Metagenome / Metatranscriptome Family F103612

Basic Information
Family ID	F103612
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	54 residues
Representative Sequence	LTGFAAVGIDPQHFNLQAGIGATLRIGAAAALINAVIGVAAYLQKSPLPEE
Number of Associated Samples	89
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.92 %
% of genes near scaffold ends (potentially truncated)	90.10 %
% of genes from short scaffolds (< 2000 bps)	90.10 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.743 % of family members)
Environment Ontology (ENVO)	Unclassified (30.693 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.535 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1JGI12270J11330_101076642 2JGI12635J15846_105465103 3JGI12627J18819_104958402 4JGI25617J43924_101755362 5JGI25617J43924_102029303 6JGI26339J46600_100025763 7Ga0062388_1022633551 8Ga0066680_108972382 9Ga0066388_1076563671 10Ga0070711_1019922592 11Ga0073909_103045801 12Ga0066707_107898971 13Ga0066699_100329746 14Ga0066703_101695773 15Ga0066691_104190771 16Ga0070763_108512732 17Ga0070765_1003257013 18Ga0099829_105728571 19Ga0099830_101918363 20Ga0099830_108317571 21Ga0099828_107864041 22Ga0116128_10507732 23Ga0116225_14175812 24Ga0116224_100704623 25Ga0134109_100688751 26Ga0074045_100064071 27Ga0126376_104536471 28Ga0126378_109484012 29Ga0137392_102137341 30Ga0137391_107702602 31Ga0137389_101041613 32Ga0137388_106970251 33Ga0137388_110619462 34Ga0137381_106102261 35Ga0137378_104823301 36Ga0137378_115657311 37Ga0137361_113111091 38Ga0137390_114589623 39Ga0137397_105563491 40Ga0137394_107837102 41Ga0137394_112189062 42Ga0137419_119477451 43Ga0137404_119934882 44Ga0137407_110815223 45Ga0153915_113997412 46Ga0126375_120992392 47Ga0153916_110510522 48Ga0153916_123903411 49Ga0137420_14339753 50Ga0134089_100725111 51Ga0187824_102923771 52Ga0187877_10618163 53Ga0187803_102064281 54Ga0187848_1000001257 55Ga0187786_101251682 56Ga0187772_105063632 57Ga0187771_107268051 58Ga0210403_104934471 59Ga0210403_110767912 60Ga0210399_100537674 61Ga0210401_110245992 62Ga0215015_103390932 63Ga0210400_112415773 64Ga0210405_1000280318 65Ga0210388_101251981 66Ga0210393_104825222 67Ga0210392_109111821 68Ga0210409_102875184 69Ga0137417_12333123 70Ga0208323_10721312 71Ga0209807_10592134 72Ga0209329_10905143 73Ga0209217_11808392 74Ga0208990_10669293 75Ga0209588_12551131 76Ga0209118_11140202 77Ga0209073_104804372 78Ga0209811_103390081 79Ga0209701_102608281 80Ga0209701_104163291 81Ga0209701_105691702 82Ga0209167_103764852 83Ga0209067_109583711 84Ga0222749_101491302 85Ga0302177_101260463 86Ga0302307_104269041 87Ga0307474_103967722 88Ga0307469_108593622 89Ga0307469_111931422 90Ga0307477_101309274 91Ga0307475_100165922 92Ga0307478_105695013 93Ga0307479_102720214 94Ga0307479_105887673 95Ga0307471_1019766602 96Ga0335085_110415271 97Ga0335085_118526742 98Ga0335082_103096601 99Ga0335069_110160281 100Ga0335071_117946531 101Ga0371488_0021229_2033_2188
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1JGI12270J11330_101076642 2JGI12627J18819_104958402 3Ga0074045_100064071 4Ga0126376_104536471 5Ga0137394_107837102 6Ga0215015_103390932 7Ga0209167_103764852 8Ga0335085_110415271 9Ga0335071_117946531
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50. 1Ga0153916_123903411 2Ga0062388_1022633551 3Ga0073909_103045801 4Ga0099830_101918363 5Ga0074045_100064071 6Ga0126378_109484012 7Ga0137389_101041613 8Ga0187824_102923771 9Ga0187786_101251682 10Ga0210403_104934471 11Ga0209217_11808392 12Ga0209701_105691702 13Ga0209167_103764852 14Ga0209067_109583711 15Ga0302177_101260463 16Ga0335085_110415271 17Ga0335071_117946531 18Ga0371488_0021229_2033_2188
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.04% β-sheet: 0.00% Coil/Unstructured: 56.96%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF14384	BrnA_antitoxin	3.96
PF04365	BrnT_toxin	2.97
PF14317	YcxB	0.99
PF07238	PilZ	0.99
PF01464	SLT	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	2.97

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	98.02 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %
Unclassified	root	N/A	0.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	88.12 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	88.12 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %
Unclassified	root	N/A	0.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10107664	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1186	Open in IMG/M
3300001593\|JGI12635J15846_10546510	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300001867\|JGI12627J18819_10495840	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300002914\|JGI25617J43924_10175536	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	717	Open in IMG/M
3300002914\|JGI25617J43924_10202930	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	659	Open in IMG/M
3300003218\|JGI26339J46600_10002576	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5490	Open in IMG/M
3300004635\|Ga0062388_102263355	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300005174\|Ga0066680_10897238	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300005332\|Ga0066388_107656367	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300005439\|Ga0070711_101992259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	11.88%
Terrestrial	Environmental → Terrestrial	88.12%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	10.89%
Peat	Environmental → Terrestrial → Peat	2.97%
Sediment	Environmental → Aquatic → Sediment	0.99%
Soil	Environmental → Terrestrial → Soil	85.15%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	9.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.34%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.99%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.91%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.99%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.62%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.91%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.99%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.98%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.98%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	2.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.91%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.98%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.99%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.98%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.74%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.99%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M

Showing 1 to 10 of 89 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_101076642	3300000567	Peatlands Soil	SGAAGGVMTGLAAVGIDPGHFNLQAGMGATVKIGVAAAVINAVIGVAAYLQKSPLPDEGESK*
JGI12635J15846_105465103	3300001593	Forest Soil	GAAGGVLTGLAAVGIDPQHFNLQTGIGATFRIGAAAALINAVIGVAAYLQKSPLPET*
JGI12627J18819_104958402	3300001867	Forest Soil	GLAAVGIDPQHFNLQAGIGATLRIGAAAALINAVIGVAAYLQKSPLPEEGK*
JGI25617J43924_101755362	3300002914	Grasslands Soil	AISGAAGGVLTGLAAVGIDPQHFNLQAGMAATLRIGAAAALINAVIGVAAYLQKSPLPEETK*
JGI25617J43924_102029303	3300002914	Grasslands Soil	GFAAVGIDPQHFNLQSGSGATLRIGAAAALINAVIGVAAYLQKSPLPTE*
JGI26339J46600_100025763	3300003218	Bog Forest Soil	MTGLAAVGIDPAHFNLRAGMGATVRIGAAAALINAVIGVAAYLQKSPLPDE*
Ga0062388_1022633551	3300004635	Bog Forest Soil	GGVLTGLAAVGIDPQHFNLQTGMGATLHIGAAAALINAVIGVAAYLQKSPLPDS*
Ga0066680_108972382	3300005174	Soil	FAAVGIDPQHFNLQSGIGATLRIGAAAALINAVIGVAAYLQKSPLPEE*
Ga0066388_1076563671	3300005332	Tropical Forest Soil	GGVMTGLAAVGIDPAHFNLQAGMGATVRIAAAAALINAIIGVAAYLQKSPLPDS*
Ga0070711_1019922592	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	AGGVLTGLAAVGIDPQHFNLQTGMGATMRIGAAAALINAVIGVAAYLQKSPLPET*
Ga0073909_103045801	3300005526	Surface Soil	LTGFAAVGIDPQHFNLQSGTGATLRIAVAAALINAVIGVAAYLQKSPLPND*
Ga0066707_107898971	3300005556	Soil	GGVLTGFAAVGIDPQHFNLQAGIGATLKIAAAAELINAVIGVAAYLQKSPLPTE*
Ga0066699_100329746	3300005561	Soil	SGAAGGVLTGFAAVGIDPQHFNLQAGMGATMRIAAAAALINAVIGVAAYLQKSPLPTE*
Ga0066703_101695773	3300005568	Soil	GFAAVGIDPQHFNLQAGIGATLRIAAAAALINAVIGVAAYLQKSPLPQD*
Ga0066691_104190771	3300005586	Soil	AGGVLTGFAAVGIDPQHFNLQAGIGATLRIAAAAALINAVIGVAAYLQKSPLPQDSV*
Ga0070763_108512732	3300005610	Soil	LTGLAAVGIDPQHFNLQAGMGATTRIGAAAALINAVIGVAAYLQKSPLPSGD*
Ga0070765_1003257013	3300006176	Soil	GVSGAAGGVMTGLAAVGIDPGHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPGE
Ga0099829_105728571	3300009038	Vadose Zone Soil	AAVGIDPQHFNLQAGIGATFRIGAAAAVINAVIGVAAYLQKSPLPE*
Ga0099830_101918363	3300009088	Vadose Zone Soil	VLTGLAAVGIDPQHFNLQAGMAATLRIAAAAALINAVIGVAAYLQKSPLPSGD*
Ga0099830_108317571	3300009088	Vadose Zone Soil	ISGAAGGVLTGLAAVGIDPQHFNLQSGIGATFRIGVAAALINAVIGVAAYLQKSPLPEA*
Ga0099828_107864041	3300009089	Vadose Zone Soil	LTGFAAVGIDPQHFNLQSGIGATFRIGVAAALINAVIGVAAYLQKSPLPEEAK*
Ga0116128_10507732	3300009518	Peatland	MTGLAAVGIDPAHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPEE*
Ga0116225_14175812	3300009524	Peatlands Soil	MTGLAAVGIDPAHFNLQAGLGATVRIGAAAALINAVIGVAAYLQKSPLPDV*
Ga0116224_100704623	3300009683	Peatlands Soil	AAGGVLTGLAAVGIDPAHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPEE*
Ga0134109_100688751	3300010320	Grasslands Soil	LTGFAAVGIDPQHFNLQAGIGATLRIAAAAALINAVIGVAAYLQKSPLPQDSV*
Ga0074045_100064071	3300010341	Bog Forest Soil	GIDPGHFNLQAGMGATVKIGTAAALINAVIGVAAYLQKSPLPGDGESKQV*
Ga0126376_104536471	3300010359	Tropical Forest Soil	AAGGVLTGFAAVGIDPAHFNLQAGIGATFRIGMAAALINAIIGVAAYLQKSPLPEGN*
Ga0126378_109484012	3300010361	Tropical Forest Soil	GAGGILTGFAAVGIDPQHFNLQAGMGATMHIGVAAALINAVVGVAAYLQKSPLPVE*
Ga0137392_102137341	3300011269	Vadose Zone Soil	AGGVLTGLAAVGIDPQHFNLQSGIGATFRIGVAAALINAVIGVAAYLQKSPLPEA*
Ga0137391_107702602	3300011270	Vadose Zone Soil	LTGFAAVGIDPQHFNLQSGIGATLRIGAAAALINAVIGVAAYLQKSPLPSGD*
Ga0137389_101041613	3300012096	Vadose Zone Soil	MTGFAAVGIDPVHFNLQAGIGSTMRIGAAAALINAVIGVAAYLQKSPLPGSDS*
Ga0137388_106970251	3300012189	Vadose Zone Soil	MTGLAAVGIDPGHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPEG*
Ga0137388_110619462	3300012189	Vadose Zone Soil	AGGILTGFAAVGIDPQHFNLQAGIGATLRIGTAAALINAVIGVAAYLQKSPLPEEVK*
Ga0137381_106102261	3300012207	Vadose Zone Soil	AAISGAAGGVLTGFAAVGIDPQHFNLQSGVGATLRIAAAAALINAVIGVAAYLQKSPLPEE*
Ga0137378_104823301	3300012210	Vadose Zone Soil	TGFAAVGIDPQHFNLQAGIGATMRIAAAAALINAVIGVAAYLQKSPLPTE*
Ga0137378_115657311	3300012210	Vadose Zone Soil	GGVLTGLAAVGIDPQHFNLQSGIGATMRIGAAAAFINAVIGVAAYLQKSPLPTE*
Ga0137361_113111091	3300012362	Vadose Zone Soil	SGAAGGVLTGLAAVGIDPQHFNLQSGIGATSRIGAAAALINAVIGVAAYLQKSPLPEA*
Ga0137390_114589623	3300012363	Vadose Zone Soil	AAVGIDPQHFNLQSGIGATMRIGAAAAFINAVIGVAAYLQKSPLPTE*
Ga0137397_105563491	3300012685	Vadose Zone Soil	LTGFAAVGIDPQHFNLQSGIGATFRIGAAAALINAVIGVAAYLQKSPLPEETK*
Ga0137394_107837102	3300012922	Vadose Zone Soil	MLAAGVSGAAGGVMTGLAAVGIDPGHFNLQAGIGATMRIGAAAALINAVIGVAAYLQKSP
Ga0137394_112189062	3300012922	Vadose Zone Soil	AGGVLTGFAAVGIDPQHFNLQSGIGATFRIGAAAALINAVIGVAAYLQKSPLPSGD*
Ga0137419_119477451	3300012925	Vadose Zone Soil	AAISGAAGGVLTGLAAVGIDPQHFNLQSGIGATSRIGAAAALINAVIGVAAYLQKSPLPEA*
Ga0137404_119934882	3300012929	Vadose Zone Soil	VLTGFAAVGIDPQHFNLQSGSGATLRIAAAAALINAVIGVAAYLQKSPLPAE*
Ga0137407_110815223	3300012930	Vadose Zone Soil	AAVGIDPQHFNLQSGMGATFRIGVAAALINAVIGVAAYLQKSPLPEEAK*
Ga0153915_113997412	3300012931	Freshwater Wetlands	AAVGIDPQHFNLQAGIGATLRIGAAAALINAVIGVAAYLQKSPLPEE*
Ga0126375_120992392	3300012948	Tropical Forest Soil	GGAGGILTGFAAVGIDPQHFNLQAGIGATMRIGCAAALINAVIGVAAYLQKSPLPAE*
