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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F103591 |
| Family Type | Metagenome |
| Number of Sequences | 101 |
| Average Sequence Length | 55 residues |
| Representative Sequence | QLEVPAGAEICVSNEWEIRAETYAQFARNGAPWPDRDWEVDVDTFCFYKN |
| Number of Associated Samples | 84 |
| Number of Associated Scaffolds | 101 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 100.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 82 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.42 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (98.020 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.782 % of family members) |
| Environment Ontology (ENVO) | Unclassified (33.663 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (65.347 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 25.64% Coil/Unstructured: 74.36% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.42 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 101 Family Scaffolds |
|---|---|---|
| PF01075 | Glyco_transf_9 | 3.96 |
| PF07690 | MFS_1 | 3.96 |
| PF13701 | DDE_Tnp_1_4 | 2.97 |
| PF00950 | ABC-3 | 2.97 |
| PF03401 | TctC | 1.98 |
| PF08546 | ApbA_C | 1.98 |
| PF00903 | Glyoxalase | 1.98 |
| PF09361 | Phasin_2 | 1.98 |
| PF13795 | HupE_UreJ_2 | 1.98 |
| PF01977 | UbiD | 1.98 |
| PF09587 | PGA_cap | 1.98 |
| PF13458 | Peripla_BP_6 | 0.99 |
| PF01436 | NHL | 0.99 |
| PF05378 | Hydant_A_N | 0.99 |
| PF00140 | Sigma70_r1_2 | 0.99 |
| PF01724 | DUF29 | 0.99 |
| PF03572 | Peptidase_S41 | 0.99 |
| PF06042 | NTP_transf_6 | 0.99 |
| PF13570 | PQQ_3 | 0.99 |
| PF01494 | FAD_binding_3 | 0.99 |
| PF01008 | IF-2B | 0.99 |
| PF02223 | Thymidylate_kin | 0.99 |
| PF00330 | Aconitase | 0.99 |
| PF13649 | Methyltransf_25 | 0.99 |
| PF12840 | HTH_20 | 0.99 |
| PF00753 | Lactamase_B | 0.99 |
| PF06155 | GBBH-like_N | 0.99 |
| COG ID | Name | Functional Category | % Frequency in 101 Family Scaffolds |
|---|---|---|---|
| COG0859 | ADP-heptose:LPS heptosyltransferase | Cell wall/membrane/envelope biogenesis [M] | 3.96 |
| COG0609 | ABC-type Fe3+-siderophore transport system, permease component | Inorganic ion transport and metabolism [P] | 2.97 |
| COG1108 | ABC-type Mn2+/Zn2+ transport system, permease component | Inorganic ion transport and metabolism [P] | 2.97 |
| COG4606 | ABC-type enterochelin transport system, permease component | Inorganic ion transport and metabolism [P] | 2.97 |
| COG0043 | 3-polyprenyl-4-hydroxybenzoate decarboxylase | Coenzyme transport and metabolism [H] | 1.98 |
| COG0145 | N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit | Amino acid transport and metabolism [E] | 1.98 |
| COG0654 | 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases | Energy production and conversion [C] | 1.98 |
| COG1893 | Ketopantoate reductase | Coenzyme transport and metabolism [H] | 1.98 |
| COG3181 | Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC | Energy production and conversion [C] | 1.98 |
| COG0125 | Thymidylate kinase | Nucleotide transport and metabolism [F] | 0.99 |
| COG0182 | 5-methylthioribose/5-deoxyribulose 1-phosphate isomerase (methionine salvage pathway), a paralog of eIF-2B alpha subunit | Amino acid transport and metabolism [E] | 0.99 |
| COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) | Transcription [K] | 0.99 |
| COG0578 | Glycerol-3-phosphate dehydrogenase | Energy production and conversion [C] | 0.99 |
| COG0644 | Dehydrogenase (flavoprotein) | Energy production and conversion [C] | 0.99 |
| COG0665 | Glycine/D-amino acid oxidase (deaminating) | Amino acid transport and metabolism [E] | 0.99 |
| COG0793 | C-terminal processing protease CtpA/Prc, contains a PDZ domain | Posttranslational modification, protein turnover, chaperones [O] | 0.99 |
| COG1184 | Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family | Translation, ribosomal structure and biogenesis [J] | 0.99 |
| COG3536 | Uncharacterized conserved protein, DUF971 family | Function unknown [S] | 0.99 |
| COG3575 | Uncharacterized conserved protein | Function unknown [S] | 0.99 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 98.02 % |
| All Organisms | root | All Organisms | 1.98 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300005531|Ga0070738_10001267 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 53746 | Open in IMG/M |
| 3300027826|Ga0209060_10000342 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 94779 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 21.78% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 14.85% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 13.86% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 12.87% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 6.93% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 4.95% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 2.97% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 2.97% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 1.98% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 1.98% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 1.98% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 0.99% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 0.99% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 0.99% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 0.99% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.99% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.99% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.99% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 0.99% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.99% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.99% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000597 | Forest soil microbial communities from Amazon forest - 2010 replicate II A1 | Environmental | Open in IMG/M |
| 3300001661 | Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly) | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300005531 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 | Environmental | Open in IMG/M |
| 3300005555 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300006050 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014 | Environmental | Open in IMG/M |
| 3300006057 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012 | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300009143 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 | Environmental | Open in IMG/M |
| 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009523 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG | Environmental | Open in IMG/M |
| 3300009764 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40 | Environmental | Open in IMG/M |
| 3300010043 | Tropical forest soil microbial communities from Panama - MetaG Plot_26 | Environmental | Open in IMG/M |
| 3300010046 | Tropical forest soil microbial communities from Panama - MetaG Plot_36 | Environmental | Open in IMG/M |
| 3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
| 3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
| 3300010360 | Tropical forest soil microbial communities from Panama - MetaG Plot_6 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300011120 | Combined assembly of Microbial Forest Soil metaT | Environmental | Open in IMG/M |
| 3300011270 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG | Environmental | Open in IMG/M |
| 3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
| 3300012200 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG | Environmental | Open in IMG/M |
| 3300012211 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG | Environmental | Open in IMG/M |
| 3300012359 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG | Environmental | Open in IMG/M |
| 3300012927 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012944 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
| 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
| 3300015241 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300015245 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300016270 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 | Environmental | Open in IMG/M |
| 3300016422 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 | Environmental | Open in IMG/M |
| 3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
| 3300017966 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG | Environmental | Open in IMG/M |
| 3300017970 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300018042 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10 | Environmental | Open in IMG/M |
| 3300018062 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018433 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116 | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
| 3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
| 3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021433 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300021478 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300024288 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal | Environmental | Open in IMG/M |
| 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026359 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A | Environmental | Open in IMG/M |
| 3300026555 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300027535 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027546 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027669 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027738 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027826 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027854 | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes) | Environmental | Open in IMG/M |
| 3300027875 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027889 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes) | Environmental | Open in IMG/M |
| 3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
| 3300031545 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26 | Environmental | Open in IMG/M |
| 3300031681 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
| 3300031744 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2) | Environmental | Open in IMG/M |
| 3300031751 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24 | Environmental | Open in IMG/M |
| 3300031846 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19 | Environmental | Open in IMG/M |
| 3300031879 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2) | Environmental | Open in IMG/M |
| 3300031890 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) | Environmental | Open in IMG/M |
| 3300031897 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16 | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300031941 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080 | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300032001 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) | Environmental | Open in IMG/M |
| 3300032043 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24 | Environmental | Open in IMG/M |
| 3300032044 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20 | Environmental | Open in IMG/M |
| 3300032060 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| 3300032892 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5 | Environmental | Open in IMG/M |
| 3300033290 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| AF_2010_repII_A1DRAFT_100834122 | 3300000597 | Forest Soil | GGRHTGVSPYGRPVEMAIPAGAEICVSTEWEIRAETYAQFTRNGMPWPDRDWEVDVDTFCFYKN* |
| JGI12053J15887_100599033 | 3300001661 | Forest Soil | NKPVQADVPSGAEICVSLHWEIMADEYAQFTRNGMPWPQRDWDVRVETFCFYRN* |
| JGI12053J15887_100613274 | 3300001661 | Forest Soil | GISPQGTPVQVEVAPGPDICVSNEWEIRAETYAQFSRNGAPWPNPDWEVNVENFCFYKN* |
| Ga0062389_1041633561 | 3300004092 | Bog Forest Soil | SVQIAVPPGSEICVITEWEVRAETYAQFARNGVPWWPDRDWEVDVETFCFFKN* |
| Ga0070738_1000126737 | 3300005531 | Surface Soil | MEVPAGAEICVSNEWEIRAETYAQFSRNGRPWPDRDWEVDVDTFCFYKN* |
| Ga0066692_107136471 | 3300005555 | Soil | SNEWEIRAETYAQFARNGTPWPNRDWEVEVDTFCFYKN* |
| Ga0066903_1013853073 | 3300005764 | Tropical Forest Soil | RHTGVSPQGATVEAEVPAGSEICVGNEEEIGATTYAQFWRNNVPWPDRDWEVNAESFCFYKK* |
| Ga0066903_1021956922 | 3300005764 | Tropical Forest Soil | VPAGAEICVSNEWEIRAETYAQFARNGRPWPNRDWEVDVDTFCFYKN* |
| Ga0066903_1053291021 | 3300005764 | Tropical Forest Soil | RFPNGGRHTGVDPQNMQVQAEVPAGAEICVSLHWEIMAEEYAEFTRDGMPWPKPDWDVKVENFCFYRN* |
| Ga0075028_1001006501 | 3300006050 | Watersheds | PDICVSNEWEIRAETYAQFQRNGAPWPNRDWEVNVENFCFFKN* |
| Ga0075026_1006315441 | 3300006057 | Watersheds | MAVGIPAGKTVQIDVPPGSDICVITEWEVRAETYAQFARNGVPWWPDRDWEVDVDTFCFFRN* |
| Ga0070765_1014441611 | 3300006176 | Soil | HTGVSPYGVTVQLEVPAGSEICVINEWEVRAETYAQFARNGVPWPDRDWEVDVDTFCFYKN* |
| Ga0070765_1018550332 | 3300006176 | Soil | EEIGAQTFAQFWRNGVPWPDRDWEVNAETFCFYKK* |
| Ga0099792_110115912 | 3300009143 | Vadose Zone Soil | RHTGIDPENKPVQADVPSGAEICVSLHWEIMADEYAQFMRNGMPWPKRDWDVRVETFCFYRN* |
| Ga0105248_118656121 | 3300009177 | Switchgrass Rhizosphere | DAYGATLQMEVTSGSDICVINEWEIRAETYAQFSRNGEPWPNPDWEVKVDNFCFYRN* |
| Ga0116221_12592731 | 3300009523 | Peatlands Soil | EICVSNEWEVRAETYAQFARNGVPWPDRDWEVDVDTFCFYKN* |
| Ga0116134_10414061 | 3300009764 | Peatland | WEVQADTYAQFARNGVPWPDRDWEVDVDTFCFYKN* |
| Ga0126380_116742092 | 3300010043 | Tropical Forest Soil | RPKWTECVSFPNGGRHTGVSPYGRPVKLDVPAGAEICVSNEWEIRAETYAQFARNGVPWPDRDWEVEVDTFCFYRN* |
| Ga0126380_119264801 | 3300010043 | Tropical Forest Soil | NEWEIRAETYAQFHRNGVPWPDRDWEVRVETFCFYKND* |
| Ga0126380_120377491 | 3300010043 | Tropical Forest Soil | EWEVRAETYAQFARNGVPWWPDRDWEVDVENFCFFKN* |
| Ga0126384_115158071 | 3300010046 | Tropical Forest Soil | AEICVSNEWEIRAETYAQFARNGVPWPDRDWEVEVDTFCFYRN* |
| Ga0126373_121075112 | 3300010048 | Tropical Forest Soil | YGVPVQLEVPAGAEICVSNEWEIRAETYAQFARNGVPWPNRDWEVDVDTFCFYKN* |
| Ga0126373_132299611 | 3300010048 | Tropical Forest Soil | TGVSPQGTTVEAEVPAGSEICVGNEEEIGATTYAQFWRNNVPWPDHDWEVNAESFCFYKK |
| Ga0126376_111267682 | 3300010359 | Tropical Forest Soil | EWEIRAETYAQFARNGTPWPNRDWEVDVDTFCFYKN* |
| Ga0126372_103348312 | 3300010360 | Tropical Forest Soil | VKLDVPAGAEICVSNEWEIRAETYAQFARNGVPWPDRDWEVEVDTFCFYRN* |
| Ga0126372_104632411 | 3300010360 | Tropical Forest Soil | EIRAETYAQFARNGTPWPNRDWEVDVDTLCFYKN* |
| Ga0126378_123018501 | 3300010361 | Tropical Forest Soil | AGAEICVSNEWEIRAETYAQFARNGAPWPDRDWEVDVDTFCFYKN* |
| Ga0150983_124050521 | 3300011120 | Forest Soil | GVSPQGMPVQMEVASGAEICVGNEEEIGAQTYAQFWRNGVPWPDRDWEVNVETFCFYKN* |
| Ga0137391_111685691 | 3300011270 | Vadose Zone Soil | IQGMPVQMEVAPGPDICVSNQEEIGSGTYARFERNKVPWPNKDWGVSVDNFCFYQK* |
| Ga0137391_115474881 | 3300011270 | Vadose Zone Soil | NEWEIRAETYAQFERSGAPWPDRDWEVNVENFCFFKN* |
| Ga0137393_116051941 | 3300011271 | Vadose Zone Soil | GGRHTGVSPYGVPVQLDVPAGVEICVSNEWEIRAETYAQFARNGTPWPNRDWEVDVDTFCFYKN* |
| Ga0137382_112943771 | 3300012200 | Vadose Zone Soil | APGPDICVSNEWEIRAETYAQFERSGAPWPNRDWEVNVDNFCFYKN* |
| Ga0137377_116925551 | 3300012211 | Vadose Zone Soil | GIDPQNTQVQAEEPAGAEICVSLHWEIVADEYAQFTRDGMPWPKRDWDVRVETFCFYRN* |
| Ga0137385_110695872 | 3300012359 | Vadose Zone Soil | QGAPVQMEVPPGPDICVSNEWEIRAETYAQFERNGAPWPDRDWEVNVETFCFYKR* |
| Ga0137416_103027032 | 3300012927 | Vadose Zone Soil | MPVQMEVAPGPDICVSNQEEIGSGTYARFERNKVPWPNKGWGVSVDNFCFYQK* |
| Ga0137410_119710672 | 3300012944 | Vadose Zone Soil | VSNEWEIRAETYAQFARNGVPWPDRDWEVDVDTFCFYRN* |
| Ga0126369_100310775 | 3300012971 | Tropical Forest Soil | VPAGAEICVSNEWEIRAETYAQFARNGTPWPNRDWEVDVDTFCFYKN* |
| Ga0126369_105634072 | 3300012971 | Tropical Forest Soil | GTPLQLEVPAGAEICVSNEWEIRAETYAQFARNGAPWPDRDWEVDVDTFCFYKN* |
| Ga0126369_112209111 | 3300012971 | Tropical Forest Soil | YGTPLQLEVPAGAEICVSNEWEIRAETYAQFARNGVPWPDRDWEVDVDTFCFYKN* |
| Ga0163162_114178551 | 3300013306 | Switchgrass Rhizosphere | HTGVDAYGATLHMEVTSGSDICVINEWEIRAETYAQFSRNGEPWPNPDWEVKVDNFFFYKN* |
| Ga0137418_110153321 | 3300015241 | Vadose Zone Soil | PQGTAVRADIPPGPEICVGNEEEIGAVTYAQFWRGGVPWPDRDWEVRAEDFCFYKN* |
| Ga0137409_112794971 | 3300015245 | Vadose Zone Soil | EIRAETYAQFERNGRPWPNRDWEVRVEDFCFYNN* |
| Ga0182036_108627201 | 3300016270 | Soil | TCLRPKWTECVSFPNGGRHTGVSPAGKTVEIDVPPGSEICVITEWEVRAETYAQFARNGVPWWPDRDWEVDVESFCFFKN |
| Ga0182039_108218582 | 3300016422 | Soil | CVSNEWEIRAETYAQFARNGRPWPNRDWEVDVDSFCFYKN |
| Ga0187817_105814492 | 3300017955 | Freshwater Sediment | PVEIEVPPGPDICVSTEWEIRAETYALFARGGVPWPNRDWEVDVDTFCFYKN |
| Ga0187776_109663531 | 3300017966 | Tropical Peatland | TGVSPYGVPVQMEVPRGAEICVSNEWEIRAETYAQFSRNGRPWPDRDWEVDVDTFCFYKN |
| Ga0187783_110770222 | 3300017970 | Tropical Peatland | QTCLRPKWTECVSFPNGGRHTGVSPYGVPVQLEVPAGATICVSNEWEIRAETYAQFARNGAPWPNRDWEVDVDTFCFYKN |
| Ga0187871_102189322 | 3300018042 | Peatland | RPKWTQCVSFPNGGRHTGVSPEGAPVQAEVPPGPDICVSNEWEVRAETYAQFSRNGAPWPDRDWEVDVESFCFFKN |
| Ga0187784_106131151 | 3300018062 | Tropical Peatland | ICVSTRWEVRAEDYVQFTRDGQLWPNRDWEVEADTFCFYKN |
| Ga0066667_111336451 | 3300018433 | Grasslands Soil | TGIDPQSMPVQMEVPAGAEICVSLHWEIMADEYAQFTRDGMPWPKRDWDVRVETFCFYRN |
| Ga0210399_107129842 | 3300020581 | Soil | CLRPKWTECVSFPNGGRHSGVSPYGVPVQTEVPAGAEICVSNEWEIRAETYAQFARNGTPWPDRDWEVDVDTFCFYKN |
| Ga0210401_107782272 | 3300020583 | Soil | ALEKEVTPGADICVGNEEEIGAQTFAQFWRDGVPWPDRDWEVNAETFCFYKK |
| Ga0210406_103324722 | 3300021168 | Soil | VTPGPDICVSTEWEIRAETYAQFARGGMPWPNRDWEVRVEDFCFYKN |
| Ga0210400_115266361 | 3300021170 | Soil | VPSGPDICVSTEWEIEAETYALFARDGKPWPNRDWEVRVETFCFYKN |
| Ga0210408_104010962 | 3300021178 | Soil | VSTEWEIRAETYALFARSGQPWPNRDWEVRVEDFCFYKN |
| Ga0210388_106465181 | 3300021181 | Soil | RHTGVSPAGISVQLDVPPGSEICVSNEWEVRAETYAQFSRNGAPWPDRDWEVDVESFCFFKN |
| Ga0210384_115314491 | 3300021432 | Soil | GRHTGISPYGMPVQIEVPPGPDICVSTEWEIEAETYALFARDGKPWPNRDWEVRVETFCFYRN |
| Ga0210391_105167161 | 3300021433 | Soil | ICVSNEWEVRAETYAQFARNGVPWPDRDWEVDVDTFCFYKN |
| Ga0210390_113390362 | 3300021474 | Soil | CVGNEEEIGAQTFAQFWRDGVPWPDRDWEVNAETFCFYKK |
| Ga0210402_114310062 | 3300021478 | Soil | GRHTGVSPAGKSVEIEVPPGSDICVITEWEVRAETYAQFARNGLPWWPDRDWEVDVESFCFFKN |
| Ga0126371_126018681 | 3300021560 | Tropical Forest Soil | CLRPKWTECVSFPNGGRHTGISPAGAPVQLQVPPGAQICVSNEWEIRAETYAQFSRDGRPWPDRDWEVDVDTFCFYKN |
| Ga0126371_136668711 | 3300021560 | Tropical Forest Soil | NGGRHTGISPYGVPVQTEVPAGAQICVSNEWEIRAETYAQFARNGTPWPNRDWEVDVDTFCFYKN |
| Ga0179589_106092291 | 3300024288 | Vadose Zone Soil | VSFPNGGRHTGVSPYGVPVQLEVPAGAEICVSNEWEIRAETYAQFARNGTPWPNRDWEVDVDTFCFYKN |
| Ga0207700_100939034 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | CVGNEEEIGAQTYAQFWRNGVPWPDRDWEVNVETFCFYKN |
| Ga0257163_10532032 | 3300026359 | Soil | CVSNEWEIRAETYAQFARNGTPWPNRDWEVDVDTFCFYKN |
| Ga0179593_12811523 | 3300026555 | Vadose Zone Soil | MEVSPGPDICVSTEWEIRAETYAQFERNGAPWPNRDWEVNVENFCFFRN |
| Ga0209734_11054822 | 3300027535 | Forest Soil | QGATVEIEVPPGPDICVSTEWEIRAETYALFERRGVPWPNRDWEVEVDTFCFYKN |
| Ga0208984_10654022 | 3300027546 | Forest Soil | RHTGISPQGTPVQVEVAPGPDICVSNEWEIRAETYAQFSRNGAPWPNPDWEVNVENFCFYKN |
| Ga0208981_10879831 | 3300027669 | Forest Soil | KWTECVAFPNGGRHTGIDPENKPVQADVPSGAEICVSLHWEIMADEYAQFTRNGMPWPQRDWDVRVETFCFYRN |
| Ga0208989_102175881 | 3300027738 | Forest Soil | GISPQGTPVQVEVAPGPDICVSNEWEIRAETYAQFSRNGAPWPNPDWEVNVENFCFYKN |
| Ga0209060_1000034249 | 3300027826 | Surface Soil | MEVPAGAEICVSNEWEIRAETYAQFSRNGRPWPDRDWEVDVDTFCFYKN |
| Ga0209517_106269902 | 3300027854 | Peatlands Soil | VQLEVPAGAEICVSNEWEVRAETYAQFARNGVPWPDRDWEVDVDTFCFYKN |
| Ga0209283_102344901 | 3300027875 | Vadose Zone Soil | GGRHTGVSPYGAPVQLEVPAGAEICVSNEWEIRAETYAQFARNGTPWPNRDWEVDVDTFCFYKN |
| Ga0209380_100480532 | 3300027889 | Soil | VQLDVPPGSEICVSNEWEVRAETYAQFSRNGAPWPDRDWEVDVESFCFFKN |
| Ga0209380_107934451 | 3300027889 | Soil | VGNEEELGAQTFAQFWRDGVPWPDRDWEVNAETFCFYKK |
| Ga0308309_117899581 | 3300028906 | Soil | CLRPMWTECVSFPNGGRHTGVSPYGVTVQLEVPAGSEICVINEWEVRAETYAQFARNGVPWPDRDWEVDVDTFCFYKN |
| Ga0318541_104648681 | 3300031545 | Soil | VAFPNGGRHTGVSPQGTKLETEVPAGAEICVGNEEEIGATTYAQFWRNKVPWPNRDWEVNAENFCFYKK |
| Ga0318572_108329151 | 3300031681 | Soil | TECVSLPNGGRHTGVSPQGTTVEAEVPAGSEICVGNEEEIGATTYAQFWRNNVPWPDRDWEVNAESFCFYKK |
| Ga0310686_1022217202 | 3300031708 | Soil | GGRHTGVSPTGASVQIDVPPGSDICVITEWEVRAETYAQFARNGVPWWPDRDWEVDVETFCFFKN |
| Ga0306917_113962792 | 3300031719 | Soil | QLEVPAGAEICVSNEWEIRAETYAQFARNGAPWPDRDWEVDVDTFCFYKN |
| Ga0306918_101954373 | 3300031744 | Soil | AGSEICVGNEEEIGATTYAQFWRNNVPWPDRDWEVNAESFCFYKK |
| Ga0306918_112963241 | 3300031744 | Soil | GSEICVGNEEEIGATTYAQFWRNNVPWPDRDWEVNAESFCFYKK |
| Ga0318494_108656111 | 3300031751 | Soil | WTECVSLPNGGRHTGISPQGTTVEAEVPAGSEICVGNEEEIGATTYAQFWRNNVPWPDRDWEVNAESFCFYKK |
| Ga0318512_103210972 | 3300031846 | Soil | SLPNGGRHTGVSPQGTTVEAEVPAGSEICVGNEEEIGATTYAQFWRNNVPWPDRDWEVNAESFCFYKK |
| Ga0306919_110347151 | 3300031879 | Soil | PGPDICVSTEWEIEAETYALFARGGMPWPNRDWEVRVETFCFYRN |
| Ga0306925_116051711 | 3300031890 | Soil | GKPVEIDVPPGPDICVSTEWEIEAETYALFWRDGMPWPNRDWEVRVETFCFYRN |
| Ga0318520_104580231 | 3300031897 | Soil | LRPKWTECVSLPNGGRHTGVSPQGTTVEAEVPAGSEICVGNEEEIGATTYAQFWRNNVPWPDRDWEVNAESFCFYKK |
| Ga0318520_107706132 | 3300031897 | Soil | EEEIGATTYAQFWRNKVPWPNRDWEVNAENFCFYKK |
| Ga0306923_113029832 | 3300031910 | Soil | PQCLWPEWTECVRFPNGGRHTGVDPQNTQVQAEVPAGAEICVSLHWEIMAEEYAEFTRDGMPWPKPDWDVKVETFCFYRN |
| Ga0306923_119212611 | 3300031910 | Soil | TGVSPYGVPVQLEVPAGAEICVSNEWEIRAETYAQFARNGAPWPDRDWEVDVDTFCFYKN |
| Ga0310912_104180181 | 3300031941 | Soil | AEVPAGSEICVGNEEEIGATTYAQFWRNNVPWPDRDWEVNAESFCFYKK |
| Ga0306926_115338821 | 3300031954 | Soil | PADSEICVGNEEEIGATTYAQFWRNKVPWPNRDWEVNAENFCFYKK |
| Ga0306926_116785342 | 3300031954 | Soil | PECLRPKWTECVSLPNGGRHTGISPQGTTVEAEVPAGSEICVGNEEEIGATTYAQFWRNNVPWPDRDWEVNAESFCFYRK |
| Ga0306922_112478982 | 3300032001 | Soil | GEKVEADVPADSEICVGNEEEIGATTYAQFWRNKVPWPNRDWEVNAENFCFYKK |
| Ga0318556_106315841 | 3300032043 | Soil | PNGGRHTGVSPQGTTVEAEVPAGSEICVGNEEEIGATTYAQFWRNNVPWPDRDWEVNAESFCFYKK |
| Ga0318558_103685301 | 3300032044 | Soil | PECLRPKWTECVSLPNGGRHTGVSPQGTTVEAEVPAGSEICVGNEEEIGATTYAQFWRNNVPWPDRDWEVNAESFCFYKK |
| Ga0318505_103533232 | 3300032060 | Soil | SEICVGNEEEIGATTYAQFWRNNVPWPDRDWEVNAESFCFYKK |
| Ga0307471_1041207611 | 3300032180 | Hardwood Forest Soil | AEIRVSNEWEIRAETYAQFARDGVPWPDRDWEVEVDTFCFYRN |
| Ga0306920_1039191312 | 3300032261 | Soil | SPYGARVQVDVPAGSEICVITEWEVRAETYALFARNGVPWPDRDWEVEVDTFCFYRN |
| Ga0335081_110065472 | 3300032892 | Soil | HTGVSPAGRTVEIDVPPGSDICVINEWEVRAETYAQFARNGVPWWPDRDWEVDVESFCFFKN |
| Ga0318519_104790162 | 3300033290 | Soil | PECLRPKWTECVSFPNGGHHTGVSPQGEKVEADVPADSEICVGNEEEIGATTYAQFWRNNVPWPDRDWEVNAESFCFYKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |