Metagenome / Metatranscriptome Family F103838

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103838
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	74 residues
Representative Sequence	MVQVDPWGKAAECERAMEIVADPERRVVLSSLRSVWVALGNKRSFLEAPEQAGQLSTIAQIHTELLSVCKNAMH
Number of Associated Samples	73
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.34 %
% of genes near scaffold ends (potentially truncated)	30.69 %
% of genes from short scaffolds (< 2000 bps)	84.16 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.198 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.772 % of family members)
Environment Ontology (ENVO)	Unclassified (34.653 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.376 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.88% β-sheet: 0.00% Coil/Unstructured: 44.12%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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SCOP family	SCOP domain	Representative PDB	TM-score
a.29.13.1: Bacillus cereus metalloprotein-like	d3d19a1	3d19	0.91122
a.29.13.1: Bacillus cereus metalloprotein-like	d3dbya2	3dby	0.86381
a.29.13.1: Bacillus cereus metalloprotein-like	d3dbya1	3dby	0.85434
a.29.13.1: Bacillus cereus metalloprotein-like	d3d19a2	3d19	0.85086
f.13.1.0: automated matches	d4jq6a_	4jq6	0.81229

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF13467	RHH_4	56.44
PF02604	PhdYeFM_antitox	1.98
PF00550	PP-binding	0.99
PF03401	TctC	0.99
PF01436	NHL	0.99
PF01050	MannoseP_isomer	0.99
PF13412	HTH_24	0.99
PF00816	Histone_HNS	0.99
PF03385	STELLO	0.99
PF13699	DUF4157	0.99
PF01593	Amino_oxidase	0.99
PF09084	NMT1	0.99
PF07045	DUF1330	0.99
PF00313	CSD	0.99
PF00239	Resolvase	0.99
PF04828	GFA	0.99
PF00990	GGDEF	0.99
PF00857	Isochorismatase	0.99
PF02719	Polysacc_synt_2	0.99
PF01527	HTH_Tnp_1	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0451	Nucleoside-diphosphate-sugar epimerase	Cell wall/membrane/envelope biogenesis [M]	1.98
COG0702	Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains	General function prediction only [R]	1.98
COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	Cell wall/membrane/envelope biogenesis [M]	1.98
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	1.98
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	1.98
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.99
COG1087	UDP-glucose 4-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.99
COG1088	dTDP-D-glucose 4,6-dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.99
COG1089	GDP-D-mannose dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.99
COG1091	dTDP-4-dehydrorhamnose reductase	Cell wall/membrane/envelope biogenesis [M]	0.99
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.99
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.99
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.99
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.99
COG2916	DNA-binding protein H-NS	Transcription [K]	0.99
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.99
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.99
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.99
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.20 %
Unclassified	root	N/A	19.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.20 %
Unclassified	root	N/A	19.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.20 %