Ga0153916_110510522	3300012964	Freshwater Wetlands	FAAVGIDPQHFNLQAGIGATLRIGAAAALINAVIGVAAYLQKSPLPEE*
Ga0153916_123903411	3300012964	Freshwater Wetlands	LTGFAAVGIDPQHFNLQAGIGATLRIGAAAALINAVIGVAAYLQKSPLPEE*
Ga0137420_14339753	3300015054	Vadose Zone Soil	VLTGFAAVGIDPQHFNLQAGIGSTLRIGVAAAVINAVIGVAAYLQKSPLPNGD*
Ga0134089_100725111	3300015358	Grasslands Soil	LTGFAAVGIDPQHFNLQAGIGATLRIAAAAALINAVIGVAAYLQKSPLPQD*
Ga0187824_102923771	3300017927	Freshwater Sediment	LAAVGIDPAHFNLQTGIGSTLRIGLAAAAINAIIGVAAYLQKSPLPQGDM
Ga0187877_10618163	3300017931	Peatland	MTGLAAVGIDPAHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPEE
Ga0187803_102064281	3300017934	Freshwater Sediment	GVMTGLAAVGIDPAHFNLQAGMGATVRIGTAAALINAVIGVAAYLQKSPLPDSN
Ga0187848_1000001257	3300017935	Peatland	MTGLAAVGIDPAHFNLQAGMGATVRIGMAAALINAVIGVAAYLQKSPLPDE
Ga0187786_101251682	3300017944	Tropical Peatland	SGASGGVMTGLAAVGIDPGHFNLQAGIGATVRIAIAAALINAVIGVAAYLQKSPLPA
Ga0187772_105063632	3300018085	Tropical Peatland	LAAVGIDPAHFNLQAGIGATAKIGAAAALINAVIGVAAYLQKSPLPEEGSKAS
Ga0187771_107268051	3300018088	Tropical Peatland	GISGAAGGVLTGLAAVGIDPAHFNLQAGMGATVKIGAAAALINAVIGVAAYLQKSPLPEEGK
Ga0210403_104934471	3300020580	Soil	GVLTGFAAVGIDPQHFNLQSGIAATFRIGAAAAVINAVIGVAAYLQKSPLPSGD
Ga0210403_110767912	3300020580	Soil	GVSGAAGGVMTGLAAVGIDPGHFNLQAGMGATVRIGTAAALINAVIGVAAYLQKSPLPEG
Ga0210399_100537674	3300020581	Soil	AGGVMTGLAAVGIDPGHFNLQAGIGATMRIGAAAALINAVIGVAAYLQKSPLPEG
Ga0210401_110245992	3300020583	Soil	AAGVSGAAGGVMTGLAAVGIDPGHFNLQAGMGATVRIGAAAAFINAVIGVAAYLQKSPLPAD
Ga0215015_103390932	3300021046	Soil	MCIRDRAISGAAGGVLTGLAAVGIDPQHFNLQTGGGATFRIGAAAALINAVIGVAAYLQKSPLPAE
Ga0210400_112415773	3300021170	Soil	LTGFAAAGIDPQHFNLQSGIGATMRIGAAAALINAVIGVAAYLQKSPLPSE
Ga0210405_1000280318	3300021171	Soil	AGGVMTGLAAVGIDPGHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPGE
Ga0210388_101251981	3300021181	Soil	SGGAGGVLTGFAAVGIDPQHFNLQTGIGATLRIAAAAALINAVIGVAAYLQKSPLPSD
Ga0210393_104825222	3300021401	Soil	AGGGVMRGLAAVGIDPGHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPGE
Ga0210392_109111821	3300021475	Soil	TGLAAVGIDPGHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPEG
Ga0210409_102875184	3300021559	Soil	AAVGIDPQHFNLQSGSGATLRIAAAAALINAVIGVAAYLQKSPLPTE
Ga0137417_12333123	3300024330	Vadose Zone Soil	VLTGFAAVGIDPQHFNLQAGIGATLRIAAAAALINAVIGVAAYLQKSPLPTE
Ga0208323_10721312	3300025439	Peatland	GVMTGLAAVGIDPAHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPEE
Ga0209807_10592134	3300026530	Soil	FAAVGIDPQHFNLQAGIGATLRIAAAAALINAVIGVAAYLQKSPLPQD
Ga0209329_10905143	3300027605	Forest Soil	AGGVLTGLAAVGIDPQHFNLQAGIGATFRIGAAAALINAVIGVAAYLQKSPLPAE
Ga0209217_11808392	3300027651	Forest Soil	AVSGGAGGVLTGLAAVGIDPQHFNLQTGIGATMRIGAAAAMINALIGVAAYLQKSPLPE
Ga0208990_10669293	3300027663	Forest Soil	GGVLTGFAAVGIDPQHFNLQAGIGATLRIAAAAALINAVIGVAAYLQKSPLPTE
