Metagenome / Metatranscriptome Family F103568

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103568
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	83 residues
Representative Sequence	MGEPPFTPGRDEPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Number of Associated Samples	81
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.24 %
% of genes near scaffold ends (potentially truncated)	42.57 %
% of genes from short scaffolds (< 2000 bps)	89.11 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.010 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (10.891 % of family members)
Environment Ontology (ENVO)	Unclassified (33.663 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.446 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.05% β-sheet: 0.00% Coil/Unstructured: 63.95%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00156	Pribosyltran	11.88
PF02673	BacA	7.92
PF11057	Cortexin	0.99
PF02880	PGM_PMM_III	0.99
PF03476	MOSC_N	0.99
PF07366	SnoaL	0.99
PF03620	IBV_3C	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1968	Undecaprenyl pyrophosphate phosphatase	Lipid transport and metabolism [I]	7.92
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.99
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.99
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	95.05 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	95.05 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	38.61 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.97 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	38.61 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.98 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	38.61 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.98 %
Unclassified	root	N/A	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2001200001\|2001316254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1106	Open in IMG/M
3300000043\|ARcpr5yngRDRAFT_c014506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	661	Open in IMG/M
3300000881\|JGI10215J12807_1328521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	709	Open in IMG/M
3300000956\|JGI10216J12902_105198413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528	Open in IMG/M
3300000956\|JGI10216J12902_108553492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	684	Open in IMG/M
3300003987\|Ga0055471_10017724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1663	Open in IMG/M
3300003990\|Ga0055455_10175855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	663	Open in IMG/M
3300003996\|Ga0055467_10209543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	604	Open in IMG/M
3300004114\|Ga0062593_100883749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	901	Open in IMG/M
3300004114\|Ga0062593_101130876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	816	Open in IMG/M
3300004114\|Ga0062593_102740697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300004156\|Ga0062589_102171352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300004463\|Ga0063356_101353001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1045	Open in IMG/M
3300004463\|Ga0063356_103018159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	725	Open in IMG/M
3300004643\|Ga0062591_100741141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	896	Open in IMG/M
3300004643\|Ga0062591_100873483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	840	Open in IMG/M
3300004799\|Ga0058863_11695111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	592	Open in IMG/M
3300005093\|Ga0062594_102481673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	569	Open in IMG/M
3300005093\|Ga0062594_102490704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300005327\|Ga0070658_10440461	All Organisms → cellular organisms → Bacteria	1122	Open in IMG/M
3300005328\|Ga0070676_11219485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
3300005329\|Ga0070683_100325519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1463	Open in IMG/M
3300005329\|Ga0070683_100730365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	949	Open in IMG/M
3300005329\|Ga0070683_102379035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300005332\|Ga0066388_100034305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4859	Open in IMG/M
3300005332\|Ga0066388_100253916	All Organisms → cellular organisms → Bacteria	2398	Open in IMG/M
3300005334\|Ga0068869_100979924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	735	Open in IMG/M
3300005366\|Ga0070659_100548199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	990	Open in IMG/M
3300005441\|Ga0070700_100764569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	774	Open in IMG/M
3300005444\|Ga0070694_100432790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1035	Open in IMG/M
3300005455\|Ga0070663_100747085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	835	Open in IMG/M
3300005456\|Ga0070678_100983410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	775	Open in IMG/M
3300005518\|Ga0070699_101898306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	545	Open in IMG/M
3300005535\|Ga0070684_101260274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	696	Open in IMG/M
3300005539\|Ga0068853_100238566	All Organisms → cellular organisms → Bacteria	1666	Open in IMG/M
3300005546\|Ga0070696_102003625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	503	Open in IMG/M
3300005614\|Ga0068856_102612286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300005840\|Ga0068870_10918078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	620	Open in IMG/M
3300005937\|Ga0081455_10106203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2242	Open in IMG/M
3300005937\|Ga0081455_10111237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2176	Open in IMG/M
3300006048\|Ga0075363_100615899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	651	Open in IMG/M
3300006051\|Ga0075364_10384445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	957	Open in IMG/M
3300006178\|Ga0075367_10348257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	935	Open in IMG/M
3300006845\|Ga0075421_100847945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1047	Open in IMG/M
3300006847\|Ga0075431_100789783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	923	Open in IMG/M
3300009094\|Ga0111539_10856885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1057	Open in IMG/M
3300009156\|Ga0111538_13321528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	560	Open in IMG/M
3300011119\|Ga0105246_11077119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	732	Open in IMG/M
3300012905\|Ga0157296_10365643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	528	Open in IMG/M
3300012943\|Ga0164241_10055814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2885	Open in IMG/M
3300012989\|Ga0164305_11174513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	664	Open in IMG/M
3300012989\|Ga0164305_11432057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	610	Open in IMG/M
3300013102\|Ga0157371_10182030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1503	Open in IMG/M
3300013102\|Ga0157371_11017453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	633	Open in IMG/M
3300013307\|Ga0157372_10020565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7122	Open in IMG/M
3300013307\|Ga0157372_11744709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	716	Open in IMG/M
3300015200\|Ga0173480_11264626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300015372\|Ga0132256_103521177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300019356\|Ga0173481_10011496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2515	Open in IMG/M
3300020082\|Ga0206353_11654439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
3300022883\|Ga0247786_1037638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	957	Open in IMG/M
3300022892\|Ga0247753_1017422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	784	Open in IMG/M
3300022893\|Ga0247787_1077139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300022901\|Ga0247788_1033552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	928	Open in IMG/M
3300022915\|Ga0247790_10013167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1710	Open in IMG/M
3300023057\|Ga0247797_1070871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300023102\|Ga0247754_1027652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1265	Open in IMG/M
3300023266\|Ga0247789_1061802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	704	Open in IMG/M
3300025559\|Ga0210087_1014519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1632	Open in IMG/M
3300025899\|Ga0207642_11117948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	510	Open in IMG/M
3300025908\|Ga0207643_10608248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	704	Open in IMG/M
3300025912\|Ga0207707_10092653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2640	Open in IMG/M
3300025914\|Ga0207671_11506827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	519	Open in IMG/M
3300025917\|Ga0207660_10022525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4245	Open in IMG/M
3300025920\|Ga0207649_11598432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	516	Open in IMG/M
3300025932\|Ga0207690_10409279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1083	Open in IMG/M
3300025935\|Ga0207709_10861148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	735	Open in IMG/M
3300025942\|Ga0207689_10445076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1082	Open in IMG/M
3300025944\|Ga0207661_10676387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	949	Open in IMG/M
3300025944\|Ga0207661_10980370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	778	Open in IMG/M
3300025944\|Ga0207661_12082529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513	Open in IMG/M
3300025945\|Ga0207679_10203686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1654	Open in IMG/M
3300025945\|Ga0207679_10604022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	989	Open in IMG/M
3300025961\|Ga0207712_10203216	All Organisms → cellular organisms → Bacteria	1572	Open in IMG/M
3300025961\|Ga0207712_11439242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	617	Open in IMG/M
3300026066\|Ga0208290_1026027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	634	Open in IMG/M
3300026067\|Ga0207678_11177192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	679	Open in IMG/M
3300027873\|Ga0209814_10455633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	565	Open in IMG/M
3300028380\|Ga0268265_11256262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	740	Open in IMG/M
3300028587\|Ga0247828_10584388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	678	Open in IMG/M
3300028587\|Ga0247828_10847577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300028597\|Ga0247820_10212602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1236	Open in IMG/M
3300030336\|Ga0247826_10185179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1410	Open in IMG/M
3300030336\|Ga0247826_10740704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	765	Open in IMG/M
3300031716\|Ga0310813_10077037	Not Available	2534	Open in IMG/M
3300031892\|Ga0310893_10322425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	660	Open in IMG/M
3300031944\|Ga0310884_10277914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	925	Open in IMG/M
3300031996\|Ga0308176_10185960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1940	Open in IMG/M
3300033550\|Ga0247829_10033862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3439	Open in IMG/M
3300033550\|Ga0247829_10513223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	993	Open in IMG/M
3300033551\|Ga0247830_11728086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.42%
Host-Associated	Host-Associated	41.58%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.46%
Plants	Host-Associated → Plants	40.59%
Aquatic	Environmental → Aquatic	3.96%
Human	Host-Associated → Human	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.86%
Marine	Environmental → Aquatic → Marine	3.96%
Roots	Host-Associated → Plants → Roots	2.97%
Digestive System	Host-Associated → Human → Digestive System	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.61%
Loam	Environmental → Terrestrial → Soil → Loam	14.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.90%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.96%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.99%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.99%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.99%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	16.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	10.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.92%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.97%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	10.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	8.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.95%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.97%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.99%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2001200001	Soil microbial communities from Waseca County, Minnesota, USA - Sample 10150	Environmental	Open in IMG/M
3300000043	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere	Host-Associated	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003990	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2	Environmental	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300022892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5	Environmental	Open in IMG/M
3300022893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S126-311R-4	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025559	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026066	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2001370100	2001200001	Soil	MGETPFTPGRDRPARGPRPINENMDSAVGQTPATDTRMSSLHLLRDCLVLGRPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK
ARcpr5yngRDRAFT_0145061	3300000043	Arabidopsis Rhizosphere	MGEPPFTPGRDXPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK*
JGI10215J12807_13285211	3300000881	Soil	MGEPPFTPGRDEPSRASWPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEQALGPELT
JGI10216J12902_1051984132	3300000956	Soil	FTPGRDAPRGPSQPIIQNMDSAVGQTPTTDTRTSSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTHDRK*
JGI10216J12902_1085534921	3300000956	Soil	MDDQPFTPGRDAPRGSSQPITQNMDSAVGQTPTTDTRISSLHLLRDCLALGRPVNQRRPAKVRLEEALGPELTRKLLESLDTQNRK*
Ga0055471_100177242	3300003987	Natural And Restored Wetlands	MAEPSFTPGRDDPRRRLRPIIESMDSAVGHTPSADMRTSSLHLLRDCLALGRPVSRRPPAKVRLEEALGPELTRKLLESLDTHDRK*
Ga0055455_101758553	3300003990	Natural And Restored Wetlands	STRPRRRAFTPGRDGRGGCFCPIIGSMDAAVEQTPQTDTHVSSLHLLRDCLAFGKPTSRRRPAKVRLEEALGPELTQKLLESLESSERT*
Ga0055467_102095431	3300003996	Natural And Restored Wetlands	AFTPGRDGRGGCFCPIIGSMDAAVEQTPQTDTHVSSLHLLRDCLAFGKPTSRRRPAKVRLEEALGPELTQKLLESLESSERT*
Ga0062593_1008837492	3300004114	Soil	MGEPPFTPGRDQPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK*
Ga0062593_1011308762	3300004114	Soil	MDEPPFTPGRDAPRRHPLPIIQYMDSAVEQPPTTDMRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTRDRT*
Ga0062593_1027406971	3300004114	Soil	MGETPFTPGRDRPARGPRPINENMDSAVGQTPATDTRMSSLHLLRDCLVLGRPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK*
Ga0062589_1021713521	3300004156	Soil	MGETPFTPGRDDPRRVPRPISVSMDSAVGQTPTTDTQMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRQ*
Ga0063356_1013530012	3300004463	Arabidopsis Thaliana Rhizosphere	MDEPPFTPGRDAPRRHPLPIIQYMDSAVEQPPTTDMRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTHDRR*
Ga0063356_1030181591	3300004463	Arabidopsis Thaliana Rhizosphere	MDDQPFTPGRDAPRGPSQPIIQNMDSAVGQTPTTDTRTSSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTHDRK*
Ga0062591_1007411412	3300004643	Soil	MDERPFTPGRDAPRRHPRPIIQNMDSAVEQPPTTDTRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTHDRR*
Ga0062591_1008734831	3300004643	Soil	MGDTPFTPGRDDPTRVPRPITMNMDSAVGQTPTTDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK*
Ga0058863_116951111	3300004799	Host-Associated	FTPGRDAPRRHPLPIIQYMDSAVEQPPTTDMRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTRDRT*
Ga0062594_1024816732	3300005093	Soil	MGEPPFTPGRDEPSRASWPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK*
Ga0062594_1024907042	3300005093	Soil	MGETPFTPGRDDPRRVPRPISVSMDSAVGQTPTTDTQMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRH*
Ga0070658_104404613	3300005327	Corn Rhizosphere	MDEPPFTPGRDAPRRHPLPIIQYMDSAVEQPPTTDMRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTR
Ga0070676_112194852	3300005328	Miscanthus Rhizosphere	MDERPFTPGRDAPRRHPRPIIHNMDSAVEQPPTTDTRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTHDRR*
Ga0070683_1003255193	3300005329	Corn Rhizosphere	MGEPPFTPGRDEPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK*
Ga0070683_1007303652	3300005329	Corn Rhizosphere	MGDKPFTPGRDDPRRVPRPITVNMDSAVGQTPTTDTRVSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK*
Ga0070683_1023790351	3300005329	Corn Rhizosphere	DDQPFTPGRDAPRGSSQPITQNMDSAVGQTPTTDTRISSLHLLRDCLALGRPVNQRRPAKVRLEEALGPELTRKLLESLDTHDRK*
Ga0066388_1000343057	3300005332	Tropical Forest Soil	MGDPFTPGRDEPWRAPRPITENMDSAVEQTPSTDTRMSSLHLLRDCLALGRPVSRRRPAKVRLEEALGPELTRKLLESLDSHDRK*
Ga0066388_1002539163	3300005332	Tropical Forest Soil	MDERPFTPGRDAPGSPRRPITYTMDSAVGQTPTTDTRMSSLHLLRDCLALGKPTNRRRPAKVRLEEALGPELTRKLLESLDTHDRK*
Ga0068869_1009799242	3300005334	Miscanthus Rhizosphere	MGEPPFTPGRDEPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLAFGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK*
Ga0070659_1005481992	3300005366	Corn Rhizosphere	MGETPFTPGRDDPRRVPRPISVSMDSAVGQTPTTDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK*
Ga0070700_1007645692	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	TPGRDEPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLAFGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK*
Ga0070694_1004327902	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MGEPPFTPGRDEPSRASWPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLAFGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK*
Ga0070663_1007470851	3300005455	Corn Rhizosphere	MGEPPFTPGRDEPSRASWPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGP
Ga0070678_1009834102	3300005456	Miscanthus Rhizosphere	MDERPFTPGRDAPRRHPRPIIHNMDSAVEQPPTTDMRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTRDRT*
Ga0070699_1018983061	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MGDTPFTPGRDDPRRVPRPISVSMDSAVGQTPTTDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK*
Ga0070684_1012602741	3300005535	Corn Rhizosphere	MGDTPFTPGRDDPTRVLRPITMNMDSAVGQTPTTDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK*
Ga0068853_1002385661	3300005539	Corn Rhizosphere	MGEPPFTPGRDEPSRASWPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTR
Ga0070696_1020036252	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MDEPPFTPGRDAPRRHPLPIIQYMDSAVEQPPTTDTRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTRDRT*
Ga0068856_1026122862	3300005614	Corn Rhizosphere	MDERPFTPGRDAPRRHPRPIIHNMDSAVEQPPTTDTRISSLHLLRDCLALGRPANRRRPAKVRLEEALG
Ga0068870_109180781	3300005840	Miscanthus Rhizosphere	GRDAPRGPSQPITQNMDSAVGQTPTTDTRTSSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTHDRK*
Ga0081455_101062032	3300005937	Tabebuia Heterophylla Rhizosphere	MGEPPFTPGRDAWPRRRRPITEIMDSAVGHTPTADTRMSSLHLLRDCLALGRPTSRRRPAKVRLEEALGPELTRKLLESLDTQDRK*
Ga0081455_101112373	3300005937	Tabebuia Heterophylla Rhizosphere	MGEPPFTPGRDEPTRAPRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGRPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK*
Ga0075363_1006158991	3300006048	Populus Endosphere	MGDTPFTPGRDDPRRVPRPITLNMDSAVGQTPATDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLD
Ga0075364_103844452	3300006051	Populus Endosphere	MGDTPFTPGRDDPRRVPRPITLNMDSAVGQTPATDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDPK*
Ga0075367_103482572	3300006178	Populus Endosphere	MGDTPFTPGRDDPRRVPRPITLNMDSAVGQTPTTDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDPK*
Ga0075421_1008479451	3300006845	Populus Rhizosphere	PFTPGRDEPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK*
Ga0075431_1007897832	3300006847	Populus Rhizosphere	MGEPPFTPGRDQPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPE
Ga0111539_108568852	3300009094	Populus Rhizosphere	MGDTPFTPGRDDPRRVPRPITVNMDSAVGQTPTTDTRVSSLHLLRDCLALARPTTRRRPARVRLEEALGPELTRKLLESLDTPDRK*
Ga0111538_133215281	3300009156	Populus Rhizosphere	PPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK*
Ga0105246_110771192	3300011119	Miscanthus Rhizosphere	MGDTPFTPGRDDPRRVPRPISVSMDSAVGQTPTTDTQMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRQ*
Ga0157296_103656431	3300012905	Soil	MGEPPFTPGRDEPPRASWPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKL
Ga0164241_100558144	3300012943	Soil	MAEPLFTPGRDDPWRRLRPIIESMDSAVGHTPSADMRTSSLHLLRDCLALGRPMSRRPPAKVRLEEALGPELTRKLLESLDTHDRK*
Ga0164305_111745132	3300012989	Soil	MDDQPFTPGRDVPRGPLQPIIQNMDSAVGQTPTTDTRTSSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTHDRK*
Ga0164305_114320572	3300012989	Soil	DAPRRHPLPIIQYMDSAVEQPPTTDMRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTRDRT*
Ga0157371_101820302	3300013102	Corn Rhizosphere	MGEPPFTPGRDQPPRVSRPIIQDMDSAVGQTTSTDTRTSSLHLLRDCLAFGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK*
Ga0157371_110174532	3300013102	Corn Rhizosphere	MDEPPFTPGRDAPRRHPLPIIQYMDSAVEQPPTTEMRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTRDRT*
Ga0157372_100205659	3300013307	Corn Rhizosphere	MGDPPFTPGRDEPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLAFGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK*
Ga0157372_117447091	3300013307	Corn Rhizosphere	PPSTRRGCCSMGDTPFTPGRDDPTRVPRPITMNMDSAVGQTPTTDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK*
Ga0173480_112646261	3300015200	Soil	PHSTRGGFPSMDEPPFTPGRDAPRRHPLPIIQYMDSAVEQPPTTDMRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTHDRR*
Ga0132256_1035211771	3300015372	Arabidopsis Rhizosphere	PGRDDPTRGPRPITMNMDSAVGQTPTTDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK*
Ga0173481_100114962	3300019356	Soil	MGDTPFTPGRDDPRRVLRPISVNMDSAVGQTPTTDTRMSSLHLLRDCLVLGRPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK
Ga0206353_116544392	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MDEPPFTPGRDAPRRHPLPIIQYMDSAVEQPPTTDMRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTRDRT
Ga0247786_10376382	3300022883	Soil	MGDTPFTPGRDDPTRVPRPITMNMDSAVGQTPTTDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK
Ga0247753_10174221	3300022892	Soil	MGEPPFTPGRDEPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Ga0247787_10771392	3300022893	Soil	MGETPFTPGRDDPRRVPRPISVSMDSAVGQTPTTDTQMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLE
Ga0247788_10335521	3300022901	Soil	MGEPPFTPGRDQPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESL
Ga0247790_100131672	3300022915	Soil	MGEPPFTPGRDEPSRASWPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Ga0247797_10708711	3300023057	Soil	MGETPFTPGRDDPRRVPRPISVSMDSAVGQTPTTDTQMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESL
Ga0247754_10276523	3300023102	Soil	PSRASWPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Ga0247789_10618022	3300023266	Soil	MGEPPFTPGRDKPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Ga0210087_10145191	3300025559	Natural And Restored Wetlands	MAEPSFTPGRDDPRRRLRPIIESMDSAVGHTPSADMRTSSLHLLRDCLALGRPVSRRPPAKVRLEEALGPELTRKLLESLDTHDRK
Ga0207642_111179482	3300025899	Miscanthus Rhizosphere	MDERPFTPGRDAPRRHPRPIIHNMDSAVEQPPTTDTRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLES
Ga0207643_106082482	3300025908	Miscanthus Rhizosphere	MDEPPFTPGRDAPRRHPLPIIQYMDSAVEQPPTTDMRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTHDRR
Ga0207707_100926534	3300025912	Corn Rhizosphere	MGEPPFTPGRDQPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Ga0207671_115068272	3300025914	Corn Rhizosphere	MGEPPFTPGRDEPSRASWPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGKPEHRRAPAKVRLEETLGPELTRKLLIRLAGTRD
Ga0207660_100225252	3300025917	Corn Rhizosphere	MDERPFTPGRDAPRRHPRPIIQNMDSAVEQPPTTDTRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTHDRR
Ga0207649_115984322	3300025920	Corn Rhizosphere	MGEPPFTPGRDQPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKL
Ga0207690_104092792	3300025932	Corn Rhizosphere	MGETPFTPGRDDPRRVPRPISVSMDSAVGQTPTTDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK
Ga0207709_108611481	3300025935	Miscanthus Rhizosphere	PRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Ga0207689_104450763	3300025942	Miscanthus Rhizosphere	MGEPPFTPGRDEPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLAFGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Ga0207661_106763872	3300025944	Corn Rhizosphere	MGDKPFTPGRDDPRRVPRPITVNMDSAVGQTPTTDTRVSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK
Ga0207661_109803702	3300025944	Corn Rhizosphere	MDERPFTPGRDAPRRHPRPIIHNMDSAVEQPPTTDTRISSLHLLRDCLALGRPANRRRPAKVRLEEAL
Ga0207661_120825292	3300025944	Corn Rhizosphere	QPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Ga0207679_102036861	3300025945	Corn Rhizosphere	MGDTPFTPGRDDPTRVPRPITMNMDSAVGQTPTTDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLE
Ga0207679_106040222	3300025945	Corn Rhizosphere	MGEPPFTPGRDEPSRASWPIIQGMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Ga0207712_102032161	3300025961	Switchgrass Rhizosphere	MGDTPFTPGRDDPTRVPRPITMNMDSAVGQTPTTDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLES
Ga0207712_114392421	3300025961	Switchgrass Rhizosphere	EPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLAFGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Ga0208290_10260271	3300026066	Natural And Restored Wetlands	AEPSFTPGRDDPRRRLRPIIESMDSAVGHTPSADMRTSSLHLLRDCLALGRPVSRRPPAKVRLEEALGPELTRKLLESLDTHDRK
Ga0207678_111771922	3300026067	Corn Rhizosphere	MDERPFTPGRDAPRRHPRPIIHNMDSAVEQPPTTDTRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTRDRT
Ga0209814_104556332	3300027873	Populus Rhizosphere	MGEPPFTPGRDQPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLE
Ga0268265_112562622	3300028380	Switchgrass Rhizosphere	MGDTPFTPGRDDPTRVPRPITMNMDSAVGQTPTTDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTSDRK
Ga0247828_105843882	3300028587	Soil	MGDNPFTPGRDDPRRVPRPITVNMDSAVGQTPTTDTRVSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK
Ga0247828_108475772	3300028587	Soil	MDDQPFTPGRDAPRGPSQPIIQNMDSAVGQTPTTDTRTSSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDTHDRK
Ga0247820_102126021	3300028597	Soil	DEPSRASWPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Ga0247826_101851793	3300030336	Soil	MGDTPFTPGRDDRARGLRPINVNMDSAVGQTPATDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDT
Ga0247826_107407041	3300030336	Soil	FTPGRDQPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Ga0310813_100770372	3300031716	Soil	MDEPPFTPGRDAPRRHPLPIIQYMDSAVEQPPTTDMRISSLHLLRDCLALGRPANRRRPAKVRLEEALGPELTRKLLESLDARDRT
Ga0310893_103224252	3300031892	Soil	CSMGEPPFTPGRDEPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Ga0310884_102779141	3300031944	Soil	MGEPPFTPGRDEPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALG
Ga0308176_101859603	3300031996	Soil	MAEAPFTPGRDDPWRRLRPITESMDSAVGHTPTADMRTSSLHLLRDCLALGRPMSRRPPAKVRLEEALGPELTRKLLESLDTRHRK
Ga0247829_100338621	3300033550	Soil	GEPPFTPGRDQPPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK
Ga0247829_105132231	3300033550	Soil	MGDTPFTPGRDDRARGLRPINVNMDSAVGQTPATDTRMSSLHLLRDCLALARPTTRRRPAKVRLEEALGPELTRKLLESLDTPDRK
Ga0247830_117280862	3300033551	Soil	PPRVSRPIIQDMDSAVGQTPSTDTRTSSLHLLRDCLALGMPMSRRRPAKVRLEEALGPELTRKLLESLDTRDRK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103568

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences