NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103632

Metagenome / Metatranscriptome Family F103632

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103632
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 46 residues
Representative Sequence MREERLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAMLP
Number of Associated Samples 84
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 48.48 %
% of genes near scaffold ends (potentially truncated) 91.09 %
% of genes from short scaffolds (< 2000 bps) 94.06 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (53.465 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(25.743 % of family members)
Environment Ontology (ENVO) Unclassified
(32.673 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(38.614 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.
1JGI10216J12902_1101665354
2Ga0068869_1004027941
3Ga0070688_1015530131
4Ga0070659_1000539954
5Ga0070659_1021163292
6Ga0066700_108245272
7Ga0070664_1021963462
8Ga0068861_1003463783
9Ga0081455_100647304
10Ga0070712_1017974142
11Ga0075435_1011438831
12Ga0066709_1003948601
13Ga0105241_125986211
14Ga0105249_103975251
15Ga0105249_104085143
16Ga0134124_102357553
17Ga0134127_118533142
18Ga0137399_117139182
19Ga0137381_115068401
20Ga0137386_108882102
21Ga0137369_103990751
22Ga0137371_104663551
23Ga0150984_1030415302
24Ga0150984_1196560152
25Ga0150984_1199452181
26Ga0157354_10591361
27Ga0137397_104929652
28Ga0137404_106615901
29Ga0164306_110146271
30Ga0164305_108041222
31Ga0157369_119865612
32Ga0157375_132712291
33Ga0132255_1029340791
34Ga0182036_106501681
35Ga0182033_109397141
36Ga0182035_116491212
37Ga0182035_120121611
38Ga0182034_105453534
39Ga0182039_116740811
40Ga0182038_102391741
41Ga0184605_102442782
42Ga0184608_101538164
43Ga0184620_102063671
44Ga0184611_10518351
45Ga0184612_103544401
46Ga0066667_110594362
47Ga0190270_107023442
48Ga0190270_115753502
49Ga0190270_116260412
50Ga0190274_124548551
51Ga0193713_10841171
52Ga0193728_11255012
53Ga0193755_12057831
54Ga0193697_11525172
55Ga0193696_10932342
56Ga0207690_106398211
57Ga0207690_107435303
58Ga0207678_104096042
59Ga0307321_11082382
60Ga0307295_101437882
61Ga0307293_101262292
62Ga0307285_101251171
63Ga0307285_101295082
64Ga0307313_100047373
65Ga0307313_100224973
66Ga0307307_101760171
67Ga0307317_101265821
68Ga0307319_100413793
69Ga0307320_100759242
70Ga0307290_102228472
71Ga0307299_100770982
72Ga0307308_1000622210
73Ga0308201_103106521
74Ga0318538_104801521
75Ga0307469_115760582
76Ga0306918_112009371
77Ga0306918_114934352
78Ga0318537_101191371
79Ga0318509_101975334
80Ga0318521_100681345
81Ga0318508_10910471
82Ga0318508_12052672
83Ga0318511_104898141
84Ga0310907_107390871
85Ga0306925_107571172
86Ga0306925_108204071
87Ga0306925_115462732
88Ga0306923_106257023
89Ga0310916_115053773
90Ga0310913_110262441
91Ga0310910_108212103
92Ga0310909_105746883
93Ga0318507_103668121
94Ga0318559_103954511
95Ga0318505_102308671
96Ga0318505_105098301
97Ga0318513_101140211
98Ga0306924_115897091
99Ga0306920_1019366651
100Ga0306920_1029580703
101Ga0306920_1031515463
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 18.92%    β-sheet: 17.57%    Coil/Unstructured: 63.51%
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Variant

51015202530354045MREERLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAMLPSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.71
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Structural matches with SCOPe domains



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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
46.5%53.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Unplanted Soil
Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Rhizosphere
Tabebuia Heterophylla Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Avena Fatua Rhizosphere
5.0%25.7%6.9%15.8%16.8%5.9%3.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_11016653543300000956SoilDRLEVSVSFDEGRGYVATAAELRQPVMALSLGGLRRKIEIALLQRRDKAL*
Ga0068869_10040279413300005334Miscanthus RhizosphereMPDDRLEVSVTFDERGYIGSAPELRQAVVALSLGLRRKIEIAMLPDDVRVVL
Ga0070688_10155301313300005365Switchgrass RhizosphereMREERLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAMLP
Ga0070659_10005399543300005366Corn RhizosphereMREERLEVSVTFDERHGYIASEPERRSAVVALSLGGLRRKIEI
Ga0070659_10211632923300005366Corn RhizosphereVVMSGDRLEVNVTCDERGYVGSAPELRSAVVALSLGGLRR
Ga0066700_1082452723300005559SoilMRDERLEVSVTFVPAKGYVASAPELRQPVVAVSLGGLRRRIEALMLPDSV
Ga0070664_10219634623300005564Corn RhizosphereMREERLEVSVTFDERHGYIASEPELRSAVVALSLGGLRRKIEIAMLPD
Ga0068861_10034637833300005719Switchgrass RhizosphereMSGDRLEVNVTCDERGYVGSAPELRSAVVALSLGGLRRKIEIAMLPDDV
Ga0081455_1006473043300005937Tabebuia Heterophylla RhizosphereMRDERLEVSVTFDERRGYVGTAPDLRAPVVALSLGGCGARSRR*
Ga0070712_10179741423300006175Corn, Switchgrass And Miscanthus RhizosphereMREERLEVSVTFDPAKGYIGTAAELRQPVTALSLGGLRRRIEGLMLPDEV
Ga0075435_10114388313300007076Populus RhizosphereMREERLEVSVTFDARHGYVASAPELRSAVVALSLGGLRRKIEIAM
Ga0066709_10039486013300009137Grasslands SoilMRDERLEVSVTFVPAKGYVASAPELRQPVVAVSLGGLRRR
Ga0105241_1259862113300009174Corn RhizosphereMREERFEVSVTFDERHGYVASAPELRSAVVALSLGGLRRKIEIAMLPDDVRVVLQL
Ga0105249_1039752513300009553Switchgrass RhizosphereMSGDRLEVNVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAMLPDDVR
Ga0105249_1040851433300009553Switchgrass RhizosphereLERLEESVTFDERHGYVASAPELRSPVMALSPGGLRRKIEVLMVPR*
Ga0134124_1023575533300010397Terrestrial SoilMPDERLEVSVTFDERGYIGSAPELRQAVVALSLGGL
Ga0134127_1185331423300010399Terrestrial SoilMSGDRLEVNVTFDERGYIGSAPELRQAVVALSLGGLR
Ga0137399_1171391823300012203Vadose Zone SoilMRDERFEVTVTFDERRGYIGSAPELRSPVVALSLGGMRRRIEALM
Ga0137381_1150684013300012207Vadose Zone SoilMRDERLEVSVTFDERRGYVATAPELRAPVTALSLGGLR
Ga0137386_1088821023300012351Vadose Zone SoilMSGDRLEVSVSFDERCGYFGSHPELRSPVVALSLGGLRRKIETLMLPDDVHVVLHLD
Ga0137369_1039907513300012355Vadose Zone SoilVSVTFDPAKGYAATAPEQREPVLALSLGGVRRRVEALLLPDDLHVVLQLDV
Ga0137371_1046635513300012356Vadose Zone SoilMSGDRLEVSVTFDAERGYIGSAPELRTPVTALSLGGLRRRIEALMIPDDV
Ga0150984_10304153023300012469Avena Fatua RhizosphereMPDKRLEVSVTFDQRGYIGSAPELRSAVVALSLGGLRRKIEALLLPAEV
Ga0150984_11965601523300012469Avena Fatua RhizosphereMPDERLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAMLPDDVRVVLQL
Ga0150984_11994521813300012469Avena Fatua RhizosphereMREERLEVSVTFDERHGYIGSAPELRSAMVALSLGG
Ga0157354_105913613300012517Unplanted SoilMREELLEVSVTFDERGYIGSAPELRQAVVALGLGVLRRKIEIAMFA*
Ga0137397_1049296523300012685Vadose Zone SoilVEVSVTFDERGYIGSAPELRSAVVALSLGGLRRKIEIALLLPAEVGIVL
Ga0137404_1066159013300012929Vadose Zone SoilMMGADRFEVSVTFDQRRGGYVGTAPELKAPVVALSLGGLRRRIE
Ga0164306_1101462713300012988SoilMREARLEVSVTFDERHGYVGSAAELRSPVMALSLGGLRRKIEVL
Ga0164305_1080412223300012989SoilMAITVRGGDVNVTLDERGYIGSAPELRQPVVALSLGGLRHKIEALLLP
Ga0157369_1198656123300013105Corn RhizosphereMREERLEVGVTFDERGYIGSAPELRQAVVALSLGGLRR
Ga0157375_1327122913300013308Miscanthus RhizosphereLAKLDVTVTYDARHGYIATALELRQPVVALSLGGLRRRIEALMV
Ga0132255_10293407913300015374Arabidopsis RhizosphereMSGDRLEVNVTFDERGYVGSAPELRSAVVALSLGGLRRKIEIAMLPDDVR
Ga0182036_1065016813300016270SoilSVTFDAAKGYVATAAELRQPVVALSLGGLRRRIGDAA
Ga0182033_1093971413300016319SoilLLRRWPQRGSIMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPD
Ga0182035_1164912123300016341SoilMASEDRLTVGVTYDESRGYVGSAPELRQPVVALSLGG
Ga0182035_1201216113300016341SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLR
Ga0182034_1054535343300016371SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDEVVVLL
Ga0182039_1167408113300016422SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDEVV
Ga0182038_1023917413300016445SoilMRLDVTVTYAAERGYVASAPELRQPIVALSLGGLRRRIEIALLPDDVDVQL
Ga0184605_1024427823300018027Groundwater SedimentMSGDRFEVNVTFDAAHGYVASAPELRQPVVALSLGGLRRRIEI
Ga0184608_1015381643300018028Groundwater SedimentMSADRLDVTVTYDASCGYIGSVPGLNAPVVALSLGG
Ga0184620_1020636713300018051Groundwater SedimentMTDAACGVTVTYEAGHGYITTALELRQPVVALSLGGLRRRIEA
Ga0184611_105183513300018067Groundwater SedimentSVTFDERHGYVASAPELRTAVVALSLGGLRRKIEALLEEEEPVPVLSELGPP
Ga0184612_1035444013300018078Groundwater SedimentMPDERLEVSVTFDERGYIGSAPELRSSVVALSLGGLRRKIE
Ga0066667_1105943623300018433Grasslands SoilMRDERLEVSVTFVPAKGYVASAPELRQPVVAVSLGGLRR
Ga0190270_1070234423300018469SoilMPDGRLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAML
Ga0190270_1157535023300018469SoilMTRLSVDVSFDPAHGYVGTAPELRTAVRALSLNGLRKQIEDHPPSVA
Ga0190270_1162604123300018469SoilMSGDRLEVNVTFDERGYIGSAPELRWPVMALSLGGLRRKIE
Ga0190274_1245485513300018476SoilMSGDKLEIKVTFEERGYIGSAPELRQAVVALSLGGLRRKIEIAMLPDDV
Ga0193713_108411713300019882SoilMREERLEVSVTFDERHGYVASAPELRWPVVALSLGGLRRKI
Ga0193728_112550123300019890SoilMREERLEVSVTFDERHGYVASAPELRTAVVALSLGGLRRKIEALLLP
Ga0193755_120578313300020004SoilMSGDRLEVNVTFDERGYIGSAPELRQLVVALSLGGLRRKIEALMVPD
Ga0193697_115251723300020005SoilMPEERLEVSVTFDARHGYVASAPELRSVVVALSLGGLRRKIEIAMLPDDVRVVLQL
Ga0193696_109323423300020016SoilMSGDRLEVNVTFDERGYIGSAPELRWPVMALSLGGLRRKIEALMMPDEVRVMLQL
Ga0207690_1063982113300025932Corn RhizosphereMSGNRLDVTVTYDAQHGYIASAPELRQPVVALSLGGLRRRIE
Ga0207690_1074353033300025932Corn RhizosphereMREERLEVSVTFDERGYIGSAPELRWPVTALSLGGLRRKIEIAMLPDDVRVV
Ga0207678_1040960423300026067Corn RhizosphereMSGDRLEVNVTCDERGYVGSAPELRSAVVALSLGGLRRKIEIAMLPDDVRVVLQLD
Ga0307321_110823823300028704SoilMSGDRLEVNVTFDERGYIGSAPELRSSAMALSLGGLRRKIEIAMLPDDVRV
Ga0307295_1014378823300028708SoilMSGDRLEVNVTFDERGYIGSAPELRQAVVALSLGGLRR
Ga0307293_1012622923300028711SoilMSGDRLEVNVTFDERGYIGSAPELRSSAMALSLGGLRRKIEIAM
Ga0307285_1012511713300028712SoilLEVSVTFDERHGYIASAPELRTAVVALSLGGLRRKTPWWR
Ga0307285_1012950823300028712SoilMSGKRLEVTVSYDAERGYVASAPELRQPVTALSLGDLRRRIEALMLPDDPVI
Ga0307313_1000473733300028715SoilMREERLEVSVTFDERHGYIASAPELRTAVVALSLGGLRRKTPWWR
Ga0307313_1002249733300028715SoilMPDERLEVSVTFDERGYIGSAPELRQAVVALSLGGLR
Ga0307307_1017601713300028718SoilMSGDRFEENVTFDAAHGYVASAPELRQPVVALSLGGLRRRIEI
Ga0307317_1012658213300028720SoilMREERLEVSVTFDERHGYVASAPELRTAVVALSLGGLRRKIEALLLPAEVE
Ga0307319_1004137933300028722SoilMRDERLEVSVTFDERRGYIGSAAELRSPVVALRLGGLRRKVEIALLP
Ga0307320_1007592423300028771SoilMREERLEVSVTFDERHGYIGSAPELRSAVVALSLGGLRR
Ga0307290_1022284723300028791SoilMREERLEVSVTFDERHGYVASAPELRSAVVALSLGGLRRRIEIAMLPDNVRVVLH
Ga0307299_1007709823300028793SoilMREERLEVSVTFDERHGYVASAPELRSAVVALSLG
Ga0307308_10006222103300028884SoilMSGDRLEVNVTFDERGYIGSAPELRQLVVALSLGGLRRKIEALMVPDEPIVVLQ
Ga0308201_1031065213300031091SoilMREERVEVSVTFDERHGYIGSAPELRSSVTALSLGGLRRKIE
Ga0318538_1048015213300031546SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDEVVVL
Ga0307469_1157605823300031720Hardwood Forest SoilMPDERLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEI
Ga0306918_1120093713300031744SoilMASEDRLTVAVTYDESRGYVGSAPELRQPAVALSLGGLRRKVEIA
Ga0306918_1149343523300031744SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAM
Ga0318537_1011913713300031763SoilMASEHRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAM
Ga0318509_1019753343300031768SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVDGVPRRGD
Ga0318521_1006813453300031770SoilMRLDVTVTYAAERGYVASAPELRQPIVALSLGGLRRRIEIALLPDDVDVQLLLDGH
Ga0318508_109104713300031780SoilMASEHRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKIEIAMLPDEVVVLLSLD
Ga0318508_120526723300031780SoilMSKGGRFEVAVTFEERRGYVGSAPELCQPVVALSLGGLRRKVEIAMLPDDVIVTLNL
Ga0318511_1048981413300031845SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDEAVVLLSL
Ga0310907_1073908713300031847SoilMRDERLEVSVTFDERHGYIASAAELRRAVVALSLGGLRRKDRDRDAA
Ga0306925_1075711723300031890SoilMASEDRLTVAVTYDESRGYVGSASELRQPVVALSLGGLRRKVEIAMLPDEVVVLLSLDRTARLER
Ga0306925_1082040713300031890SoilMASEDRLTVAVTYDESRGYVGSAPELRQPAVALSLGGLRRKVEIAMLPD
Ga0306925_1154627323300031890SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAML
Ga0306923_1062570233300031910SoilMASEDRLTVAVTYDESRGYVGSAPELRQPAVALSLGGLRRKVEIAMLP
Ga0310916_1150537733300031942SoilMASEDRLTVGVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDE
Ga0310913_1102624413300031945SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPD
Ga0310910_1082121033300031946SoilMASEDRLTVAVTYDESRGYVGSAPELRQPAVALSLGGLRRKVEIAMLPDEVVVLLS
Ga0310909_1057468833300031947SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEI
Ga0318507_1036681213300032025SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSL
Ga0318559_1039545113300032039SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRR
Ga0318505_1023086713300032060SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGL
Ga0318505_1050983013300032060SoilMSKGGRFEVAVTFEERRGYVGSAPALCQPVVALSLGGLRRKVEIAMLPDDVIVTL
Ga0318513_1011402113300032065SoilMASEHRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKIEIAMLPDEVVVLL
Ga0306924_1158970913300032076SoilMSKGGRFEVAVTFEERRGYVGSAPELCQPVVALSLGGLRRKVEIAMLRDDVIVTLNLDRA
Ga0306920_10193666513300032261SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDE
Ga0306920_10295807033300032261SoilMASEHRLTVAVTYDESRGYVGSAPELRQPVVALSLG
Ga0306920_10315154633300032261SoilMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRK


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