Metagenome / Metatranscriptome Family F103203

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103203
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	48 residues
Representative Sequence	VLSRQCAECATRDGVPGAVSSAATTAAAISEQLAGHLPQDLRPA
Number of Associated Samples	80
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.98 %
% of genes near scaffold ends (potentially truncated)	94.06 %
% of genes from short scaffolds (< 2000 bps)	93.07 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.347 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (56.436 % of family members)
Environment Ontology (ENVO)	Unclassified (61.386 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (51.485 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.61% β-sheet: 0.00% Coil/Unstructured: 51.39%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF04909	Amidohydro_2	27.72
PF07969	Amidohydro_3	11.88
PF00342	PGI	5.94
PF13271	DUF4062	2.97
PF02518	HATPase_c	1.98
PF04321	RmlD_sub_bind	1.98
PF10009	DUF2252	1.98
PF13191	AAA_16	0.99
PF00582	Usp	0.99
PF12802	MarR_2	0.99
PF08281	Sigma70_r4_2	0.99
PF01475	FUR	0.99
PF00903	Glyoxalase	0.99
PF02771	Acyl-CoA_dh_N	0.99
PF12724	Flavodoxin_5	0.99
PF10708	DUF2510	0.99
PF00487	FA_desaturase	0.99
PF00441	Acyl-CoA_dh_1	0.99
PF12697	Abhydrolase_6	0.99
PF00009	GTP_EFTU	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0166	Glucose-6-phosphate isomerase	Carbohydrate transport and metabolism [G]	5.94
COG0451	Nucleoside-diphosphate-sugar epimerase	Cell wall/membrane/envelope biogenesis [M]	3.96
COG0702	Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains	General function prediction only [R]	3.96
COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	Cell wall/membrane/envelope biogenesis [M]	3.96
COG1087	UDP-glucose 4-epimerase	Cell wall/membrane/envelope biogenesis [M]	1.98
COG1088	dTDP-D-glucose 4,6-dehydratase	Cell wall/membrane/envelope biogenesis [M]	1.98
COG1089	GDP-D-mannose dehydratase	Cell wall/membrane/envelope biogenesis [M]	1.98
COG1090	NAD dependent epimerase/dehydratase family enzyme	General function prediction only [R]	1.98
COG1091	dTDP-4-dehydrorhamnose reductase	Cell wall/membrane/envelope biogenesis [M]	1.98
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.98
COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	Inorganic ion transport and metabolism [P]	0.99
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.99
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.35 %
Unclassified	root	N/A	34.65 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.35 %
Unclassified	root	N/A	34.65 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.35 %
Unclassified	root	N/A	34.65 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	54.46 %
Unclassified	root	N/A	34.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	45.54 %
Unclassified	root	N/A	34.65 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.97 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.65 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	27.72 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.98 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.99 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.65 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.98 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.99 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.99 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.65 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.98 %
Ktedonobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae	0.99 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.99 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.99 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.65 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.98 %
unclassified Ktedonobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → unclassified Ktedonobacteraceae	0.99 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.99 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.99 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.65 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.98 %
Mycobacterium innocens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium innocens	0.99 %
Ktedonobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → unclassified Ktedonobacteraceae → Ktedonobacteraceae bacterium	0.99 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.99 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_103616945	Not Available	1584	Open in IMG/M
3300005332\|Ga0066388_107345395	All Organisms → cellular organisms → Bacteria → Terrabacteria group	553	Open in IMG/M
3300005471\|Ga0070698_100204940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1907	Open in IMG/M
3300005535\|Ga0070684_100037117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4177	Open in IMG/M
3300005764\|Ga0066903_100421092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2211	Open in IMG/M
3300005764\|Ga0066903_107948034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → unclassified Ktedonobacteraceae → Ktedonobacteraceae bacterium	544	Open in IMG/M
3300006578\|Ga0074059_11502282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	606	Open in IMG/M
3300006804\|Ga0079221_11504629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	540	Open in IMG/M
3300006954\|Ga0079219_12306081	All Organisms → cellular organisms → Bacteria → Terrabacteria group	520	Open in IMG/M
3300009553\|Ga0105249_11238526	Not Available	817	Open in IMG/M
3300009792\|Ga0126374_11539105	Not Available	547	Open in IMG/M
3300010043\|Ga0126380_10347065	Not Available	1079	Open in IMG/M
3300010043\|Ga0126380_10607952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	862	Open in IMG/M
3300010046\|Ga0126384_10364003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	1210	Open in IMG/M
3300010047\|Ga0126382_12354899	Not Available	516	Open in IMG/M
3300010360\|Ga0126372_13183987	Not Available	510	Open in IMG/M
3300010362\|Ga0126377_10004595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10072	Open in IMG/M
3300010366\|Ga0126379_10722385	Not Available	1091	Open in IMG/M
3300010366\|Ga0126379_13163771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	551	Open in IMG/M
3300010376\|Ga0126381_102174793	Not Available	798	Open in IMG/M
3300010398\|Ga0126383_10505594	Not Available	1268	Open in IMG/M
3300010398\|Ga0126383_13320223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	526	Open in IMG/M
3300012361\|Ga0137360_10513060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1021	Open in IMG/M
3300012971\|Ga0126369_12148901	Not Available	646	Open in IMG/M
3300016341\|Ga0182035_10780031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	837	Open in IMG/M
3300016371\|Ga0182034_11175181	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300016371\|Ga0182034_12082315	Not Available	501	Open in IMG/M
3300017821\|Ga0187812_1098936	Not Available	954	Open in IMG/M
3300017947\|Ga0187785_10275270	Not Available	764	Open in IMG/M
3300017955\|Ga0187817_10957068	Not Available	548	Open in IMG/M
3300020579\|Ga0210407_11242780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	559	Open in IMG/M
3300021170\|Ga0210400_11303282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300021405\|Ga0210387_10619379	Not Available	961	Open in IMG/M
3300021479\|Ga0210410_10690288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	902	Open in IMG/M
3300021559\|Ga0210409_10331432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1369	Open in IMG/M
3300021560\|Ga0126371_13927495	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300025916\|Ga0207663_10053268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2527	Open in IMG/M
3300026078\|Ga0207702_10737304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	972	Open in IMG/M
3300027775\|Ga0209177_10450606	All Organisms → cellular organisms → Bacteria → Terrabacteria group	526	Open in IMG/M
3300028792\|Ga0307504_10170968	Not Available	752	Open in IMG/M
3300029636\|Ga0222749_10502976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	656	Open in IMG/M
3300031543\|Ga0318516_10143337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1370	Open in IMG/M
3300031543\|Ga0318516_10799541	Not Available	533	Open in IMG/M
3300031543\|Ga0318516_10842114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	517	Open in IMG/M
3300031544\|Ga0318534_10040888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2573	Open in IMG/M
3300031546\|Ga0318538_10597173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	599	Open in IMG/M
3300031572\|Ga0318515_10557244	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300031572\|Ga0318515_10605301	Not Available	582	Open in IMG/M
3300031572\|Ga0318515_10637755	Not Available	565	Open in IMG/M
3300031573\|Ga0310915_10099949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1959	Open in IMG/M
3300031573\|Ga0310915_11229790	Not Available	517	Open in IMG/M
3300031640\|Ga0318555_10402170	Not Available	742	Open in IMG/M
3300031640\|Ga0318555_10556554	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	621	Open in IMG/M
3300031668\|Ga0318542_10772855	Not Available	503	Open in IMG/M
3300031713\|Ga0318496_10655116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	580	Open in IMG/M
3300031719\|Ga0306917_11164401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	599	Open in IMG/M
3300031723\|Ga0318493_10418428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	734	Open in IMG/M
3300031736\|Ga0318501_10293649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium innocens	866	Open in IMG/M
3300031744\|Ga0306918_11093176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	618	Open in IMG/M
3300031748\|Ga0318492_10707358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	540	Open in IMG/M
3300031751\|Ga0318494_10739347	Not Available	576	Open in IMG/M
3300031763\|Ga0318537_10287698	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300031765\|Ga0318554_10079773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1824	Open in IMG/M
3300031765\|Ga0318554_10799107	Not Available	527	Open in IMG/M
3300031769\|Ga0318526_10067068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1396	Open in IMG/M
3300031777\|Ga0318543_10193815	Not Available	901	Open in IMG/M
3300031779\|Ga0318566_10131294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1238	Open in IMG/M
3300031780\|Ga0318508_1153333	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300031781\|Ga0318547_10983934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300031782\|Ga0318552_10064556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1759	Open in IMG/M
3300031819\|Ga0318568_10092037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1807	Open in IMG/M
3300031819\|Ga0318568_10450664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	802	Open in IMG/M
3300031821\|Ga0318567_10316739	All Organisms → cellular organisms → Bacteria → Terrabacteria group	880	Open in IMG/M
3300031835\|Ga0318517_10456447	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300031835\|Ga0318517_10494638	Not Available	551	Open in IMG/M
3300031890\|Ga0306925_12011149	Not Available	545	Open in IMG/M
3300031912\|Ga0306921_12721395	All Organisms → cellular organisms → Bacteria → Terrabacteria group	508	Open in IMG/M
3300031947\|Ga0310909_10792307	All Organisms → cellular organisms → Bacteria → Terrabacteria group	783	Open in IMG/M
3300031947\|Ga0310909_11559677	Not Available	525	Open in IMG/M
3300031954\|Ga0306926_10950690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1026	Open in IMG/M
3300031954\|Ga0306926_11574413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	755	Open in IMG/M
3300031959\|Ga0318530_10146649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	957	Open in IMG/M
3300032001\|Ga0306922_12271078	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300032008\|Ga0318562_10895089	Not Available	506	Open in IMG/M
3300032009\|Ga0318563_10332448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	822	Open in IMG/M
3300032035\|Ga0310911_10569936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	657	Open in IMG/M
3300032054\|Ga0318570_10106181	All Organisms → cellular organisms → Bacteria	1230	Open in IMG/M
3300032059\|Ga0318533_10922990	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300032059\|Ga0318533_11089193	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300032063\|Ga0318504_10461618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	607	Open in IMG/M
3300032065\|Ga0318513_10215542	Not Available	926	Open in IMG/M
3300032066\|Ga0318514_10046336	Not Available	2090	Open in IMG/M
3300032066\|Ga0318514_10334041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	802	Open in IMG/M
3300032067\|Ga0318524_10306661	Not Available	821	Open in IMG/M
3300032067\|Ga0318524_10718715	Not Available	527	Open in IMG/M
3300032076\|Ga0306924_10031210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5784	Open in IMG/M
3300032205\|Ga0307472_100344026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1221	Open in IMG/M
3300033289\|Ga0310914_10321892	Not Available	1396	Open in IMG/M
3300033290\|Ga0318519_10594497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	672	Open in IMG/M
3300033290\|Ga0318519_10639262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	648	Open in IMG/M
3300033290\|Ga0318519_10899029	Not Available	547	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.02%
Host-Associated	Host-Associated	1.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.04%
Aquatic	Environmental → Aquatic	1.98%
Plants	Host-Associated → Plants	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.04%
Freshwater	Environmental → Aquatic → Freshwater	1.98%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.11%
Loam	Environmental → Terrestrial → Soil → Loam	5.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.99%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	68.32%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.97%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	56.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.97%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.99%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1036169452	3300000956	Soil	MRPRGGVPEAVSLAAKTAATISEQLAGHLPQDLRPA*
Ga0066388_1073453952	3300005332	Tropical Forest Soil	PAFQMYYQMGNFAPWRGAAWVLLSERTAILSRQCAETATHAGVPDAVSSAAAAAAKISQQIAGYVPDNLRPA*
Ga0070698_1002049403	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	ATVLSRRYAECATRDGVPEAVSSAATTAAAISEQLAGHLLQDLRPA*
Ga0070684_1000371171	3300005535	Corn Rhizosphere	TALLSRQCAECAMRDGAPEAVSAAATTAAKISEQLAGHLPQDLRPA*
Ga0066903_1004210923	3300005764	Tropical Forest Soil	CATHDGVPEAVGSAAAAAAGIAEQLAGHVPQDLRPA*
Ga0066903_1079480342	3300005764	Tropical Forest Soil	SRQCAQCATQDGVPEVVRPAAEAAAKISEQLAGHLPQELRPA*
Ga0074059_115022821	3300006578	Soil	DEELRTVAKRVWVPPSERATVLSRRYAECATRDGVPEAVSSAATTAAAISEQLAGHLPQDLRPA*
Ga0079221_115046292	3300006804	Agricultural Soil	LLSERATVLSRQCAECAARDGVPWAVSSAATAAATISEQLAGHLPQDLQPA*
Ga0079219_123060811	3300006954	Agricultural Soil	VLSRQCAECAARNGVPEAVSSAATTAATVSEQLAGHLPQDLRPAKDKLVTDPAS*
Ga0105249_112385261	3300009553	Switchgrass Rhizosphere	LLSERTALLSRQCAECAMRDGAPEAVSAAATTAAKISEQLAGHLPQDLRPA*
Ga0126374_115391051	3300009792	Tropical Forest Soil	LLTERAAVLSRQCAECATRDGIPEGVSSAAMTAAAISEQLATHVPQDLRPA*
Ga0126380_103470652	3300010043	Tropical Forest Soil	VLSRQCAACATRDGVTEAVGSAAAAAAGISDELAKHIRKDLRSA*
Ga0126380_106079522	3300010043	Tropical Forest Soil	RQCAECAMHDGVPEAVSSAATAAAAISEQLAGHVPHELRPA*
Ga0126384_103640033	3300010046	Tropical Forest Soil	AAVLSRQCAECATRDGVPEAVSSAATTAAAISEQLAGPLPQDLRPA*
Ga0126382_123548992	3300010047	Tropical Forest Soil	PWRNAAWVLLSERAGVLSRQCAECAAQDGIPEGVSSAATTAAAISAQLAGHVPQHLRPA*
Ga0126372_131839871	3300010360	Tropical Forest Soil	AGCATRDGAPQAVGSAAAAAEGIAEQLAGHLPQGLRPA*
Ga0126377_1000459510	3300010362	Tropical Forest Soil	CERAAVLSRQCAGCAMRDGVPEVVSSAAVTAAAISEQLARHVPHGLRPG*
Ga0126379_107223851	3300010366	Tropical Forest Soil	RQCAQCAAQAGVPEAVGLAATTAATISEQLAGHLPQDLRPA*
Ga0126379_131637712	3300010366	Tropical Forest Soil	SERAAVLSRQLAECATQDGVPEGVSSAATTAAAISAQLAAHVPQDLRPV*
Ga0126381_1021747931	3300010376	Tropical Forest Soil	ERAAVLSRQCAEFATQDGIPDGVSSAATTAAAISAQLAGHVPQDLRPA*
Ga0126383_105055941	3300010398	Tropical Forest Soil	LSRQCAECATRDGVPEAVSSAATTAATISDQLAAHLPQDLRPA*
Ga0126383_133202231	3300010398	Tropical Forest Soil	ECATRDGVPEAVSSAATTAATISEQLAGHLPQDLRPA*
Ga0137360_105130603	3300012361	Vadose Zone Soil	MRDGVPEAVSSAATTAATISEQLAGHLPEDLRPA*
Ga0126369_121489011	3300012971	Tropical Forest Soil	ERATVLSRQCAECATWDGVPVAVSSAATTAATISEQLAAHLPPDLRPA*
Ga0182035_107800311	3300016341	Soil	RVLLVERAAVLSRRCVDCAARDGVPETVGSAAAAAEGIAEQLAGHVPQELRPA
Ga0182034_111751812	3300016371	Soil	QCAECATQDGIPEGVSSAATTAAAISAQLAGHLPQDLRPA
Ga0182034_120823152	3300016371	Soil	LSRQLAECAARDGVPEAVSSAATAAAAISEQLAGHLPQDLRPA
Ga0187812_10989361	3300017821	Freshwater Sediment	MGNFVPWRKATWMLLSERAAMLSRQCAQTAGHDEVPAAVSAAATTASAISEQLAGHLPQDLRPV
Ga0187785_102752702	3300017947	Tropical Peatland	AVLSRQCAGCAMRDGVPEAVSSAAVTAAAISEQLAGHVPHGLRPA
Ga0187817_109570681	3300017955	Freshwater Sediment	NFVPWRKAAWVLLSERAAMLSRQCAQTAGHDEVPAAVSAAATTASAISEQLAGHLPQDLRPV
Ga0210407_112427801	3300020579	Soil	RQCAEFATRDGVPEAVSSAATTAAAISEQLAAHLPQDLRPA
Ga0210400_113032821	3300021170	Soil	RYAECATRDGVPEAVSSAATTAAAISEQLAGHLLQDLRPA
Ga0210387_106193792	3300021405	Soil	VPPSERATVLSRRYAECATRDGVPEAVSSAATTAAAISEQLAGHLLQDLRPA
Ga0210410_106902883	3300021479	Soil	VLLSERAAVLSRQCAEFATRDGVPEAVSSAATTAAAISEQLAAHLPQDMRP
Ga0210409_103314321	3300021559	Soil	SRRCADCATRDGVPEAVSSAATTAAAISEQLAGHLPQDLRPA
Ga0126371_139274951	3300021560	Tropical Forest Soil	VLSRQCAECATRDGVPGAVSSAATTAAAISEQLAGHLPQDLRPA
Ga0207663_100532681	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VLSRRCAECATQDGVPEAVSSAAGAAAAISERLAGHVPHELRPA
Ga0207702_107373041	3300026078	Corn Rhizosphere	SRRCAECATEDGVPEAVSSAAGAAAAISERLAGHVPHELRPA
Ga0209177_104506061	3300027775	Agricultural Soil	ATVLSRQCAECAARNGVPEAVSSAATTAATVSEQLAGHLPQDLRPAKDKLVTDPAS
Ga0307504_101709681	3300028792	Soil	CAECATRDGVPEAVGSAATTAAAISEQLAGHLPQDLRPA
Ga0222749_105029762	3300029636	Soil	VLLSERAAVLSRQCAEFATRDGVPEAVSSAATTAAAISEQLAGHLLQDLRPA
Ga0318516_101433373	3300031543	Soil	PTVLSRQCAECAMRDGLPEAVSSAATTAATISEQLAGHLPQDLRPAAS
Ga0318516_107995412	3300031543	Soil	VLLSERAAVLSRQCAECATRDGVPEAVSSAATTAAAISEQLAAHVPQDLRPA
Ga0318516_108421141	3300031543	Soil	ELSRQCAECAMQDGVPEGVSSAATAAAAISEQLAGHVPQDLRPA
Ga0318534_100408882	3300031544	Soil	VLLSEWPTVLSRQCAECAMRDGLPEAVSSAATTAATISEQLAGHLPQDLRPAAS
Ga0318538_105971731	3300031546	Soil	PWRNAAWVLLCERAAVLARRCVECATRDGVPETVGSAAAAAEGIAEQLAGHVPQELRPA
Ga0318515_105572442	3300031572	Soil	NAAWVLLSERAAVLSRQCAECATQDGIPEGVSSAATTAAAISAQLAGHLPQDLRPA
Ga0318515_106053011	3300031572	Soil	QCAETGTHDGVPVAVSSAATTAAAISAQLAGHVPQDLRPA
Ga0318515_106377551	3300031572	Soil	VPWRNAAWVLLSERATVLSRQCAECAARDDIPEAVSSAAASAARISEQLAAHVPQDLRPA
Ga0310915_100999491	3300031573	Soil	CVTQDDTPEEVSSAATTAAAIAEQIAGHVPQHLRPA
Ga0310915_112297901	3300031573	Soil	QLAECAARDGVPEAVSSAATAAAAISEQLAGHLPQDLRPA
Ga0318555_104021701	3300031640	Soil	SRQCAECATRDGVPEAVSSAATTAAAISEQLAAHVPQDLRPA
Ga0318555_105565542	3300031640	Soil	SVRITGVMWTREAAECVTRDGVPEAVISAAATAAAISEQLAGYLPQDLRSA
Ga0318542_107728553	3300031668	Soil	AVLSRQCAECATGDGVPEAVSSAATTAATISEQLAGHLPQDLRPA
Ga0318496_106551161	3300031713	Soil	PWRNAAWVLLSERAAVLSRQCADCARRDGVPTTVSSAAAAAARISEQLAGYVPQELRPA
Ga0306917_111644012	3300031719	Soil	ARRSAAWVLLSEWPTVLSRQCAECAMRDGLPEAVSSAATTAATISEQLAGHLPQDLRPAA
Ga0318493_104184281	3300031723	Soil	AVLSRQCAECAMQDGVPEGVSSAATAAAAISEQLAGHVPQDLRPA
Ga0318501_102936491	3300031736	Soil	FVPWRKAAWVLLSERAAVLSRQCAECATQDGIPEGVSSAATAAAAISEQLAGYVPQNLRP
Ga0306918_110931761	3300031744	Soil	AWVLLSERAAVLSRQCAECATRDGVPDAVSSAAATAAKISEQLAGHLPQDLRPA
Ga0318492_107073582	3300031748	Soil	AILSRQCAECATRDGVPEAVSSAAAAAAAISEQLAGYVPDNLRPA
Ga0318494_107393471	3300031751	Soil	LLSERATVLSRQCAECAARDDIPEAVSSAATTSATISEQLAAHVPQDLRPA
Ga0318537_102876981	3300031763	Soil	PWRNAAWVLLSERATVLSRQCAQCAAQAGVPEAVSSAATTAATISEQLAGHLPQDLRPA
Ga0318554_100797731	3300031765	Soil	ATGDGVPEAVSSAATTAATISEQLAGHLPQDLRPA
Ga0318554_107991071	3300031765	Soil	LLAERAAVLSRQCAECATRDGVPEGVSSAATTATAISEQLAGHLPQNLRPA
Ga0318526_100670683	3300031769	Soil	SRQCAECVTQDDTPEEVSSAATTAAAIAEQIAGHVPQHLRPA
Ga0318543_101938152	3300031777	Soil	ATVLSRQCAQCAAQAGVPEAVSSAATTAATISEQLAGHLPQDLRPA
Ga0318566_101312941	3300031779	Soil	AVLSRQCAECVTQDGTPEEVSSAATTAAAIAEQIAGHVPQHLRPA
Ga0318508_11533331	3300031780	Soil	CATRDGVPGAVSSAATTAATISAQLAGHLPQDLRPA
Ga0318547_109839342	3300031781	Soil	VLLSERAAVLSRQCAECAMQDGVPEGVSSAATAAAAISEQLAGHVPQDLRPA
Ga0318552_100645563	3300031782	Soil	QMGNFAPWRDAAWVLLSERTAMLSRQCAEATKREGVPAAVSDAAAAAAGISQQLAGYVPPDLRPA
Ga0318568_100920373	3300031819	Soil	AAWVLLSERAAVLSRQCAECVTQDGTPEEVSSAATTAAAIAEQIAGHVPQHLRPA
Ga0318568_104506641	3300031819	Soil	VPWRNAAWVLLSERAAVLSRQCAECATRDGVPDAVSSAAATAAKISEQLAGHLPQDLRPA
Ga0318567_103167392	3300031821	Soil	SERAAVLSRQCAECATRDGVPEAVSSASATAAAISEQLAGHLPQDLRPA
Ga0318517_104564471	3300031835	Soil	CAECATQDGIPEGVSSAATTAAAISAQLAGHLPQDLRPA
Ga0318517_104946381	3300031835	Soil	GPRRLARRSAAWVLLSEWPTVLSRQCAECAMRDGLPEAVSSAATTAATISEQLAGHLPQDLRPAAS
Ga0306925_120111491	3300031890	Soil	ATVLSRQCAECAARDDIPEAVSSAATTSATISEQLAAHVPQDLRPA
Ga0306921_127213952	3300031912	Soil	FVPWRNAAWVLLAERAAVLSRQCAECATRDGVPEGVSSAATTATAISEQLAGHLPQNLRP
Ga0310909_107923071	3300031947	Soil	VLAHQCAVCATHDGVPASVGSAAAAAAGIAEQLAGHVP
Ga0310909_115596771	3300031947	Soil	ERAAVLARQCAECAMQDGVPEEVSAAATTAAAISEQFAGHVPQDLRPA
Ga0306926_109506903	3300031954	Soil	CAHCATRDGVPEAVSSAATTAAAISEQLAGHLPQDLRPA
Ga0306926_115744131	3300031954	Soil	ECAARDDIPEAVSSAAASATISEQLAGHLPQDLRPA
Ga0318530_101466493	3300031959	Soil	AVLSRQCAECVTQDDTPEEVSSAATTAAAIAEQIAGHVPQHLRPA
Ga0306922_122710782	3300032001	Soil	MWTREAAECATRDGVPEAVISAAATAAAISEQLAGYLPQD
Ga0318562_108950892	3300032008	Soil	AWVLLSERATVLSRQCAECAARDDIPEAVSSAAASARISEQLAGHLPQDLRPA
Ga0318563_103324482	3300032009	Soil	CADCATQAGVPEAVSSAATTAATIAEQLAGHLPQDLRPV
Ga0310911_105699362	3300032035	Soil	VLLTERAAVLSRQCAECATRDGAPQAVSSAATTAATISEQLAGHLPQDLRPAAS
Ga0318570_101061811	3300032054	Soil	VLLSERATVLSRQCADCARRDGVPTTVSSAAAAAARISEQLAGYVPQELRPA
Ga0318533_109229901	3300032059	Soil	PWRNAAWVLLSERAAVLSRQCAECATRDGVPEAVSSASATAAAISEQLAGHLPQDLRPA
Ga0318533_110891932	3300032059	Soil	LLSERATVLSRQCAQCAAQAGVPEAVSSAATTAATISEQLAGHLPQDLRPA
Ga0318504_104616181	3300032063	Soil	VLSRQCAECATRDGVPDAVSSAAATAAKISEQLAGHLPQDLRPA
Ga0318513_102155422	3300032065	Soil	AECAARDGVPEAVSSAATAAAAISEQLAGHLPQDLRPA
Ga0318514_100463363	3300032066	Soil	VLLSERATVLSRQCAQCAAQAGVPEAVSSAATTAATISEQLAGHLPQDLRPA
Ga0318514_103340411	3300032066	Soil	CADCATQAGVPEAVSSAATTAATIAEQFAGHLPQDLRPA
Ga0318524_103066612	3300032067	Soil	LLSERAAVLSRQCAETGTHDGVPVAVSSAATTAAAISAQLAGHVPQDLRPA
Ga0318524_107187152	3300032067	Soil	CAECATRDGVPEAVSSAAATAATISEQLAGHLPQDLRPA
Ga0306924_100312105	3300032076	Soil	RQCAECVTQDDTPEEVSSAATTAAAIAEQIAGHVPQHLRPA
Ga0307472_1003440263	3300032205	Hardwood Forest Soil	NAAWVLRSERATALSQQCAECATRDGVPEAVSSAATAAATISEQLAGHLPQDLRPAQDKLVTDPAS
Ga0310914_103218922	3300033289	Soil	CAARDGVPEAVSSAATAAAAISEQLAGHLPQDLRPA
Ga0318519_105944971	3300033290	Soil	AECAMQDGVPEGVSSAATAAAAISEQLAGHVPQDLRPA
Ga0318519_106392622	3300033290	Soil	SERAAMLSRQCADCAARDGVSEGVSSAATTAAAISDQLAGHLPQDLRPA
Ga0318519_108990291	3300033290	Soil	SRQCANTATNDGIPAAISSAAATAAAIAEQLAGHVPQDLRPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103203

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences