Metagenome / Metatranscriptome Family F103332

Basic Information
Family ID	F103332
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	94 residues
Representative Sequence	MSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNAAEREVIARAVADRPARFSELYEVLIGEIKRRRAESR
Number of Associated Samples	89
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.33 %
% of genes near scaffold ends (potentially truncated)	45.54 %
% of genes from short scaffolds (< 2000 bps)	84.16 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (53.465 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (9.901 % of family members)
Environment Ontology (ENVO)	Unclassified (49.505 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (58.416 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.30% β-sheet: 1.12% Coil/Unstructured: 41.57%
Feature Viewer

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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF12697	Abhydrolase_6	9.90
PF01594	AI-2E_transport	4.95
PF00614	PLDc	3.96
PF03458	Gly_transporter	3.96
PF13442	Cytochrome_CBB3	1.98
PF13091	PLDc_2	1.98
PF13418	Kelch_4	0.99
PF07690	MFS_1	0.99
PF00196	GerE	0.99
PF04545	Sigma70_r4	0.99
PF03100	CcmE	0.99
PF06772	LtrA	0.99
PF01935	DUF87	0.99
PF01471	PG_binding_1	0.99
PF03176	MMPL	0.99
PF00903	Glyoxalase	0.99
PF03098	An_peroxidase	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	4.95
COG1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	Lipid transport and metabolism [I]	3.96
COG2860	Uncharacterized membrane protein YeiH	Function unknown [S]	3.96
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.99
COG2332	Cytochrome c biogenesis protein CcmE	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.99
COG4292	Low temperature requirement protein LtrA (function unknown)	Function unknown [S]	0.99

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.47 %
Unclassified	root	N/A	46.53 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.47 %
Unclassified	root	N/A	46.53 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.47 %
Unclassified	root	N/A	46.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.53 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	39.60 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.53 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	19.80 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.53 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7.92 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.53 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2.97 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.99 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.53 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.99 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.53 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	2.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.99 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.53 %
unclassified Amycolatopsis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis	2.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.99 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.53 %
Amycolatopsis sp. DSM 110486	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. DSM 110486	2.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.99 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_11033329	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300000891\|JGI10214J12806_10863314	Not Available	994	Open in IMG/M
3300000953\|JGI11615J12901_11217622	Not Available	626	Open in IMG/M
3300000956\|JGI10216J12902_101418476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2567	Open in IMG/M
3300003987\|Ga0055471_10001645	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3558	Open in IMG/M
3300004013\|Ga0055465_10005623	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2220	Open in IMG/M
3300004114\|Ga0062593_100284274	Not Available	1396	Open in IMG/M
