Basic Information | |
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Family ID | F103632 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 101 |
Average Sequence Length | 46 residues |
Representative Sequence | MREERLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAMLP |
Number of Associated Samples | 84 |
Number of Associated Scaffolds | 101 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 48.48 % |
% of genes near scaffold ends (potentially truncated) | 91.09 % |
% of genes from short scaffolds (< 2000 bps) | 94.06 % |
Associated GOLD sequencing projects | 79 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.71 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (53.465 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.743 % of family members) |
Environment Ontology (ENVO) | Unclassified (32.673 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (38.614 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 18.92% β-sheet: 17.57% Coil/Unstructured: 63.51% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.71 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Soil Vadose Zone Soil Terrestrial Soil Unplanted Soil Soil Grasslands Soil Soil Soil Hardwood Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Arabidopsis Rhizosphere Tabebuia Heterophylla Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Avena Fatua Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI10216J12902_1101665354 | 3300000956 | Soil | DRLEVSVSFDEGRGYVATAAELRQPVMALSLGGLRRKIEIALLQRRDKAL* |
Ga0068869_1004027941 | 3300005334 | Miscanthus Rhizosphere | MPDDRLEVSVTFDERGYIGSAPELRQAVVALSLGLRRKIEIAMLPDDVRVVL |
Ga0070688_1015530131 | 3300005365 | Switchgrass Rhizosphere | MREERLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAMLP |
Ga0070659_1000539954 | 3300005366 | Corn Rhizosphere | MREERLEVSVTFDERHGYIASEPERRSAVVALSLGGLRRKIEI |
Ga0070659_1021163292 | 3300005366 | Corn Rhizosphere | VVMSGDRLEVNVTCDERGYVGSAPELRSAVVALSLGGLRR |
Ga0066700_108245272 | 3300005559 | Soil | MRDERLEVSVTFVPAKGYVASAPELRQPVVAVSLGGLRRRIEALMLPDSV |
Ga0070664_1021963462 | 3300005564 | Corn Rhizosphere | MREERLEVSVTFDERHGYIASEPELRSAVVALSLGGLRRKIEIAMLPD |
Ga0068861_1003463783 | 3300005719 | Switchgrass Rhizosphere | MSGDRLEVNVTCDERGYVGSAPELRSAVVALSLGGLRRKIEIAMLPDDV |
Ga0081455_100647304 | 3300005937 | Tabebuia Heterophylla Rhizosphere | MRDERLEVSVTFDERRGYVGTAPDLRAPVVALSLGGCGARSRR* |
Ga0070712_1017974142 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MREERLEVSVTFDPAKGYIGTAAELRQPVTALSLGGLRRRIEGLMLPDEV |
Ga0075435_1011438831 | 3300007076 | Populus Rhizosphere | MREERLEVSVTFDARHGYVASAPELRSAVVALSLGGLRRKIEIAM |
Ga0066709_1003948601 | 3300009137 | Grasslands Soil | MRDERLEVSVTFVPAKGYVASAPELRQPVVAVSLGGLRRR |
Ga0105241_125986211 | 3300009174 | Corn Rhizosphere | MREERFEVSVTFDERHGYVASAPELRSAVVALSLGGLRRKIEIAMLPDDVRVVLQL |
Ga0105249_103975251 | 3300009553 | Switchgrass Rhizosphere | MSGDRLEVNVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAMLPDDVR |
Ga0105249_104085143 | 3300009553 | Switchgrass Rhizosphere | LERLEESVTFDERHGYVASAPELRSPVMALSPGGLRRKIEVLMVPR* |
Ga0134124_102357553 | 3300010397 | Terrestrial Soil | MPDERLEVSVTFDERGYIGSAPELRQAVVALSLGGL |
Ga0134127_118533142 | 3300010399 | Terrestrial Soil | MSGDRLEVNVTFDERGYIGSAPELRQAVVALSLGGLR |
Ga0137399_117139182 | 3300012203 | Vadose Zone Soil | MRDERFEVTVTFDERRGYIGSAPELRSPVVALSLGGMRRRIEALM |
Ga0137381_115068401 | 3300012207 | Vadose Zone Soil | MRDERLEVSVTFDERRGYVATAPELRAPVTALSLGGLR |
Ga0137386_108882102 | 3300012351 | Vadose Zone Soil | MSGDRLEVSVSFDERCGYFGSHPELRSPVVALSLGGLRRKIETLMLPDDVHVVLHLD |
Ga0137369_103990751 | 3300012355 | Vadose Zone Soil | VSVTFDPAKGYAATAPEQREPVLALSLGGVRRRVEALLLPDDLHVVLQLDV |
Ga0137371_104663551 | 3300012356 | Vadose Zone Soil | MSGDRLEVSVTFDAERGYIGSAPELRTPVTALSLGGLRRRIEALMIPDDV |
Ga0150984_1030415302 | 3300012469 | Avena Fatua Rhizosphere | MPDKRLEVSVTFDQRGYIGSAPELRSAVVALSLGGLRRKIEALLLPAEV |
Ga0150984_1196560152 | 3300012469 | Avena Fatua Rhizosphere | MPDERLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAMLPDDVRVVLQL |
Ga0150984_1199452181 | 3300012469 | Avena Fatua Rhizosphere | MREERLEVSVTFDERHGYIGSAPELRSAMVALSLGG |
Ga0157354_10591361 | 3300012517 | Unplanted Soil | MREELLEVSVTFDERGYIGSAPELRQAVVALGLGVLRRKIEIAMFA* |
Ga0137397_104929652 | 3300012685 | Vadose Zone Soil | VEVSVTFDERGYIGSAPELRSAVVALSLGGLRRKIEIALLLPAEVGIVL |
Ga0137404_106615901 | 3300012929 | Vadose Zone Soil | MMGADRFEVSVTFDQRRGGYVGTAPELKAPVVALSLGGLRRRIE |
Ga0164306_110146271 | 3300012988 | Soil | MREARLEVSVTFDERHGYVGSAAELRSPVMALSLGGLRRKIEVL |
Ga0164305_108041222 | 3300012989 | Soil | MAITVRGGDVNVTLDERGYIGSAPELRQPVVALSLGGLRHKIEALLLP |
Ga0157369_119865612 | 3300013105 | Corn Rhizosphere | MREERLEVGVTFDERGYIGSAPELRQAVVALSLGGLRR |
Ga0157375_132712291 | 3300013308 | Miscanthus Rhizosphere | LAKLDVTVTYDARHGYIATALELRQPVVALSLGGLRRRIEALMV |
Ga0132255_1029340791 | 3300015374 | Arabidopsis Rhizosphere | MSGDRLEVNVTFDERGYVGSAPELRSAVVALSLGGLRRKIEIAMLPDDVR |
Ga0182036_106501681 | 3300016270 | Soil | SVTFDAAKGYVATAAELRQPVVALSLGGLRRRIGDAA |
Ga0182033_109397141 | 3300016319 | Soil | LLRRWPQRGSIMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPD |
Ga0182035_116491212 | 3300016341 | Soil | MASEDRLTVGVTYDESRGYVGSAPELRQPVVALSLGG |
Ga0182035_120121611 | 3300016341 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLR |
Ga0182034_105453534 | 3300016371 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDEVVVLL |
Ga0182039_116740811 | 3300016422 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDEVV |
Ga0182038_102391741 | 3300016445 | Soil | MRLDVTVTYAAERGYVASAPELRQPIVALSLGGLRRRIEIALLPDDVDVQL |
Ga0184605_102442782 | 3300018027 | Groundwater Sediment | MSGDRFEVNVTFDAAHGYVASAPELRQPVVALSLGGLRRRIEI |
Ga0184608_101538164 | 3300018028 | Groundwater Sediment | MSADRLDVTVTYDASCGYIGSVPGLNAPVVALSLGG |
Ga0184620_102063671 | 3300018051 | Groundwater Sediment | MTDAACGVTVTYEAGHGYITTALELRQPVVALSLGGLRRRIEA |
Ga0184611_10518351 | 3300018067 | Groundwater Sediment | SVTFDERHGYVASAPELRTAVVALSLGGLRRKIEALLEEEEPVPVLSELGPP |
Ga0184612_103544401 | 3300018078 | Groundwater Sediment | MPDERLEVSVTFDERGYIGSAPELRSSVVALSLGGLRRKIE |
Ga0066667_110594362 | 3300018433 | Grasslands Soil | MRDERLEVSVTFVPAKGYVASAPELRQPVVAVSLGGLRR |
Ga0190270_107023442 | 3300018469 | Soil | MPDGRLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAML |
Ga0190270_115753502 | 3300018469 | Soil | MTRLSVDVSFDPAHGYVGTAPELRTAVRALSLNGLRKQIEDHPPSVA |
Ga0190270_116260412 | 3300018469 | Soil | MSGDRLEVNVTFDERGYIGSAPELRWPVMALSLGGLRRKIE |
Ga0190274_124548551 | 3300018476 | Soil | MSGDKLEIKVTFEERGYIGSAPELRQAVVALSLGGLRRKIEIAMLPDDV |
Ga0193713_10841171 | 3300019882 | Soil | MREERLEVSVTFDERHGYVASAPELRWPVVALSLGGLRRKI |
Ga0193728_11255012 | 3300019890 | Soil | MREERLEVSVTFDERHGYVASAPELRTAVVALSLGGLRRKIEALLLP |
Ga0193755_12057831 | 3300020004 | Soil | MSGDRLEVNVTFDERGYIGSAPELRQLVVALSLGGLRRKIEALMVPD |
Ga0193697_11525172 | 3300020005 | Soil | MPEERLEVSVTFDARHGYVASAPELRSVVVALSLGGLRRKIEIAMLPDDVRVVLQL |
Ga0193696_10932342 | 3300020016 | Soil | MSGDRLEVNVTFDERGYIGSAPELRWPVMALSLGGLRRKIEALMMPDEVRVMLQL |
Ga0207690_106398211 | 3300025932 | Corn Rhizosphere | MSGNRLDVTVTYDAQHGYIASAPELRQPVVALSLGGLRRRIE |
Ga0207690_107435303 | 3300025932 | Corn Rhizosphere | MREERLEVSVTFDERGYIGSAPELRWPVTALSLGGLRRKIEIAMLPDDVRVV |
Ga0207678_104096042 | 3300026067 | Corn Rhizosphere | MSGDRLEVNVTCDERGYVGSAPELRSAVVALSLGGLRRKIEIAMLPDDVRVVLQLD |
Ga0307321_11082382 | 3300028704 | Soil | MSGDRLEVNVTFDERGYIGSAPELRSSAMALSLGGLRRKIEIAMLPDDVRV |
Ga0307295_101437882 | 3300028708 | Soil | MSGDRLEVNVTFDERGYIGSAPELRQAVVALSLGGLRR |
Ga0307293_101262292 | 3300028711 | Soil | MSGDRLEVNVTFDERGYIGSAPELRSSAMALSLGGLRRKIEIAM |
Ga0307285_101251171 | 3300028712 | Soil | LEVSVTFDERHGYIASAPELRTAVVALSLGGLRRKTPWWR |
Ga0307285_101295082 | 3300028712 | Soil | MSGKRLEVTVSYDAERGYVASAPELRQPVTALSLGDLRRRIEALMLPDDPVI |
Ga0307313_100047373 | 3300028715 | Soil | MREERLEVSVTFDERHGYIASAPELRTAVVALSLGGLRRKTPWWR |
Ga0307313_100224973 | 3300028715 | Soil | MPDERLEVSVTFDERGYIGSAPELRQAVVALSLGGLR |
Ga0307307_101760171 | 3300028718 | Soil | MSGDRFEENVTFDAAHGYVASAPELRQPVVALSLGGLRRRIEI |
Ga0307317_101265821 | 3300028720 | Soil | MREERLEVSVTFDERHGYVASAPELRTAVVALSLGGLRRKIEALLLPAEVE |
Ga0307319_100413793 | 3300028722 | Soil | MRDERLEVSVTFDERRGYIGSAAELRSPVVALRLGGLRRKVEIALLP |
Ga0307320_100759242 | 3300028771 | Soil | MREERLEVSVTFDERHGYIGSAPELRSAVVALSLGGLRR |
Ga0307290_102228472 | 3300028791 | Soil | MREERLEVSVTFDERHGYVASAPELRSAVVALSLGGLRRRIEIAMLPDNVRVVLH |
Ga0307299_100770982 | 3300028793 | Soil | MREERLEVSVTFDERHGYVASAPELRSAVVALSLG |
Ga0307308_1000622210 | 3300028884 | Soil | MSGDRLEVNVTFDERGYIGSAPELRQLVVALSLGGLRRKIEALMVPDEPIVVLQ |
Ga0308201_103106521 | 3300031091 | Soil | MREERVEVSVTFDERHGYIGSAPELRSSVTALSLGGLRRKIE |
Ga0318538_104801521 | 3300031546 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDEVVVL |
Ga0307469_115760582 | 3300031720 | Hardwood Forest Soil | MPDERLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEI |
Ga0306918_112009371 | 3300031744 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPAVALSLGGLRRKVEIA |
Ga0306918_114934352 | 3300031744 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAM |
Ga0318537_101191371 | 3300031763 | Soil | MASEHRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAM |
Ga0318509_101975334 | 3300031768 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVDGVPRRGD |
Ga0318521_100681345 | 3300031770 | Soil | MRLDVTVTYAAERGYVASAPELRQPIVALSLGGLRRRIEIALLPDDVDVQLLLDGH |
Ga0318508_10910471 | 3300031780 | Soil | MASEHRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKIEIAMLPDEVVVLLSLD |
Ga0318508_12052672 | 3300031780 | Soil | MSKGGRFEVAVTFEERRGYVGSAPELCQPVVALSLGGLRRKVEIAMLPDDVIVTLNL |
Ga0318511_104898141 | 3300031845 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDEAVVLLSL |
Ga0310907_107390871 | 3300031847 | Soil | MRDERLEVSVTFDERHGYIASAAELRRAVVALSLGGLRRKDRDRDAA |
Ga0306925_107571172 | 3300031890 | Soil | MASEDRLTVAVTYDESRGYVGSASELRQPVVALSLGGLRRKVEIAMLPDEVVVLLSLDRTARLER |
Ga0306925_108204071 | 3300031890 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPAVALSLGGLRRKVEIAMLPD |
Ga0306925_115462732 | 3300031890 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAML |
Ga0306923_106257023 | 3300031910 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPAVALSLGGLRRKVEIAMLP |
Ga0310916_115053773 | 3300031942 | Soil | MASEDRLTVGVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDE |
Ga0310913_110262441 | 3300031945 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPD |
Ga0310910_108212103 | 3300031946 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPAVALSLGGLRRKVEIAMLPDEVVVLLS |
Ga0310909_105746883 | 3300031947 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEI |
Ga0318507_103668121 | 3300032025 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSL |
Ga0318559_103954511 | 3300032039 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRR |
Ga0318505_102308671 | 3300032060 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGL |
Ga0318505_105098301 | 3300032060 | Soil | MSKGGRFEVAVTFEERRGYVGSAPALCQPVVALSLGGLRRKVEIAMLPDDVIVTL |
Ga0318513_101140211 | 3300032065 | Soil | MASEHRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKIEIAMLPDEVVVLL |
Ga0306924_115897091 | 3300032076 | Soil | MSKGGRFEVAVTFEERRGYVGSAPELCQPVVALSLGGLRRKVEIAMLRDDVIVTLNLDRA |
Ga0306920_1019366651 | 3300032261 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDE |
Ga0306920_1029580703 | 3300032261 | Soil | MASEHRLTVAVTYDESRGYVGSAPELRQPVVALSLG |
Ga0306920_1031515463 | 3300032261 | Soil | MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRK |
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