgrass Rhizosphere	MGRIEAAREAVLQWSRSVLALRGRSIDGPLPDASALPEDGFAETGLVMTPAQTAGFFARSSRWRCTGCGKVHVFSHVVPVVAASPCACASIEFEPRLEPDFSWGTGPRQIQLT
Ga0207702_103839802	3300026078	Corn Rhizosphere	MGRIEAARAAVLQWSRSVLALRGRSLDGPLPADASADDGDLFASDNGLVMTPAQTAGFFARSSSWRCTGCGKVHVFSQLVPVAAASPCVCASIEFEPRIEADFAWAVSGPRQMQLMA
Ga0207641_114800202	3300026088	Switchgrass Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVDGPPPEDGAAGEIGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASI
Ga0207648_108165911	3300026089	Miscanthus Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPR
Ga0207676_114725642	3300026095	Switchgrass Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVDGPPPEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT
Ga0207674_100696783	3300026116	Corn Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRALEGPLVEGPPPDDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQIQLT
Ga0268265_102682461	3300028380	Switchgrass Rhizosphere	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADFSW
Ga0247822_119032731	3300028592	Soil	MGRIESAREAVLQWSRAVLALRGRSLEGPFASDSPDGIDAIIGDTGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVSVAAASPCVCASIEFEPRVEVDFSWGTSQ
Ga0170824_1113578792	3300031231	Forest Soil	GRAVPAARGRALDGPLPADAPPSDDADTIFDVTGLVMTPAQPAGFFARSSSWRCTGCGKVHMFSHVVPVVAASPCTCASIEFEPRLEVDFSWGTGQRPMQLTT
Ga0318516_106491241	3300031543	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLAAGALSSDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT
Ga0318573_101038272	3300031564	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLADGALLSDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT
Ga0318555_105950711	3300031640	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLAAGALSSDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQVQLT
Ga0318574_101405202	3300031680	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLADGALPSDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT
Ga0318572_103626812	3300031681	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLADGALPCDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHV
Ga0307405_103258092	3300031731	Rhizosphere	MSRIEAAREAVLQWSRAVLALRGRSLEGPSPAGMPSAEEIDTIFGETGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVAAASPCVCASIEFEPRLEADFSWGTSHRSMQLMT
Ga0318502_104996142	3300031747	Soil	GMDRIEAAREAVLQWSRSVLALRGRSLEGPLAAGALSSDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEPDFSWGQTQRQIQLT
Ga0318547_100850241	3300031781	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLAAGALSSDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQR
Ga0318565_105931201	3300031799	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLADGALPSDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFS
Ga0318568_109975101	3300031819	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLADGALPCDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRH
Ga0318567_101509622	3300031821	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLAEGVLPSDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT
Ga0318564_103116081	3300031831	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLADGALLSDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPR
Ga0318511_103991762	3300031845	Soil	NGYRRGSEESTMDRIEAAREAVLQWSRSVLALRGRSLEGPAADGAPLADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEPDFSWGQTQRQIQLT
Ga0318495_102444082	3300031860	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLADGALPCDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT
Ga0306919_112151461	3300031879	Soil	AREAVLQWSRSVLALRGRSLEGPAADGAPLADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEPDFSWGQTQRQIQLT
Ga0318551_100424221	3300031896	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPAADGAPLADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEPDFSWGQTQRQIQLT
Ga0318520_102516221	3300031897	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLADGALPCDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQVQLT
Ga0308175_1004221682	3300031938	Soil	MGRIEAARTAVLQWSRAVLALRGRSIEGPLPADAAAAEDADLFAGDNGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAQLVPVAAASPCTCASIEFEPRIEADFSWAAPSTRSMQLMA
Ga0308175_1020798781	3300031938	Soil	MGRIEAARAAVLEWSRSVLALRGRSIEGPLAGGVPSDDDLDTVIEDSGLVMTPAQTAGFFARSASWRCTGCGKVHEFSHVVPVVAASPCTCASIEFEPRLEVDFSW
Ga0308176_100797572	3300031996	Soil	MDRIEAAREAVLQWSRSVLALRGRPLEGPGAESAADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT
Ga0308176_103935391	3300031996	Soil	MGRIESAREAVLQWSRSVLALRGRMLEGPPLPGTLSPDEIDNILAENGLVMTPAQAAGFFARSASWRCTGCGKVHVFAHVVPVAAASPCVCASIEFEPRVEVDFSWGTSPAAVQLMT
Ga0308176_104448052	3300031996	Soil	MSRIEAARAAVLQWSRSVLALRGRSIEGPLAGGVPADDELDTIIEDTGLVMTPAQTAGFFARSASWRCTGCGKVHEFSHVVPVVAASPCTCASIEFEPRLEVDFSWGTPPRPMQLMT
Ga0306922_103145591	3300032001	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLAAGALSSDDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRQVQL
Ga0318556_102143481	3300032043	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPAADGAPLADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEAD
Ga0318558_101071532	3300032044	Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPAADGAPLADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEADFSWGQTQRHVQLT
Ga0307415_1000051691	3300032126	Rhizosphere	MSRIEAAREAVLQWSRAVLALRGRSLEGPSPAGMPSAEEIDTIFGETGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVAAASPCVCASIEFEPRLE
Ga0306920_1011095203	3300032261	Soil	STMDRIEAAREAVLQWSRSVLALRGRSLEGPAADGAPLADDTASGEIGLVMTPAQTAGFFARSSSWRCTGCGKVHVFAHVVPVVAASPCVCASIEFEPRLEPDFSWGQTQRQIQLT
Ga0373959_0054533_3_305	3300034820	Rhizosphere Soil	MDRIEAAREAVLQWSRSVLALRGRSLEGPLVEGPPLEDGAPGETGLVMTPAQTAGFFARSSSWRCTGCGKIHVFAHVVPVVAASPCVCASIEFEPRLEADF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103018

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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