Ga0209588_12551131	3300027671	Vadose Zone Soil	AAVGIDPQHFNLQSGIGATMRIGAAAALINAVIGVAAYLQKSPLPDEAK
Ga0209118_11140202	3300027674	Forest Soil	GLAAVGIDPGHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPEG
Ga0209073_104804372	3300027765	Agricultural Soil	AGGILTGFAAVGIDPQHFNLQAGIGATMRIAAAAALINAVIGVAAYLQKSPLPQDGV
Ga0209811_103390081	3300027821	Surface Soil	LTGFAAVGIDPQHFNLQSGTGATLRIAVAAALINAVIGVAAYLQKSPLPND
Ga0209701_102608281	3300027862	Vadose Zone Soil	AAGGVLTGLAAVGIDPQHFNLQSGIGATFRIGSAAALINAVIGVAAYLQKSPLPPGD
Ga0209701_104163291	3300027862	Vadose Zone Soil	AISGAAGGVLTGFAAVGIDPQHFNLQSGSGATLRIGAAAALINAVIGVAAYLQKSPLPTE
Ga0209701_105691702	3300027862	Vadose Zone Soil	GLAAVGIDPQHFNLQSGSGATLRIGTAAALINAVIGVAAYLQKSPLPSE
Ga0209167_103764852	3300027867	Surface Soil	ISGAAGGILTGFAAVGIDPQHFNLQSGMRETMRMGAAAALINAVIGVAAYLQKSPLPND
Ga0209067_109583711	3300027898	Watersheds	TGFAAVGIDSQHFNLQAGMGATMRIAAAAALINAVIGVAAYLQKSPLPEDGV
Ga0222749_101491302	3300029636	Soil	AGISGAGGGVLTGLAAVGIDPQHFNLQAGMGATMRIGAAAALINAVIGVAAYLQKSPLPG
Ga0302177_101260463	3300030053	Palsa	SGAAGGVLTGFAAVGIDPQHFNLQSGVSATLHIAEAAALINAIIGVAAYLQKSPLPDS
Ga0302307_104269041	3300031233	Palsa	GGLLTGFAAVGIDPQHFNLQAGLGATFHIGEAAALINAVIGVAAYLQKSPLPE
Ga0307474_103967722	3300031718	Hardwood Forest Soil	LTGLAALGIDPQHFNLQTGIGATFRIGAAAALINAVIGVAAYLQKSPLPET
Ga0307469_108593622	3300031720	Hardwood Forest Soil	TGLAAVGIDPQHFNLQSGIGATFRIGAAAALINAVIGVAAYLQKSPLPSGD
Ga0307469_111931422	3300031720	Hardwood Forest Soil	GAAGGVLTGLAAVGIDPQHFNLQSGIGATFRIGAAAALINAVIGVAAYLQKSPLPAE
Ga0307477_101309274	3300031753	Hardwood Forest Soil	AISGAAGGVLTGLAALGIDPQHFNLQTGIGATFRIGAAAALINAVIGVAAYLQKSPLPET
Ga0307475_100165922	3300031754	Hardwood Forest Soil	VLTGFAAVGIDPQHFNLQSGIGATLRIGAAAALINAVIGVAAYLQKSPLPSE
Ga0307478_105695013	3300031823	Hardwood Forest Soil	GGILTGFAAVGIDPQHFNLQAGIRATLRIAVAAALINAVIGVAAYLQKSPLPTE
Ga0307479_102720214	3300031962	Hardwood Forest Soil	LTGLAAVGIDPQHFNLQSGIGATFRIGAAAALINAVIGVAAYLQKSPLPEE
Ga0307479_105887673	3300031962	Hardwood Forest Soil	GGVLTGFAAVGIDPQHFNLQAGMGATLRIAEAAALINAVIGVAAYLQKSPLPSE
Ga0307471_1019766602	3300032180	Hardwood Forest Soil	GGAGGILTGFAAVGIDPQHFNLQSGMGATFRIGAAASLINAVIGVAAYLQKSPLPSGD
Ga0335085_110415271	3300032770	Soil	IDPQHFNLQAGVGATARIGAAAAMINAVIGVAAYLQKSPLPDRDERRP
Ga0335085_118526742	3300032770	Soil	TGLAAVGIDPGHFNLQAGMGATVRIGAAAALINAAIGVAAYLQKSPLPGDEAKI
Ga0335082_103096601	3300032782	Soil	VSGGAGGVMTGLAAVGIDPGHFNLQAGMGATVRIGAAAALINAAIGVAAYLQKSPLPGDEAKI
Ga0335069_110160281	3300032893	Soil	AVGIDPGHFNLQAGMGATVRIGAAAALINAAIGVAAYLQKSPLPGDEAKI
Ga0335071_117946531	3300032897	Soil	VLTGFAAVGIDPQHFNLQSGMRETLRMGAAAALINSIIGVAAYLQKSPMPPSGDS
Ga0371488_0021229_2033_2188	3300033983	Peat Soil	MTGLAAVGIDPAHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103612

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences