Metagenome Family F103806

Basic Information
Family ID	F103806
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	48 residues
Representative Sequence	AKEMMEARVDAVFDSIRTDREFVALTRGADGRLPIPMKGMPATQATPNR
Number of Associated Samples	85
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	4.95 %
% of genes from short scaffolds (< 2000 bps)	4.95 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Most Common Taxonomy
Group	Unclassified (96.040 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (29.703 % of family members)
Environment Ontology (ENVO)	Unclassified (40.594 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.386 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.47% β-sheet: 0.00% Coil/Unstructured: 67.53%
Feature Viewer

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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00009	GTP_EFTU	13.86
PF02604	PhdYeFM_antitox	9.90
PF14384	BrnA_antitoxin	8.91
PF03551	PadR	5.94
PF03144	GTP_EFTU_D2	4.95
PF13620	CarboxypepD_reg	2.97
PF06769	YoeB_toxin	2.97
PF12681	Glyoxalase_2	2.97
PF00903	Glyoxalase	2.97
PF16277	DUF4926	1.98
PF12441	CopG_antitoxin	1.98
PF04365	BrnT_toxin	0.99
PF00730	HhH-GPD	0.99
PF00078	RVT_1	0.99
PF03483	B3_4	0.99
PF10576	EndIII_4Fe-2S	0.99
PF00515	TPR_1	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	9.90
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	9.90
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	5.94
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	5.94
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	5.94
COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	Defense mechanisms [V]	2.97
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.99
COG0177	Endonuclease III	Replication, recombination and repair [L]	0.99
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.99
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	0.99
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	0.99
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.99

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
All Organisms	root	All Organisms	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
cellular organisms	root	All Organisms → cellular organisms	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.97 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005167\|Ga0066672_10171989	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300005544\|Ga0070686_100964810	All Organisms → cellular organisms → Bacteria → Acidobacteria	697	Open in IMG/M
3300006797\|Ga0066659_10681594	All Organisms → cellular organisms → Bacteria → Acidobacteria	839	Open in IMG/M
3300015374\|Ga0132255_102552458	All Organisms → cellular organisms → Bacteria → Acidobacteria	781	Open in IMG/M
3300025941\|Ga0207711_10668079	Not Available	969	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.15%
Host-Associated	Host-Associated	14.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.16%
Plants	Host-Associated → Plants	14.85%
Aquatic	Environmental → Aquatic	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.95%
Sediment	Environmental → Aquatic → Sediment	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.33%
Loam	Environmental → Terrestrial → Soil → Loam	16.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.99%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.58%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	29.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.99%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.99%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2)	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_09014860	2170459003	Grass Soil	MEARVDAVFESIRTDREFVALTKDADGRLPIPMKGMPATQASPNR
Ga0062590_1015078311	3300004157	Soil	VDAVFESIRTDRDFIALTRGADGKLPIPMKGMPATMASPNR*
Ga0066672_101719894	3300005167	Soil	HFFQYERYQSVRAKEMMEARVDAVFDSIRTDREFVALTRGADGRLPIPMKGMPATQATPNR*
Ga0066680_107382782	3300005174	Soil	YERYQSVRAKEMMEARVDAVFDSIRTDREFVALTRNADGRLPIPMKGMPATQATPNR*
Ga0066679_107359362	3300005176	Soil	MMEARVDAVFDSIRTDREFVALTRGADGRLPIPMKGMPATQATPNR*
Ga0066684_109726811	3300005179	Soil	RVDAVFESIRTDGDFVALTHNADGRLPIPMKGMPATQATPNR*
Ga0066678_107700013	3300005181	Soil	SVRAKEMMEARVDAVFDSIRADQSFIALTKGADGRLPMPMKGMPASATPNR*
Ga0066671_104645512	3300005184	Soil	EARVDAVFNSIRTDREFVALTKGADGRLPIPMKGMPATQATPNR*
Ga0066671_105501532	3300005184	Soil	KEMMEARVDAVFDSIRTDREFVALTSGADGKLPIPVKGMPATQAGPKR*
Ga0070690_1001032574	3300005330	Switchgrass Rhizosphere	VREKEMMEARVDAVFESIRTDKEFVALTKDADGRLPIPMKGMPATQAQPNR*
Ga0070689_1003360121	3300005340	Switchgrass Rhizosphere	EMMEARVDAVFESIRTDRDFIALTRGADGKLPIPMKGMPATMASPNR*
Ga0070669_1014230352	3300005353	Switchgrass Rhizosphere	VREKEMMEARVDAVFDSIRFDQEFVALTRGADGKLPVPMKGMPATQAMPRQ*
Ga0070709_105490331	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	RAKEMMEARVDAVFESIRFDREFVALTNGADGRLPIPMKGMPATQATPNR*
Ga0070710_106253021	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VDAVFESIRTDKEFVALTKDADGRLPIPMKGMPATMATPNR*
Ga0070708_1003652701	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	EARVDAVFDSIRTDREFIALTEGADGKLPIPMKGMPGTGSRDNK*
Ga0070708_1012720061	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	RYQAVRTKEMMEARVDAVFDSIRTDREFVALTRGADGKLPVPMKGMPATQANPNR*
Ga0066686_110830431	3300005446	Soil	EARVDAVFDSIRTDREFVALTRGADGRLPIPMKGMPATQATPNRDVFYVNV
Ga0070699_1004641843	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	TKEMMEARVDAVFDSIRTDREFVALTRGADGKLPVPMKGMPATQANPNR*
Ga0070699_1018480981	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ARVDAVFDSIRSDREFIALTKGADGRLPIPMKGMPATQASPNR*
Ga0070697_1018593601	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VRAKEMMEARVDAVFDSLRADPGFIALTRNADGRLPMPLKGMSSTRPND*
Ga0070686_1009648102	3300005544	Switchgrass Rhizosphere	FQYERYQAVREKEMMEARVDAVFDSIRFDQEFVALTQGTDGKLPVPMKGMPATQAMPRQ*
Ga0070695_1010738251	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	KEMMEARVDAVFDSIRFDQEFVALTRGADGKLPVPMKGMPATQAMPRQ*
Ga0070696_1018996852	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MEARVDAVFDSIRTDRDFIALTKGADGKLPIPMKGMPATQASPNR*
Ga0070693_1010392492	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	RYHAVREKEMMEARVDAVFESIRTDREFVALTKDADGRLPIPMKGMPATQAQPNR*
Ga0066695_101722944	3300005553	Soil	FDSIRTDREFVALTRGADGRLPIPMKGMPATQATPNR*
Ga0066698_110339462	3300005558	Soil	VRAKEMMEARVDAVFESIRTDREFIALTRGADGKLPIPMKGMPATQATPNR*
Ga0068864_1020350112	3300005618	Switchgrass Rhizosphere	IRTDRDFIALTRGADGKLPIPMKGMSATMASPNR*
Ga0068866_108141741	3300005718	Miscanthus Rhizosphere	VDAVFDSIRFDHEFVALTKGADGKLPIPMKGMPATQATPNR*
Ga0066903_1008739833	3300005764	Tropical Forest Soil	AVFESIRADRDFVALTRGADGRLPIPMKGMPATMATPNR*
Ga0066652_1012019361	3300006046	Soil	DSIRTDREFVALTRGADGRLPIPMKGMPATQATPNR*
Ga0070716_1000349485	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	YERYQSVRAKEMMEARVDAVFESIRFDREFVALTNGADGRLPIPMKGMPATQATPNR*
Ga0066665_112488102	3300006796	Soil	AVFDSIRSDRQFIALTKGADGRLPIPMKGMPATQASPNR*
Ga0066659_106815942	3300006797	Soil	FFQYERYQSVRAKEMMEARVDAVFDSIRSDRDFVALTRGADGRLPIPMKGMPATQATPNR
Ga0066660_102787422	3300006800	Soil	VRAKEMMEARVDAVFNSIRTDGEFVALTKGADGRLPIPMKGMPATQATPNR*
Ga0075425_1012116651	3300006854	Populus Rhizosphere	VRAKEMMEARVDAVFESIRTDREFVALTKGADGRLPIPMKGMPATQAMPNR*
Ga0075426_107199202	3300006903	Populus Rhizosphere	AKEMMEARVDAVFDSIRTDREFVALTRGADGRLPIPMKGMPATQATPNR*
Ga0075424_1013395813	3300006904	Populus Rhizosphere	AVFESIRTDKEFVALTKDADGRLPIPMKGMPATQAQPNR*
Ga0097620_1000139291	3300006931	Switchgrass Rhizosphere	KEMMEARVDAVFESIRTDRDFIALTRGADGKLPIPMKGMPATMASPNR*
Ga0079218_133118371	3300007004	Agricultural Soil	EMMEARVDAMFDSIRFDRHFIALTRNADGKLPVPMKGMPATQAMPHR*
Ga0066710_1002427446	3300009012	Grasslands Soil	SVVAVFATISTDHEFIALTLGVDGKLPIPMKGMPATKATPNR
Ga0066710_1012822722	3300009012	Grasslands Soil	YQSVRAKEMMEARVDAVFESIRTDREFVALTRNADGRLPIPIKGMPATQATPNR
Ga0066710_1045571331	3300009012	Grasslands Soil	VHEKEMMEARVDAVFDSIRAEHAYIALTSGADGKLPIPMKGMPASQASPNR
Ga0099829_107412551	3300009038	Vadose Zone Soil	RAKEMMEARVDAVFDSIRTDREFIALTKGADGRLPIPMKGMGSGSRENK*
Ga0099829_113323831	3300009038	Vadose Zone Soil	RAKEMMEARVDAVFDSIRTDREFIALTKGADGRLPIPMKGMPATQASPNR*
Ga0099830_110868991	3300009088	Vadose Zone Soil	FKYERYSSVRAKEMMEARVDAVFDSIRTDREFVALTRGADGRLPIPMKGMPATLASPNR*
Ga0099828_115750492	3300009089	Vadose Zone Soil	RAKEMMEARVDAVFDSIRTDREFIALTKGADGKLPIPMKGMPATQASPNR*
Ga0066709_1011141211	3300009137	Grasslands Soil	KEMMEACVDAVFDSIRADHAFIALTSGADGKLPIPMKGMPASQASPNR*
Ga0066709_1011571241	3300009137	Grasslands Soil	DAVFDSIRTDREFVALTRGADGKLPIPMKGMPATQATPNR*
Ga0099792_101875054	3300009143	Vadose Zone Soil	KEMMEARVDAVFESIRTDREFIALTNGADGKLPIPMKGMPATQASPNR*
Ga0105243_109052554	3300009148	Miscanthus Rhizosphere	EMMEARVDAVFESIRTDREFVALTKDADGRLPIPMKGMPATQAGTPNR*
Ga0075423_106935021	3300009162	Populus Rhizosphere	EMMEARVDAVFDSIRFDQEFVALTRGADGKLPVPMKGMPATQAMPRQ*
Ga0126309_111543221	3300010039	Serpentine Soil	KEMMEARVDAMFDSIRFDRDFIALTHGADGKLPVPMKGMPATQAMPHR*
Ga0126384_107349102	3300010046	Tropical Forest Soil	YERYQAVREKEMMEARVDAVFDSIRFDQEFVALTRGADGKLPVPMKGMPATQAMPRQ*
Ga0099796_100838663	3300010159	Vadose Zone Soil	SIRTDREFVALTRNADGRLPIPMKGMPATQASPNR*
Ga0134109_101901401	3300010320	Grasslands Soil	VRAKEMMEARVDAVFDSIRSDKEFVALTKNADGRLPIPMKGMPATQANPNR*
Ga0126378_111395141	3300010361	Tropical Forest Soil	KEMMEARVDAVFESIRTDREFVALTKDADGRLPIPMKGMPATQASPNR*
Ga0126379_100788973	3300010366	Tropical Forest Soil	MMEARVDAVFESIRTDREFVALTKDADGRLPIPMKGMPATQASPNR*
Ga0126379_138778161	3300010366	Tropical Forest Soil	EARVDAVFESIRTDRDFVALTKNADGRLPIPMKGMPATQASPNR*
Ga0105239_125673841	3300010375	Corn Rhizosphere	ARVDAVFESIRTDREFGALTKHAEGRLPIPMKGMPATQATPNR*
Ga0134124_1000958511	3300010397	Terrestrial Soil	YERYQAVREKEMMEARVDAVFDSIRFDREFVALTRGADGKLPVPMKGMPATQATPR*
Ga0134122_107094432	3300010400	Terrestrial Soil	VREKEMMEARVDAVFDSIRFDHEFVALTKGADGKLPIPMKGMPATQATPNR*
Ga0134122_113805601	3300010400	Terrestrial Soil	KEMMEARVDAVFNSIRTDGEFVALTKDADGRLPIPMKGMPATMAQPNR*
Ga0137393_109322461	3300011271	Vadose Zone Soil	KEMMEARVDAVFDSLRTDSAFLALTSGADGRLPMPMKGVAEPARMNR*
Ga0137443_12214452	3300011433	Soil	EKEMMEARVDAVFDSIRFDKDFIALTSGADGKLPVPMKGMPATQASPNR*
Ga0137389_117425772	3300012096	Vadose Zone Soil	EARVDAVFDSIRTDREFIALTKGADGRLPIPMKGMPATQASPNR*
Ga0137388_106747473	3300012189	Vadose Zone Soil	RVDAVFDSIRTDREFIALTKGADGKLPIPMKGMPATQASPNR*
Ga0137388_119992031	3300012189	Vadose Zone Soil	RAKEMMEARVDAVFDSIRSDREFIALTKGADGRLPIPMKGMPATQASPNR*
Ga0137399_116989712	3300012203	Vadose Zone Soil	VFDSIRADHAFIALTSGADGKLPIPMKGMPASQASPNR*
Ga0137380_105059381	3300012206	Vadose Zone Soil	ARVDAVFEFIRTDRKFVALTKGADGRLPIPMKGMPATQATPNR*
Ga0137376_115836881	3300012208	Vadose Zone Soil	DAVFESIRTDREFVALTHDADGRLPIPMKGMPATQATPNR*
Ga0137378_102069712	3300012210	Vadose Zone Soil	VRAKEMMEARVDAVFESIRTDREFVALTKGADGRLPIPMKGMSATQATPIR*
Ga0137377_101319404	3300012211	Vadose Zone Soil	YQAVRAKEMMEARVDAVFDSIRTDREFVALTRGADGKLPIPMKGMPATQATPNR*
Ga0137377_111762851	3300012211	Vadose Zone Soil	FFQYERYGAVREKEMMEARVDAVFDSIRADHAFIALTSGADGKLPIPMKGMPASQASPNR
Ga0137372_101103551	3300012350	Vadose Zone Soil	YQSVRAKEMMEARVDAVFDSIRSDQAFIALTRGADGRLPMPMKGMGTR*
Ga0137372_105786911	3300012350	Vadose Zone Soil	KEMMEARVDAVFESIRTDREFVALTRNADGRLPIPMKGMPATQATPNR*
Ga0137372_110039972	3300012350	Vadose Zone Soil	DAVFDSIRTDREFVALTSGADGRLPIPMKGMPATQATPNR*
Ga0137369_108370241	3300012355	Vadose Zone Soil	KEMMEARVDAVFESIRSDQAFMALTRGADGKLPMPMKGMPASASPNR*
Ga0137371_107324772	3300012356	Vadose Zone Soil	FDSIRTDREFVALTRGADGRLPIPMKGMPATQASPNR*
Ga0137368_101105391	3300012358	Vadose Zone Soil	EARVDAVFDSIRTDREFIALTRGADGRLPIPMKGMPATQATPNR*
Ga0137398_112643881	3300012683	Vadose Zone Soil	IRSDRAFIALTNGADGKLPIPMKGMPATQASPNR*
Ga0137397_101944712	3300012685	Vadose Zone Soil	YERYQAVREKEMMEARVDAVFDSIRTDRAFIALTSGADGKLPIPMKGMPASQASPNR*
Ga0137397_111874092	3300012685	Vadose Zone Soil	RVDAVFDSLRTDRAFIALTNGADGKLPIPMKGMPATQASPNR*
Ga0137419_119243511	3300012925	Vadose Zone Soil	KKEMMEARVDAVFDSIRTDHAFIALTSGADGKLPIPMKGMPASQASPNR*
Ga0137416_117590672	3300012927	Vadose Zone Soil	YQAVRSKEMMEARVDAVFNSLRQDSAFLALTRDVDGRLMMPMKGMPATQATPNR*
Ga0137404_116273712	3300012929	Vadose Zone Soil	YQSVRAKEMMEARVDAVFESIRTDREFVALTRNADGRLPIPMKGMPATQASPNR*
Ga0137407_104448551	3300012930	Vadose Zone Soil	RHFFQYERYRPVREKEMMEARVDAVFESIRTAREFIALTNGADGKLPIPMKGMPATQASPNR*
Ga0137407_121669941	3300012930	Vadose Zone Soil	KEMMEARVDAVFDSIRADHAFIALTSGADGKLPIPMKGMPASQASPNR*
Ga0157380_106071934	3300014326	Switchgrass Rhizosphere	MEARVDAVFESIRTDRDFLALTKGADGKLPIPMKGMPATMASPNR*
Ga0132255_1001499957	3300015374	Arabidopsis Rhizosphere	VDAVFDSVRFDQEFIALTKGADGKLPVPMKGMPATQAMPNQ*
Ga0132255_1025524582	3300015374	Arabidopsis Rhizosphere	HFFQYERYQAVRTKEMMEARVDAVFESIRTDRDFIALTRGADGKLPIPMKGMPATMASPNR*
Ga0182033_107199161	3300016319	Soil	QSVRAKEMMEARVDAVFESIRTDREFVALTSDADGRLPIPMKGMPASQASPNR
Ga0190272_130663512	3300018429	Soil	VDAMFDSIRFDRDFIALTHGADGKLPVPMKGMPATQAMPHR
Ga0193729_10041686	3300019887	Soil	KEMMEARVDAVFDSIRTDREFVALTKNADGRLPIPMKGMPATQASPNR
Ga0193724_10637371	3300020062	Soil	QYERYRAVREKEMMEARVDAVFESIRTDREFVALTNGADGKLPIPMKGMPATQASPNR
Ga0210404_103376462	3300021088	Soil	YNSVRAKEMMEARVDAVFDSIRTDREFIELTKDADGRLPIPMKGMPATQASPHR
Ga0207684_114544892	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	FESIRTDREFVALTSGADGKLPIPMKGMPATQASPNR
Ga0207687_114756361	3300025927	Miscanthus Rhizosphere	VRTKEMMEARVDAVFESIRTDRDFIALTRGADGKLPIPMKGMPATMASPNR
Ga0207670_110949821	3300025936	Switchgrass Rhizosphere	ARVDAVFDSIRFDQEFVALTQGTDGKLPVPMKGMPATQAMPRQ
Ga0207711_106680791	3300025941	Switchgrass Rhizosphere	RRHFFQYERYQAVRTKEMMEARVDAVFESIRTDRDFIALTRGADGKLPIPMKGMPATMASPNR
Ga0307469_101537991	3300031720	Hardwood Forest Soil	MMEARVDAVFESIRTDREFIALTRGADGKLPIPMKGMPATQATPNR
Ga0307472_1022382452	3300032205	Hardwood Forest Soil	ERYQAVRTKEMMEARVDAVFESIRTDRDFVALTRGADGKLPIPMKGMPATMASPNR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103806

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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