3300004114\|Ga0062593_103553652	Not Available	501	Open in IMG/M
3300004156\|Ga0062589_100032744	All Organisms → cellular organisms → Bacteria	2677	Open in IMG/M
3300004157\|Ga0062590_100118152	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1731	Open in IMG/M
3300004643\|Ga0062591_100044473	All Organisms → cellular organisms → Bacteria	2472	Open in IMG/M
3300005329\|Ga0070683_100024168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5439	Open in IMG/M
3300005329\|Ga0070683_100329851	Not Available	1453	Open in IMG/M
3300005334\|Ga0068869_100110210	Not Available	2093	Open in IMG/M
3300005339\|Ga0070660_100068728	All Organisms → cellular organisms → Bacteria	2762	Open in IMG/M
3300005340\|Ga0070689_101326044	Not Available	649	Open in IMG/M
3300005341\|Ga0070691_10109116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1382	Open in IMG/M
3300005345\|Ga0070692_10248123	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1064	Open in IMG/M
3300005345\|Ga0070692_10366212	All Organisms → cellular organisms → Bacteria → Terrabacteria group	900	Open in IMG/M
3300005356\|Ga0070674_101291418	Not Available	650	Open in IMG/M
3300005444\|Ga0070694_100710507	Not Available	818	Open in IMG/M
3300005455\|Ga0070663_101021109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. DSM 110486	720	Open in IMG/M
3300005456\|Ga0070678_100475516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1099	Open in IMG/M
3300005459\|Ga0068867_100139962	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1890	Open in IMG/M
3300005466\|Ga0070685_10409606	All Organisms → cellular organisms → Bacteria → Terrabacteria group	941	Open in IMG/M
3300005530\|Ga0070679_100199993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1965	Open in IMG/M
3300005535\|Ga0070684_100275156	Not Available	1542	Open in IMG/M
3300005543\|Ga0070672_101575794	Not Available	589	Open in IMG/M
3300005577\|Ga0068857_101901416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300005578\|Ga0068854_100360256	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1193	Open in IMG/M
3300005615\|Ga0070702_100790644	Not Available	733	Open in IMG/M
3300005616\|Ga0068852_101141505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. DSM 110486	800	Open in IMG/M
3300005616\|Ga0068852_101422404	Not Available	716	Open in IMG/M
3300005617\|Ga0068859_100599012	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1195	Open in IMG/M
3300005937\|Ga0081455_10035799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4430	Open in IMG/M
3300005937\|Ga0081455_10098173	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2358	Open in IMG/M
3300005937\|Ga0081455_10637183	Not Available	689	Open in IMG/M
3300006358\|Ga0068871_101920707	Not Available	563	Open in IMG/M
3300006573\|Ga0074055_11644509	Not Available	516	Open in IMG/M
3300006579\|Ga0074054_11943868	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300006581\|Ga0074048_13273953	Not Available	661	Open in IMG/M
3300006605\|Ga0074057_12206508	Not Available	897	Open in IMG/M
3300006969\|Ga0075419_10565670	Not Available	796	Open in IMG/M
3300009098\|Ga0105245_10041177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4118	Open in IMG/M
3300009098\|Ga0105245_10070902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3164	Open in IMG/M
3300009174\|Ga0105241_11117300	All Organisms → cellular organisms → Bacteria → Terrabacteria group	743	Open in IMG/M
3300009176\|Ga0105242_10928163	Not Available	873	Open in IMG/M
3300009545\|Ga0105237_10554515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1156	Open in IMG/M
3300009551\|Ga0105238_11388199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	729	Open in IMG/M
3300010400\|Ga0134122_10505994	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1094	Open in IMG/M
3300011119\|Ga0105246_12170354	Not Available	540	Open in IMG/M
3300012914\|Ga0157297_10070486	All Organisms → cellular organisms → Bacteria → Terrabacteria group	975	Open in IMG/M
3300012943\|Ga0164241_10735015	Not Available	717	Open in IMG/M
3300012951\|Ga0164300_10617928	Not Available	642	Open in IMG/M
3300012958\|Ga0164299_10381278	All Organisms → cellular organisms → Bacteria → Terrabacteria group	899	Open in IMG/M
3300012960\|Ga0164301_10938520	Not Available	675	Open in IMG/M
3300012984\|Ga0164309_11713488	Not Available	539	Open in IMG/M
3300012985\|Ga0164308_10024870	All Organisms → cellular organisms → Bacteria	3561	Open in IMG/M
3300012988\|Ga0164306_10875738	All Organisms → cellular organisms → Bacteria → Terrabacteria group	730	Open in IMG/M
3300012989\|Ga0164305_10950542	Not Available	726	Open in IMG/M
3300013104\|Ga0157370_10827730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	842	Open in IMG/M
3300013104\|Ga0157370_11374829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	636	Open in IMG/M
3300013307\|Ga0157372_12369698	Not Available	610	Open in IMG/M
3300013308\|Ga0157375_11933462	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	701	Open in IMG/M
3300014301\|Ga0075323_1003843	All Organisms → cellular organisms → Bacteria	2251	Open in IMG/M
3300014311\|Ga0075322_1008654	All Organisms → cellular organisms → Bacteria	1924	Open in IMG/M
3300014326\|Ga0157380_10372946	Not Available	1344	Open in IMG/M
3300014745\|Ga0157377_10122773	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1576	Open in IMG/M
3300015374\|Ga0132255_105665923	Not Available	528	Open in IMG/M
3300017792\|Ga0163161_10708766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	839	Open in IMG/M
3300020082\|Ga0206353_10590208	Not Available	708	Open in IMG/M
3300020610\|Ga0154015_1065864	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300022467\|Ga0224712_10049845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1624	Open in IMG/M
3300022883\|Ga0247786_1025734	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1129	Open in IMG/M
3300022883\|Ga0247786_1056058	Not Available	804	Open in IMG/M
3300022898\|Ga0247745_1039000	Not Available	727	Open in IMG/M
3300022901\|Ga0247788_1088825	Not Available	603	Open in IMG/M
3300022915\|Ga0247790_10018302	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1483	Open in IMG/M
3300023102\|Ga0247754_1111380	Not Available	666	Open in IMG/M
3300024055\|Ga0247794_10024757	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300025552\|Ga0210142_1000015	All Organisms → cellular organisms → Bacteria	47277	Open in IMG/M
3300025556\|Ga0210120_1003122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3637	Open in IMG/M
3300025559\|Ga0210087_1010330	All Organisms → cellular organisms → Bacteria	1983	Open in IMG/M
3300025567\|Ga0210076_1025288	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1268	Open in IMG/M
3300025912\|Ga0207707_10285466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1429	Open in IMG/M
3300025912\|Ga0207707_10840907	Not Available	762	Open in IMG/M
3300025917\|Ga0207660_10999508	Not Available	682	Open in IMG/M
3300025919\|Ga0207657_10333852	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300025921\|Ga0207652_11162917	Not Available	673	Open in IMG/M
3300025935\|Ga0207709_11447286	Not Available	569	Open in IMG/M
3300025942\|Ga0207689_10472390	Not Available	1049	Open in IMG/M
3300025942\|Ga0207689_10921281	Not Available	737	Open in IMG/M
3300025942\|Ga0207689_11041255	Not Available	690	Open in IMG/M
3300026041\|Ga0207639_11783128	Not Available	576	Open in IMG/M
3300026089\|Ga0207648_10420737	Not Available	1213	Open in IMG/M
3300026095\|Ga0207676_12304488	Not Available	536	Open in IMG/M
3300026142\|Ga0207698_10235862	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1664	Open in IMG/M
3300028592\|Ga0247822_11787600	Not Available	524	Open in IMG/M
3300028802\|Ga0307503_10769684	Not Available	547	Open in IMG/M
3300031562\|Ga0310886_10380085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. DSM 110486	828	Open in IMG/M
3300031858\|Ga0310892_11256388	Not Available	529	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.41%
Host-Associated	Host-Associated	40.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.47%
Plants	Host-Associated → Plants	40.59%
Aquatic	Environmental → Aquatic	5.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.47%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.80%
Marine	Environmental → Aquatic → Marine	5.94%
Roots	Host-Associated → Plants → Roots	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.63%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.82%
Loam	Environmental → Terrestrial → Soil → Loam	14.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.85%
Wetlands	Environmental → Aquatic → Marine → Wetlands	5.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.99%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.99%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.88%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	5.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.97%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.97%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014301	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1	Environmental	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025552	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025556	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025559	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_110333292	3300000363	Soil	MSSRRDVDVAGVLVQAHHVPDLITRLHRAGYPFVADKVARALGTRTIHVAFGSAEREALVRAVADEPPQFSELYRVLLREIQDLRAADL*
JGI10214J12806_108633142	3300000891	Soil	VAGVTVEARHLPELITRLRASGYPFVAEKVERALGLRTVHVGFDAAEREAIVRAVDDKPPHFSELYRVLRAEIRYKRQGES*
JGI11615J12901_112176222	3300000953	Soil	MSWRRDVDVAGVTLEARHIPELITRLRLAGHPFVAEKVERALGLRTVHVTFDAAEREAIVDVVADRSREFSELYRVLRAEIRRRPEPS*
JGI10216J12902_1014184762	3300000956	Soil	VWWRRDVNVAGVTVSARHVPELITRLRAAGYPFVAEKVERALGLRTVHVGFDAAEREAIVRAVDDKPPYFSELYRVLRAEIQRKRQGEP*
Ga0055471_100016453	3300003987	Natural And Restored Wetlands	MSLRRDIDLAGVPVQAHHVPELISRLRRRGYPSVAHKVERALSSRTVHVAFNAAEREAIVRAVADRPRQFSELYDVLRGEIKRRRTQSRHESF*
Ga0055465_100056234	3300004013	Natural And Restored Wetlands	LAGVPVQAHHVPELISRLRRRGYPSVAHKVERALSSRTVHVAFNAAEREAIVRAVADRPRQFSELYDVLRGEIKRRRTQSRHESF*
Ga0062593_1002842742	3300004114	Soil	MSLRRDVDVAGVPIHAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTRHESF*
Ga0062593_1035536521	3300004114	Soil	LVLSRRRPRKTREWVFSVADLARVHRAALDTVGLGAPRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR*
Ga0062589_1000327443	3300004156	Soil	ARVHRAALDTVGLGAPRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR*
Ga0062590_1001181521	3300004157	Soil	MRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR*
Ga0062591_1000444733	3300004643	Soil	GLGAPRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR*
Ga0070683_1000241684	3300005329	Corn Rhizosphere	MSLRRDVDVAGVRLQARHVPELIGRLRRRGYPSVAHKLERALSTRTVRVEFNAAEREVIARAVADRPARFSELYEVLIGEIKRRRAESR*
Ga0070683_1003298513	3300005329	Corn Rhizosphere	MSLRRDVSVAGVRIDARHAPELIARLRRKGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHRAPQFSELYDVLRGELKRQRAERH*
Ga0068869_1001102103	3300005334	Miscanthus Rhizosphere	VSWRRDVNVAGVTVEARHLPELITRLRASGYPFVAEKVERALGLRTVHVGFDAAEREAIVRAVDDKPPHFSELYRVLRAEIRYKRQGES*
Ga0070660_1000687283	3300005339	Corn Rhizosphere	MRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNAAEREVIARAVADSPARFSELYEVLIGEIKRRRARSR*
Ga0070689_1013260442	3300005340	Switchgrass Rhizosphere	MSLRRDVSVAGVRIDARHAPELIARLRRKGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHRAPQFSELYDALRGELKRQRAERH*
Ga0070691_101091161	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MSLRRDVDVAGVPIHAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQT
Ga0070692_102481232	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	RMSLRRDVDVAGVPIQAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTRHESF*
Ga0070692_103662121	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNAAEREVIARAVADRPARFSELYEVLIGEIKRRRAESR*
Ga0070674_1012914181	3300005356	Miscanthus Rhizosphere	MSLRRDVDVAGVPIQAHHVPELIGRLRRRGYPTVAHKVERALASRTIHVAFNPAEREAIVRAVVDRPRQFSELYDVLREEVKRRRTQTRHESF*
Ga0070694_1007105072	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MSLRRDVDVAGVPIQAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTRHESF*
Ga0070663_1010211091	3300005455	Corn Rhizosphere	SLRRDVDVAGVPIHAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTRHESF*
Ga0070678_1004755162	3300005456	Miscanthus Rhizosphere	MSLRRDVSVAGVRIDARLAPQLIARLRRKGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHRAPQFSELYDVLRGELKRQRAERH*
Ga0068867_1001399622	3300005459	Miscanthus Rhizosphere	MSLRRDVDVAGVPIHAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVVDRPRQFSELYDVLREEVKRRRTQTRHESF*
Ga0070685_104096061	3300005466	Switchgrass Rhizosphere	MRDQLSMSLRRDVDVAGVPEQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR*
Ga0070679_1001999933	3300005530	Corn Rhizosphere	MSLRRDVDVAGVRLQARHVPELIGRLRRRGYPSVAHKLERALSTRTVRVEFNAAEREVIARAVADSPARFSELYEVLIGEIKRRRAESR*
Ga0070684_1002751562	3300005535	Corn Rhizosphere	VSWRRDVNVAGVTVEARHLPELITRLRASGYPFVAEKVERALGLRTVHVAFDAAEREAIVHAVYDKPPHFSELYRALRAEIQRNRQGES*
Ga0070672_1015757941	3300005543	Miscanthus Rhizosphere	SLRRDVSVAGVRVDARLAPELIARLRRQGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHRAPQFSELYDVLRGELKRQRAERH*
Ga0068857_1019014162	3300005577	Corn Rhizosphere	MSLRRDVDVAGVRLQARHVPELIGQLRRRGYPSVAHKLERALSTRTVRVEFNAAEREVIARAVADRPARFSELYEVLI
Ga0068854_1003602562	3300005578	Corn Rhizosphere	MRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGE
Ga0070702_1007906442	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VCRGKPFAMSLRRDVIVAGVRIDARLAPELIARLRRKGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHRAPQFSELYDVLRGELKRQRAERH*
Ga0068852_1011415051	3300005616	Corn Rhizosphere	SVARTRYPPRMSLRRDVDVAGVPIQAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTRHESF*
Ga0068852_1014224041	3300005616	Corn Rhizosphere	VRLQARHVPELIGRLRRRGYPSVAHKLERALSTRTVRVEFNAAEREVIARAVADRPARFSELYEVLIGEIKRRRAESR*
Ga0068859_1005990122	3300005617	Switchgrass Rhizosphere	VADLARVHRAALDTVGLGAPRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRAR
Ga0081455_100357994	3300005937	Tabebuia Heterophylla Rhizosphere	VSWRRDVDVAGVPVAAHDVPELIRRLRERGAPHVAVKVERALGTRTVHVVFSEAEREAILRAVDDRPREFSELYAALVHELERRRKRAD*
Ga0081455_100981732	3300005937	Tabebuia Heterophylla Rhizosphere	LPLSRDIDVAGVRVEARHIPELIKRLSRVGYPSVANKVERALATRTIRVEFNAAERAVIARAVVDRPPQFSELYRALKDENKRRRSEGLT*
Ga0081455_106371832	3300005937	Tabebuia Heterophylla Rhizosphere	MSLRRDVDVAGVPVLAQHMPELIDRVRRRGYPSVAHKLERALSARTVQVTFNDAEREVIVRALADRPRQFSELHEVLYAEVKRKRRRL*
Ga0068871_1019207072	3300006358	Miscanthus Rhizosphere	AGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATDREVIARAVADRPERFSELYEVLIGEIKRPRARSR*
Ga0074055_116445092	3300006573	Soil	MSLRRDVSVAGVRVDARLAPELIARLRRKGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHKAPQFSELYDVLRGELKRQRAERH*
Ga0074054_119438682	3300006579	Soil	MLTSSLRRDVSVAGVRVDARLAPELIARLRRRGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHKAPQFSELYDVLRGELKRQRAERH*
Ga0074048_132739532	3300006581	Soil	MFGAVFIGEPFAMSLRRDVSVAGVRVDARLAPELIARLRRKGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHRAPQFSELYDVLRGELKRQRAER
Ga0074057_122065082	3300006605	Soil	MSLRRDVSVAGVRIDARLAPELIARLRRKGYPSVAAKVEQAVGLRTIHVDFNAAEREAIVRSVAHRAPQFSELYDVLRGELKRQRAERH*
Ga0075419_105656702	3300006969	Populus Rhizosphere	MSLRRDVDVAGVPIHAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTRH
Ga0105245_100411771	3300009098	Miscanthus Rhizosphere	AHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTRHESF*
Ga0105245_100709026	3300009098	Miscanthus Rhizosphere	VSWRRDVNVAGVTVEARHLPELITRLRASGYPFVAEKVERALGLRTVHVGFDAAEREAIVRAVDDKPPHFSELYRVLRAEI
Ga0105241_111173001	3300009174	Corn Rhizosphere	VFSVADLARVHRAALDTVGLGAPRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNAAEREVIARAVADRPARFSELYEVLIGEIKRRRARSR*
Ga0105242_109281631	3300009176	Miscanthus Rhizosphere	KTREWVFSVADVARVHRAALDTVGLGAPRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR*
Ga0105237_105545152	3300009545	Corn Rhizosphere	VFSVADLARVHRAALDTVGLGAPRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR*
Ga0105238_113881991	3300009551	Corn Rhizosphere	MSLRRDVSVAGVRIDARHAPELIARLRRKGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHRAPQFSELYDVLRGELKRQRPERH*
Ga0134122_105059941	3300010400	Terrestrial Soil	MSLRRDVDVAGVPIQAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVVDRPRQFSELYDVLREEVKRRRTQTRHESF*
Ga0105246_121703541	3300011119	Miscanthus Rhizosphere	VSWRRDVNVAGVTVEARHLPELITRLRASGYPFVAEKVERALGLRTVHVGFDAAEREAIVRAVDDKPPHFSELYR
Ga0157297_100704862	3300012914	Soil	MSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR*
Ga0164241_107350152	3300012943	Soil	MRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPAVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR*
Ga0164300_106179281	3300012951	Soil	MVGRCTSGATAPVTHPPDVGVWSDVCRGKPFAMSLRRDVMVAGVRIDARLAPELIARLRRKGYPSVAAKVEQAVGLRTIHVDFNAAEREAIVRSVAHRAPQFSELYDVLRGELKRQRAERH*
Ga0164299_103812782	3300012958	Soil	VFTVADLARVHRVALDTVGLAAPRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR*
Ga0164301_109385201	3300012960	Soil	VLDRIDPAQVAEDPVPDVHVWTPCLQGKPIVMSLRRDVSVAGVRIDARLAPELIARLRRKGYPSVAAKVEQAVGLRTIHVDFNAAEREAIVRSVAQRAPQFSELYDVLRGELKRQRAERH
Ga0164309_117134881	3300012984	Soil	MFEPDVCRGKPIVMSLRRDVSVAGVRIDARLAPELIARLRRKGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAQRAPQFSELYDVLRGELKRQRAERH*
Ga0164308_100248703	3300012985	Soil	VFSVADLARVHRAALDTVGLAAPRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR*
Ga0164306_108757382	3300012988	Soil	VFSVADLARVHRVALDTVGLAAPRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR*
Ga0164305_109505421	3300012989	Soil	MSLRRDVSVAGVRIDARLAPELIARLRRKGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHRAPQFSELYDVLRGE
Ga0157370_108277303	3300013104	Corn Rhizosphere	FSVADVARVHRAALDTVGLGAPRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALYTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR*
Ga0157370_113748291	3300013104	Corn Rhizosphere	MSLRRDVDVAGVRLQARHVPELIGRLRRRGYPSVAHKLERALSTRTVRVEFNAAEREVIARAVADRPARFSELYEVLIGEINRRRA
Ga0157372_123696982	3300013307	Corn Rhizosphere	MSLRRDVDVAGVRLQARHVPELIGRLRRRGYPSVAHKLERALSTRTVRVEFNAAEREVIARAVADRPARFSELYEVLIGEIKRRRARSR*
Ga0157375_119334621	3300013308	Miscanthus Rhizosphere	MSLRRDVIVAGVRIDARHAPELIARLRRKGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHRAPQFSELYDV
Ga0075323_10038432	3300014301	Natural And Restored Wetlands	MSWRRDVDVAGVPVEAHHVPELITRLRMAGYPFVANKVERALGTRTVHVAFGATEREAIVRVIADRPTQFSELYAVLLRDLERRRAGG*
Ga0075322_10086545	3300014311	Natural And Restored Wetlands	MSWRRDVDVAGVPVEAHHVPELITRLRMAGYPFVANKVERALGTRTVHVAFGATEREAIVRVIADKPTQFSELYAVLLRDLERRRAGG*
Ga0157380_103729462	3300014326	Switchgrass Rhizosphere	MSLRRDVSVAGVRVDARHAPELIARLRRKDYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHRAPQFSELYDVLRGELKRQRAERH*
Ga0157377_101227732	3300014745	Miscanthus Rhizosphere	MSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNAAEREVIARAVADRPARFSELYEVLIGEIKRRRAESR*
Ga0132255_1056659231	3300015374	Arabidopsis Rhizosphere	VAGVRIDPRLAPELIARLRRKGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSLAHRAPQFSELYDVLRGELKRQRAERH*
Ga0163161_107087661	3300017792	Switchgrass Rhizosphere	MSLRRDVMVAGVRIDARQAPELIARLRRKGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHRAPQFSELYDVLRGELKRQRDERH
Ga0206353_105902081	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	DVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR
Ga0154015_10658641	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	PRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR
Ga0224712_100498452	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	VADLARVHRAALDTVGLGAPRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR
Ga0247786_10257343	3300022883	Soil	VPIHAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTRHESF
Ga0247786_10560581	3300022883	Soil	REWVFSVADLARVHRAALDTVGLGAPRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR
Ga0247745_10390001	3300022898	Soil	PCLRREGTREPLNVSWRRDVNVAGVTVEARHLPELITRLRASGYPFVAEKVERALGLRTVHVGFDAAEREAIVRAVDDKPPHFSELYRVLRAEIRYKRQGES
Ga0247788_10888251	3300022901	Soil	MSLRRDVDVAGVPIQAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTRHESF
Ga0247790_100183021	3300022915	Soil	MSLRRDVDVAGVPIHAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTRHESF
Ga0247754_11113801	3300023102	Soil	SGQVARRSRCPCLSVARTRYPPRMSLRRDVDVAGVPIHAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTRHESF
Ga0247794_100247574	3300024055	Soil	MRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR
Ga0210142_100001546	3300025552	Natural And Restored Wetlands	MSWRRDVDVAGVPVEAHHVPELITRLRMAGYPFVANKVERALGTRTVHVAFGATEREAIVRVIADKPTQFSELYAVLLRDLERRRAGG
Ga0210120_10031226	3300025556	Natural And Restored Wetlands	MSWRRDVDVAGVPVEAHHVPELITRLRMAGFPFVANKVERALGTRTVHVAFGATEREAIVRVIADKPTQFSELYAVLLRDLERRRAGG
Ga0210087_10103304	3300025559	Natural And Restored Wetlands	MSWRRDVDVAGVPVGAHHVPELITRLRMAGYPFVANKVERALGTRTVHVAFGATEREAIVRVIADRPTQFSELYAVLLRDLERRRAGG
Ga0210076_10252883	3300025567	Natural And Restored Wetlands	RNRTRRGLRFARTRYPPPMSLRRDIDLAGVPVQAHHVPELISRLRRRGYPSVAHKVERALSSRTVHVAFNAAEREAIVRAVADRPRQFSELYDVLRGEIKRRRTQSRHESF
Ga0207707_102854661	3300025912	Corn Rhizosphere	MSLRRDVDVAGVRLQARHVPELIGRLRRRGYPSVAHKLERALSTRTVRVEFNAAEREVIARAVADRPARFSELYEVLIGEIKRRRAESR
Ga0207707_108409071	3300025912	Corn Rhizosphere	MSLRRDVDVAGVPIHAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRR
Ga0207660_109995081	3300025917	Corn Rhizosphere	MSLRRDVDVAGVPIHAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTGTN
Ga0207657_103338522	3300025919	Corn Rhizosphere	MSLRRDVDVAGVPIHAHHVPELIGRLRRRGYPTVAHKVERALASRTIHVAFNPAEREAIVRAVVDRPRQFSELYDVLREEVKRRRTQTRHESF
Ga0207652_111629171	3300025921	Corn Rhizosphere	CNMSLRRDVDVAGVRLQARHVPELIGRLRRRGYPSVAHKLERALSTRTVRVEFNAAEREVIARAVADSPARFSELYEVLIGEIKRRRAESR
Ga0207709_114472861	3300025935	Miscanthus Rhizosphere	DVDVAGVRLQARHVPELIGRLRRRGYPSVAHKLERALSTRTVRVEFNAAEREVIARAVADRPARFSELYEVLIGEIKRRRAESR
Ga0207689_104723902	3300025942	Miscanthus Rhizosphere	VSWRRDVNVAGVTVEARHLPELITRLRASGYPFVAEKVERALGLRTVHVGFDAAEREAIVRAVDDKPPHFSELYRVLRAEIRYKRQGES
Ga0207689_109212812	3300025942	Miscanthus Rhizosphere	RALVLSRRRPRKTREWVFSVADLARVHRAALDTVGLGAPRMRDQLSMSLRRDVDVAGVPVQAQHVPELIGRLRKRGYPSVAHKLERALSTRTVRVEFNATEREVIARAVADRPERFSELYEVLIGEIKRRRARSR
Ga0207689_110412552	3300025942	Miscanthus Rhizosphere	MSLRRDVDVAGVPIHAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVVDRPRQFSELYDVLREEVKRRRTQTRHESF
Ga0207639_117831281	3300026041	Corn Rhizosphere	SVARTRYPPRMSLRRDVDVAGVPIQAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTRHESF
Ga0207648_104207373	3300026089	Miscanthus Rhizosphere	PDVGVWSDVCRGKPFAMSLRRDVMVAGVRVDARLAPELIARLRRKGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHRAPQFSELYDVLRGELKRQRAERH
Ga0207676_123044881	3300026095	Switchgrass Rhizosphere	MSLRRDVSVAGVRIDARHAPELIARLRRKGYPSVAAKVERAVGLRTIPVDFNAAEREAIVRSVAHRAPQFSELYDVLRGELKRQRDERH
Ga0207698_102358621	3300026142	Corn Rhizosphere	VAGVPIHAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTRHESF
Ga0247822_117876001	3300028592	Soil	MSLRRDVDVAGVPIQAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELY
Ga0307503_107696841	3300028802	Soil	MSLRRDVSVAGVRIDARLAPELIARLRRKGYPSVAAKVERAVSLRTIPVDFNAAEREAIVRSVAHRAPQFSEL
Ga0310886_103800851	3300031562	Soil	YPPRMSLRRDVDVAGVPIHAHHVPELIGRLRRRGYPTVAHKVERALSSRTIHVAFNPAEREAIVRAVADRPRQFSELYDVLREEVKRRRTQTRHESF
Ga0310892_112563881	3300031858	Soil	VSWRRDVNVAGVTVEARHLPELITRLRASGYPFVAEKVERALGLRTVHVGFDAAEREAIVRAVDDKPPHFSELYRV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103332

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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