Unclassified	root	N/A	19.80 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	63.37 %
Unclassified	root	N/A	19.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.80 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.87 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.80 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.97 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.99 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.80 %
Burkholderiales bacterium GJ-E10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium GJ-E10	0.99 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.99 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.99 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.80 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.99 %
Burkholderiales bacterium GJ-E10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium GJ-E10	0.99 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.99 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.80 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.99 %
Burkholderiales bacterium GJ-E10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium GJ-E10	0.99 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.99 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100466444	Not Available	893	Open in IMG/M
3300001661\|JGI12053J15887_10041348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2588	Open in IMG/M
3300001661\|JGI12053J15887_10128346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1350	Open in IMG/M
3300004631\|Ga0058899_11434459	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300005165\|Ga0066869_10020225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	998	Open in IMG/M
3300005332\|Ga0066388_101053932	Not Available	1370	Open in IMG/M
3300005332\|Ga0066388_102923422	All Organisms → cellular organisms → Bacteria → Proteobacteria	873	Open in IMG/M
3300005332\|Ga0066388_104892414	Not Available	681	Open in IMG/M
3300005332\|Ga0066388_105662934	Not Available	632	Open in IMG/M
3300005332\|Ga0066388_106130648	All Organisms → cellular organisms → Bacteria → Proteobacteria	607	Open in IMG/M
3300005332\|Ga0066388_108410052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	514	Open in IMG/M
3300005764\|Ga0066903_100238013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2788	Open in IMG/M
3300005764\|Ga0066903_100312173	All Organisms → cellular organisms → Bacteria → Proteobacteria	2501	Open in IMG/M
3300005764\|Ga0066903_100756143	All Organisms → cellular organisms → Bacteria	1727	Open in IMG/M
3300005764\|Ga0066903_103087186	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300005764\|Ga0066903_109066353	Not Available	503	Open in IMG/M
3300005833\|Ga0074472_10646234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4401	Open in IMG/M
3300006047\|Ga0075024_100362993	All Organisms → cellular organisms → Bacteria → Proteobacteria	727	Open in IMG/M
3300006050\|Ga0075028_100118760	All Organisms → cellular organisms → Bacteria → Proteobacteria	1368	Open in IMG/M
3300006050\|Ga0075028_100316384	Not Available	874	Open in IMG/M
3300006172\|Ga0075018_10072387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1480	Open in IMG/M
3300006176\|Ga0070765_100267577	All Organisms → cellular organisms → Bacteria → Proteobacteria	1572	Open in IMG/M
3300007788\|Ga0099795_10124895	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300009143\|Ga0099792_10150857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1280	Open in IMG/M
3300009143\|Ga0099792_10423731	Not Available	819	Open in IMG/M
3300009143\|Ga0099792_10757659	All Organisms → cellular organisms → Bacteria → Proteobacteria	633	Open in IMG/M
3300010048\|Ga0126373_10064428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3293	Open in IMG/M
3300010048\|Ga0126373_10695144	All Organisms → cellular organisms → Bacteria → Proteobacteria	1075	Open in IMG/M
3300010159\|Ga0099796_10009385	All Organisms → cellular organisms → Bacteria → Proteobacteria	2647	Open in IMG/M
3300010360\|Ga0126372_10760253	All Organisms → cellular organisms → Bacteria → Proteobacteria	954	Open in IMG/M
3300010361\|Ga0126378_13390034	Not Available	506	Open in IMG/M
3300010376\|Ga0126381_100251050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2397	Open in IMG/M
3300010376\|Ga0126381_101412804	All Organisms → cellular organisms → Bacteria → Proteobacteria	1006	Open in IMG/M
3300010376\|Ga0126381_102000047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium GJ-E10	835	Open in IMG/M
3300010376\|Ga0126381_102071264	All Organisms → cellular organisms → Bacteria → Proteobacteria	819	Open in IMG/M
3300011120\|Ga0150983_12378251	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300012200\|Ga0137382_10863132	All Organisms → cellular organisms → Bacteria → Proteobacteria	653	Open in IMG/M
3300012212\|Ga0150985_118634649	All Organisms → cellular organisms → Bacteria → Proteobacteria	776	Open in IMG/M
3300012361\|Ga0137360_10823560	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300012362\|Ga0137361_10480106	All Organisms → cellular organisms → Bacteria → Proteobacteria	1142	Open in IMG/M
3300012683\|Ga0137398_10492519	All Organisms → cellular organisms → Bacteria → Proteobacteria	842	Open in IMG/M
3300012927\|Ga0137416_10514881	Not Available	1032	Open in IMG/M
3300012971\|Ga0126369_12452197	All Organisms → cellular organisms → Bacteria → Proteobacteria	607	Open in IMG/M
3300015371\|Ga0132258_10239126	All Organisms → cellular organisms → Bacteria	4431	Open in IMG/M
3300015371\|Ga0132258_11038726	Not Available	2071	Open in IMG/M
3300015373\|Ga0132257_100121040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3040	Open in IMG/M
3300016270\|Ga0182036_10931785	Not Available	713	Open in IMG/M
3300016319\|Ga0182033_10131554	All Organisms → cellular organisms → Bacteria → Proteobacteria	1901	Open in IMG/M
3300016341\|Ga0182035_11315973	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300016371\|Ga0182034_10354009	All Organisms → cellular organisms → Bacteria → Proteobacteria	1193	Open in IMG/M
3300016404\|Ga0182037_10101460	All Organisms → cellular organisms → Bacteria → Proteobacteria	2072	Open in IMG/M
3300016422\|Ga0182039_11864701	Not Available	552	Open in IMG/M
3300016445\|Ga0182038_11108053	Not Available	704	Open in IMG/M
3300017973\|Ga0187780_10641468	All Organisms → cellular organisms → Bacteria → Proteobacteria	764	Open in IMG/M
3300017975\|Ga0187782_10818043	All Organisms → cellular organisms → Bacteria → Proteobacteria	721	Open in IMG/M
3300018085\|Ga0187772_10824971	Not Available	671	Open in IMG/M
3300020140\|Ga0179590_1199054	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300020580\|Ga0210403_10076473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2692	Open in IMG/M
3300020580\|Ga0210403_10670684	All Organisms → cellular organisms → Bacteria → Proteobacteria	833	Open in IMG/M
3300020581\|Ga0210399_11103782	Not Available	634	Open in IMG/M
3300021170\|Ga0210400_10293780	All Organisms → cellular organisms → Bacteria → Proteobacteria	1333	Open in IMG/M
3300021432\|Ga0210384_11103005	All Organisms → cellular organisms → Bacteria → Proteobacteria	697	Open in IMG/M
3300021478\|Ga0210402_10210832	All Organisms → cellular organisms → Bacteria → Proteobacteria	1787	Open in IMG/M
3300021478\|Ga0210402_10572403	All Organisms → cellular organisms → Bacteria → Proteobacteria	1048	Open in IMG/M
3300021560\|Ga0126371_10017386	All Organisms → cellular organisms → Bacteria → Proteobacteria	6600	Open in IMG/M
3300021560\|Ga0126371_10033394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4836	Open in IMG/M
3300021560\|Ga0126371_10664516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1190	Open in IMG/M
3300022525\|Ga0242656_1097794	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300022527\|Ga0242664_1040498	All Organisms → cellular organisms → Bacteria → Proteobacteria	819	Open in IMG/M
3300022527\|Ga0242664_1044544	All Organisms → cellular organisms → Bacteria → Proteobacteria	792	Open in IMG/M
3300022722\|Ga0242657_1092462	All Organisms → cellular organisms → Bacteria → Proteobacteria	734	Open in IMG/M
3300022726\|Ga0242654_10115013	All Organisms → cellular organisms → Bacteria → Proteobacteria	862	Open in IMG/M
3300024288\|Ga0179589_10242660	All Organisms → cellular organisms → Bacteria → Proteobacteria	798	Open in IMG/M
3300026356\|Ga0257150_1050210	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
3300026557\|Ga0179587_10924153	Not Available	575	Open in IMG/M
3300027591\|Ga0209733_1039120	All Organisms → cellular organisms → Bacteria → Proteobacteria	1269	Open in IMG/M
3300027894\|Ga0209068_10044955	All Organisms → cellular organisms → Bacteria	2228	Open in IMG/M
3300027903\|Ga0209488_10023520	All Organisms → cellular organisms → Bacteria	4473	Open in IMG/M
3300027903\|Ga0209488_10178736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1602	Open in IMG/M
3300027915\|Ga0209069_10695346	All Organisms → cellular organisms → Bacteria → Proteobacteria	596	Open in IMG/M
3300028536\|Ga0137415_10221935	All Organisms → cellular organisms → Bacteria	1704	Open in IMG/M
3300029636\|Ga0222749_10063542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1661	Open in IMG/M
3300029636\|Ga0222749_10306119	All Organisms → cellular organisms → Bacteria → Proteobacteria	823	Open in IMG/M
3300031015\|Ga0138298_1368544	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300031545\|Ga0318541_10477521	All Organisms → cellular organisms → Bacteria → Proteobacteria	697	Open in IMG/M
3300031724\|Ga0318500_10483089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	622	Open in IMG/M
3300031744\|Ga0306918_10512281	All Organisms → cellular organisms → Bacteria → Proteobacteria	940	Open in IMG/M
3300031781\|Ga0318547_10764682	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300031823\|Ga0307478_11059419	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300031890\|Ga0306925_10545007	All Organisms → cellular organisms → Bacteria → Proteobacteria	1231	Open in IMG/M
3300031910\|Ga0306923_10421368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1517	Open in IMG/M
3300031942\|Ga0310916_11030886	Not Available	686	Open in IMG/M
3300031942\|Ga0310916_11419291	Not Available	568	Open in IMG/M
3300031981\|Ga0318531_10447685	Not Available	585	Open in IMG/M
3300032041\|Ga0318549_10317873	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300032076\|Ga0306924_12510078	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300032261\|Ga0306920_100625911	All Organisms → cellular organisms → Bacteria → Proteobacteria	1591	Open in IMG/M
3300032261\|Ga0306920_100626072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	1591	Open in IMG/M
3300032261\|Ga0306920_104041909	All Organisms → cellular organisms → Bacteria → Proteobacteria	532	Open in IMG/M
3300032756\|Ga0315742_13293400	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300032893\|Ga0335069_11571789	Not Available	706	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.04%
Host-Associated	Host-Associated	3.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.11%
Aquatic	Environmental → Aquatic	6.93%
Plants	Host-Associated → Plants	3.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.11%
Sediment	Environmental → Aquatic → Sediment	6.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.32%
Loam	Environmental → Terrestrial → Soil → Loam	16.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.95%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.97%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.99%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031015	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1004664441	3300000364	Soil	MSHVDPWDKVAECESAIKIVADPERRVVLDRLRTLWIALGNNQSFDRVERAGQLCTIAQIHAELMLTCRNAMH*
JGI12053J15887_100413485	3300001661	Forest Soil	MSLVDPWGKAAECERAIAVVADPERRVVLNSLRSLWIALGNEGAFFDGLERADQLSTIAQIHVELMSVCRNAMH*
JGI12053J15887_101283462	3300001661	Forest Soil	MFQLDPWGKAAECERAIELVADPDRRDVLNSLRSVWIALGKKQSFFDGPGREGQLYIIAQIHTELMSVCRYAMH*
Ga0058899_114344591	3300004631	Forest Soil	QVDPWGKAAECERAMQVVADPERRVVLSSLRSVWVALGNKRSFLESPDQAGQLSNIAQIHSELMSACKDAMH*
Ga0066869_100202253	3300005165	Soil	ETGTMSHVDPWDKAAECESAIRIVADPERRLVLDRLRTLWIALGNRQSFDRFDRAGQLSTIAQIHTELMLTFRNAMH*
Ga0066388_1010539323	3300005332	Tropical Forest Soil	MSEVDPWGKAAECQRAMEIIADPERRVVLSSLRNLWIALGNAPSSFDRFERAGQLSMIAQIHKDLISASRNAMH*
Ga0066388_1029234222	3300005332	Tropical Forest Soil	MVDPWDKAAECERAIEIVADPERRVVLSSLRSVWLALGHKQAHFDRAARAGPLSAIAQIHTELMSVCRHAMH*
Ga0066388_1048924143	3300005332	Tropical Forest Soil	MSEIDPLGKAAECERAIEIVADPERRLVLSSLRNLWIALDNAPSSFDRFERAGQLVTIAQIHNELISASRNAMH*
Ga0066388_1056629342	3300005332	Tropical Forest Soil	MLRLDPLGKAAECERAIEIVADPERRVVLSSLRSVWIALANKERLLRSSDPAGEVSTIAQIHAELMSGCRNAMH*
Ga0066388_1061306481	3300005332	Tropical Forest Soil	RMSKVDPWGKAAECERAIEVVADPERRDVLNKLRNLWIALGNAPSSFDRFERAGQLFTIAQIHNELISAYRSAMH*
Ga0066388_1084100522	3300005332	Tropical Forest Soil	MLDVDPWRKAAECERAIEVVADPERRVVLSSLRTLWIALGNRRSLFEGAERAGQLSTIAQIHAELMSACRNAMH*
Ga0066903_1002380134	3300005764	Tropical Forest Soil	MSKVDPWGKAAECERAIEVVADPERRDVLNKLRNLWIALGNAPSSFDRFERAGQLFTIAQIHNELISAYRSAMH*
Ga0066903_1003121732	3300005764	Tropical Forest Soil	MSEVDPWGKAAECQRAMEIIADPERRVVLSSLRNLWIELGNAPSSFDRFERAGQLFMIAQIHNELISASRNAMH*
Ga0066903_1007561433	3300005764	Tropical Forest Soil	MSQVDPWGKAAECQRAMEIIADPERRIVLSSLRSLWIELGNAPSSFDRFERAGQLFTIAQIHHELIAACRNAMH*
Ga0066903_1030871862	3300005764	Tropical Forest Soil	MLLVNPWDKAAECARAIKVVADPERRIVLDRLRSLWIALGKEQSFVGAPERAGQLSTITQIHVELMSTCRNAMH*
Ga0066903_1090663531	3300005764	Tropical Forest Soil	MSKVDPWGKAAECQRAIEIVADPERRVVLDSLRNLWIALGNAPSSIDRFERAGQLLTIAQIHNELISACRSAMH*
Ga0074472_106462346	3300005833	Sediment (Intertidal)	MSELDPWGKAAECERAIEIVADPERRVVLHSLRSLWVALGNQPSCFERLQRAGPLSTIAQIHTELLSVCRNAMH*
Ga0075024_1003629931	3300006047	Watersheds	MLQLDPWGKAAECERAIEIVADPDRRIVLSSLRSVWITLGNNQSFLDEPERVGQLSNIAQIHTELISDCKSAMH*
Ga0075028_1001187602	3300006050	Watersheds	MLQLDPWGKAAECERAIEIVADPDRRIVLSSLRSVWITLGNNQSFLDEPERVGQLSTIAQIHTELISDCKSAMH*
Ga0075028_1003163842	3300006050	Watersheds	MVQVDPWGKAAECERAMEIVADPECRVILCSLRSVWITLGNNQSFLDAPERVGQLSNIAQIHTELMSVYKSAMH*
Ga0075018_100723872	3300006172	Watersheds	MVQVDAWGKAAECERAMQIVADPERRIVLSSLRSVWVALGNNLSFLETHKQAAQLSNIAQIHTELMSVCKNAMH*
Ga0070765_1002675773	3300006176	Soil	MAIALVDPWGKAAECERAIEVVADPERRVVLNSLRSLWIALGSEQSSFDGRELAGQLSTIAQIHTELMSVCRDAMH*
Ga0099795_101248952	3300007788	Vadose Zone Soil	MLEVDPWGKAAECERAIEIVADPERRVVLNSLRSLWLALGSQPSFKGLERAGRLSTIAQIHIELMSVCRSAMH*
Ga0099792_101508574	3300009143	Vadose Zone Soil	MLEVDPWGKAAECERAIEIVADPERRVVLNSLRSLWLALGSQPSFKGLERAGRLSTIAQIHIELMSVCRSAMR*
Ga0099792_104237311	3300009143	Vadose Zone Soil	MLKVDPWGKAAECERAIEIVADPERRVVLNSLRSLWLALGNEQPFSDGLKRTRQLSTIAQIHVEL
Ga0099792_107576591	3300009143	Vadose Zone Soil	MLEVDPWAKAAECERAIEIVADPERRVVLNSLRSLWLALGSQPSFKELERAGRLSTIAQIHIELMSVCRSAMH*
Ga0126373_100644284	3300010048	Tropical Forest Soil	GGVMIQVDPLGKAAECERAIEIVADPERRVVLSSLRSVWIALANKERLLRSSDPAGEVSTIAQIHAELMSGCRNAMH*
Ga0126373_106951442	3300010048	Tropical Forest Soil	MSEQYGEGAMVRVDPWDKAAECERAIAIVADPERRVVLSRLRGVWLALGNKQGLFHRPAQFGALATIAQIHTELMSVCRHAMH*
Ga0099796_100093852	3300010159	Vadose Zone Soil	MLEVDPWGKAAECERAIEIVADPERRVVLNSLRSLWLALGSQPSFKELERAGRLSTIAQIHIELMSVCRSAMH*
Ga0126372_107602531	3300010360	Tropical Forest Soil	MEIIADPERRVVLSSLRSLWIELGNAPSSFDRFERAGQLFTIAQIHHELIAACR
Ga0126378_133900341	3300010361	Tropical Forest Soil	LGKAAECERAIEIVADPERRVVLSSLRSVWIALANKERFLRSSDPAGEVSTIAQIHAELMSVCRNAMH*
Ga0126381_1002510503	3300010376	Tropical Forest Soil	MLQVDPWSKAAECEHAIEIVADPERRVVLNSLRSVWIALGNKQASSETPGRVGHLSTIAQIHSELMTVCRHAMH*
Ga0126381_1014128042	3300010376	Tropical Forest Soil	MGDNICGNVVGAGTMIQLDPWGKAAECARAIEIIADPERRVVLSSLRNVWIALGNKRSLFDAPEQAGQLSTIAQIHTELMSAYRMAMH*
Ga0126381_1020000473	3300010376	Tropical Forest Soil	MVDPWDKAAECERAIEIVADPERRVVLSSLRSVWLALGHKQAHFDRAARAGPVSAIAQIHTEL
Ga0126381_1020712641	3300010376	Tropical Forest Soil	MMHVDPWGKAAECERAMAIVADPERRVILSKLRSVWVALGNKQSFLDASERAVPLSTIAQIHAELISGCKNAMH*
Ga0150983_123782511	3300011120	Forest Soil	PVLGGGAMLQVDPWGKAAECERAMQVVADPERRVVLSSLRSVWVALGNKRSFLESPDQAGQLSNIAQIHSELMSACKDAMH*
Ga0137382_108631322	3300012200	Vadose Zone Soil	MLQLDPWGKAAECERAIELVADPERRVVLNSLRSVWIALGDKRSFFDGPGRAGQLSTIAQIHSELMSVCRHAMH*
Ga0150985_1186346492	3300012212	Avena Fatua Rhizosphere	MLEVDPWGKAAECERAIEIIADPERRVVLDSLRSLWLALGSQPLNGLERAGRLSTIAQIHIELMAVCRSAMH*
Ga0137360_108235601	3300012361	Vadose Zone Soil	MSLVDPWGKVAECERAIEVVADPERRVVLNSLRTLWIALGNERSYFDGLERADQLSTIAQIHIELMSVCRSAMH*
Ga0137361_104801062	3300012362	Vadose Zone Soil	MLEVDPWGKAAESERAIEIVADPERRVVLNSLRSLWLALGSQPSFKGLERAGRLSTIAQIHIELMSVCRSAMH*
Ga0137398_104925192	3300012683	Vadose Zone Soil	GKAAECERAIEIVADPERRVVLNSLRSQWLALGSQPSFKGLERAGRLSTIAQIHIELMSVCRSAMH*
Ga0137416_105148813	3300012927	Vadose Zone Soil	MVWVDPWGKAAKCERAMEIVADPERRFVLSSLRSVWVALGNRQSFLGAPARAGQLSTIAQIHTDLKENRWRSLE*
Ga0126369_124521972	3300012971	Tropical Forest Soil	VNPWDKAAECARAIKVVADPERRIVLDRLRSLWIALGKEQSFVGAPERAGQLSTITQIHVELMATCRNAMH*
Ga0132258_102391265	3300015371	Arabidopsis Rhizosphere	MSHVDPWDKAAECESAIKIVADPERRVVLDGLRTLWIALGNRQSFDRAERAGQFCTIVQIHAELMLTCRNAMH*
Ga0132258_110387262	3300015371	Arabidopsis Rhizosphere	MSHVDPWDKVAECESAIKIVADPERRVVLDRLRTLWIALGNNQSVDRVERAGHLCTIAQIHAELMLTCRNAMH*
Ga0132257_1001210402	3300015373	Arabidopsis Rhizosphere	MSHVDPWDKAAECESAIKIVADPERRVVLDGLRTLWIALGNRRFFDRAERAGQFCTIVQIHAELMLTCRNAMH*
Ga0182036_109317852	3300016270	Soil	MLRADPWDKAAECERAIEVVADPERRVVLEKLRSLWIALGNEQSFVGAAERAGQLSAITQIHAELMSACRNAMH
Ga0182033_101315544	3300016319	Soil	MVRVDPWDKAAECERAINIVADPERRVVLSRLRSVWLALGNKQGLFHRPGQFGALATIAQIHTELMSVCRHAMH
Ga0182035_113159732	3300016341	Soil	WGKAAECERAMAIVADPERRVILSKLRSVWVALGNKQSSLDAPEKALPVSTIAQIHTELISGCKNAMH
Ga0182034_103540092	3300016371	Soil	MMQVDPWGKAAECERAMAIVADPERRVILSKLRSVWVALGNKQSFLDASEGGVPLSTIVQIHTALISGCKNAMH
Ga0182037_101014601	3300016404	Soil	MVRVDPWDKAAECERAINIVADPERRVVLSRLRSVWLALGNKQGLFHRPGQFGALATIAHTPN
Ga0182039_118647012	3300016422	Soil	MVRVDPWDKAAECERAIKIVADPERRVVLSRLRSVWLALGNKQGLFHRPGQFGALATIAQIHTELMSVCRH
Ga0182038_111080531	3300016445	Soil	MVRVDPWDKAAECERAIEIVADPERRVVLSRLRSVWLALGNKQGLFHRPGQFGALATIAQIHTELMSVCRHAM
Ga0187780_106414682	3300017973	Tropical Peatland	MLQIDPWSKAAECESAIQVVADPERRIVLDRLRRLWLALCKEQSFFERPDRAGQLANIAQIHRELMAACRRAMH
Ga0187782_108180431	3300017975	Tropical Peatland	MLQVDPWGKAAECERAIAIVADPERRVVLSSLRSLWIALGNGQSRFQGAERTVHLSTIAQIHTELMSVCRNAMH
Ga0187772_108249712	3300018085	Tropical Peatland	MLQVDPWGKAAECERAIAIVADPERRVVLSSLRSLWIALGNGQSRFEGAERAAHLSTIAQIHTELMSVCRNAMH
Ga0179590_11990541	3300020140	Vadose Zone Soil	GGGAMVQVDPWCKAAECERAMEIVADPERRIVLSSLRSVWVALGNRQSLLEAPEQAGKVSTIAQIHTELMMVCKDAMH
Ga0210403_100764733	3300020580	Soil	MVQVDAWGKAAECERAMQIVADPERRIVLSSLRSVWVALGNKRSFLEAPDQAAQLSNIAQIHSELMSVCKNAMH
Ga0210403_106706841	3300020580	Soil	MAIALVDPWGKAAECERAIEVVADPERRVVLNSLRSLWIALGSEQSSFDGRELAGQLSTIAQIHTELMSVCRDAMH
Ga0210399_111037821	3300020581	Soil	MAQVDAWGKAAECERAMQIVADPERRIVLSSLRSVWVALGKKRSFLEAPEQAAQLSNIAQIHSELMSVCKNAMH
Ga0210400_102937802	3300021170	Soil	MVQVDPWGKVAECERAMEIVADPERRIVLSSLRSVWVALGNKRSFFEAPEQAGRLSTIAQIHTELMSVCKNAMH
Ga0210384_111030051	3300021432	Soil	MLQLDPWGKAAECERAIEIVADPERRIVLSSLRSVWITLGNNQSFLDAPERVGQLSNIVQIHTELISDYKSAMH
Ga0210402_102108323	3300021478	Soil	MSQIDPWSKAAECERAMEVIADPERRVVLSSLRSVWIALGNEQAFFAGSERASGLSTIAQIHTELMLVCRNAMH
Ga0210402_105724031	3300021478	Soil	TVEEGRAMPQVDPWGKAAECERAMRIVADPERRIVLSSLRSVWVALGNKRSSLAAPEQAGQLSTIAQIHTELMWVCKNAMH
Ga0126371_100173865	3300021560	Tropical Forest Soil	MLRLDPLGKAAECERAIEIVADPERRVVLSSLRSVWIALANKERFLRSSDPAGEVSTIAQIHAELMSVCRNAMH
Ga0126371_100333946	3300021560	Tropical Forest Soil	MVRVDPWDKAAECERAIAIVADPERRVVLSRLRGVWLALGNKQGLFHRPAQFGALATIAQIHTELMSVCRHAMH
Ga0126371_106645162	3300021560	Tropical Forest Soil	MLQVDPWSKAAECEHAIEIVADPERRVVLNSLRRVWIALGNKQASSEGPGQAGHLSNIAQIHTELMMACRHAMH
Ga0242656_10977942	3300022525	Soil	RGKAAECERAMQVVADPVRRVVLSSLRSVWVALGNKRSFLESPDQAGQLSNIAQIHSELMSACKDAMH
Ga0242664_10404981	3300022527	Soil	NVSGMIMSDNVCGNLVGAGTMLQLDPWGKAAECDRAIQIIADPERRVVLDSLRSVWIALGNKQSVFDAPERAGQLSTIAQIHTELMSACRMAMH
Ga0242664_10445441	3300022527	Soil	RHAMLQLQVDPWGKAAECERAIAAVADPERRVVLTSLRSLWIALGSERSSFDGFQRAGQLSTIAQIHSELMSACRNAMH
Ga0242657_10924622	3300022722	Soil	AECERAIEVVADPERRVVLNSLRSLWIALGSEQSSFDGRELAGQLSTIAQIHTELMSVCRDAMH
Ga0242654_101150131	3300022726	Soil	LVDPWGKAAECERAIEVVADPERRVVLNSLRSLWIALGSEQSSFDGRELAGQLSTIAQIHTELMSVCRDAMH
Ga0179589_102426603	3300024288	Vadose Zone Soil	MVQVDPWCKAAECERAMEIVADPERRIVLSSLRSVWVALGNRQSLLEAPEQAGKVSTIAQIHTELMMVCKDAMH
Ga0257150_10502102	3300026356	Soil	VHKDRSSLLGAGAMVQVDPWGKAAECERAMEIVADPERRIVLSSLRSVWVALGNKRSFLEAPQQAAQLSTIAQIHTELMSVCKNAMH
Ga0179587_109241532	3300026557	Vadose Zone Soil	MSLVDPWGKVAECERAIEVVADPERRVVLNSLRTLWIALGNERSYFDGLERADQLSTIAQIHIELMSVCRNAMH
Ga0209733_10391201	3300027591	Forest Soil	MVQVDPWGKAAECERAMEIVADPERRVVLSSLRSVWVALGNKRSFLEAPEQAGQLSTIAQIHTELLSVCKNAMH
Ga0209068_100449553	3300027894	Watersheds	MVQVDAWGKAAECERAMQIVADPERRIVLSSLRSVWVALGNNLSFLETHKQAAQLSNIAQIHTELMSVCKNAMH
Ga0209488_100235206	3300027903	Vadose Zone Soil	MLKVDPWGKAAECERAIEIVADPERRVVLNSLRSLWLALGNEQPFSDGLKRTGQLSTIAQIHVELMFVCRSAMH
Ga0209488_101787362	3300027903	Vadose Zone Soil	MLEVDPWGKAAECERAIEIVADPERRVVLNSLRSLWLALGSQPSFKELERAGRLSTIAQIHIELMSVCRSAMH
Ga0209069_106953461	3300027915	Watersheds	MLQLDPWGKAAECERAIEIVADPDRRIVLSSLRSVWITLGNNQSLLDEPERVGQLSNIAQIHTELISDCKSAMH
Ga0137415_102219351	3300028536	Vadose Zone Soil	MVWVDRWGKAAKCERAMEIVADPERRFVLSSLRSVWVALGNRQSFLGAPARAGQLSTIAQIHTDLKENRWRSLE
Ga0222749_100635421	3300029636	Soil	AECERAMEIVADPERRIVLSSLRSVWVALGNKRSFFEAPEQAGRLSTIAQIHTELMSVCKNAMH
Ga0222749_103061192	3300029636	Soil	AFQTCMLHNNRAVCLGVGAMVRVDPWGKAAECERAMAIVADPERRIVLSSLRSVWVALANKQSFLDGPEQAGQLSNIAQIHTELMSICKNAMH
Ga0138298_13685441	3300031015	Soil	TGWGAGAMSQIDPWGKAAECERAMEVIADPERRAVLGSLRSVWVALGNKQDFFDGPERGRLSTIAQIHAELMSVCRNAMH
Ga0318541_104775212	3300031545	Soil	MVRVDPWDKAAECERAIEIVADPERRVVLSSLRSVWLALGNKQALHYGPGQGGPVSAIAQIHTELMSVCRHAMH
Ga0318500_104830891	3300031724	Soil	MVRVDPWDKAAECERAIKIVADPERRVVLSRLRSVWLALGNKQCLFHRPGQFGALATIAQIHTELMSVCRHAMH
Ga0306918_105122813	3300031744	Soil	VRVDPWDKAAECERAIKIVADPERRVVLSRLRSVWLALGNKQGLFHRPGQFGALATIAQIHTELMSVCRHAMH
Ga0318547_107646821	3300031781	Soil	MLLVNPWDKAAECERAIKVVADPERRNVLDSLRSLWIALGNEQSLVGTVERASQLSTITQIHAELMSTYRNAMH
Ga0307478_110594191	3300031823	Hardwood Forest Soil	MRYLDPWQKAAECQRAIAVVADPERRDVLNSLRLLWIGLGNRWSLFDGVERAGQLSTIAQIHAELMCGCKNSMH
Ga0306925_105450072	3300031890	Soil	MVRVDPWDKAAECERAIKIVADPERRVVLSRLRSVWLALGNKQGLFHRPGQFGALATIAQIHTELMSVCRHAMH
Ga0306923_104213681	3300031910	Soil	MVRVDPWDKAAECERAIEIVADPERRVVLSSLRSVWLALGNKQALHYGPGQGGPVSAIAQIH
Ga0310916_110308862	3300031942	Soil	MMQVDPWGKAAECERAMAIVADPERRVILSKLRSVWVALGNKQSFLDASEGGVPLSTIVQIHTELISGCKNAMH
Ga0310916_114192912	3300031942	Soil	MLRVDPWVKAAECERAIGVVADPERRIVLSSLRTLWIALGNEQSLFEGAERAGRLSTIAQIHAELMWACRNAMH
Ga0318531_104476851	3300031981	Soil	MVRVDPWDKAAECERAINIVADPERRVVLSRLRSVWLALGNKQGLFHRPGQFGALATIAQIHTELMSVCR
Ga0318549_103178731	3300032041	Soil	MVRVDPWDKAAECERAIEIVADPERRVVLSSLRSVWLALGNKQALHYGPGQGDPVSAIAQIHTELMSVCRHAMH
Ga0306924_125100781	3300032076	Soil	MLQVDPWGKAAECEHAIEIVADPERRIVLNSLRSVWIALGNKKASSEGPGRAGHLSTIAQIHTELMTACRHAMH
Ga0306920_1006259114	3300032261	Soil	PSEQIMIDNERTYGEGAMVRVDPWDKAAECERAIEIVADPERRVVLSSLRSVWLALGNKQALHYGPGQGGPVSAIAQIHTELMSVCRHAMH
Ga0306920_1006260721	3300032261	Soil	MMHVDPWAKAAECERAMAIVADPERRVILSKLRSVWVALGNKQSSLDAPEKALPVSTIAQIHTELISGCKNAMH
Ga0306920_1040419092	3300032261	Soil	GTMSRADPWDKAAECERAIEVVADPERRVVLEKLRSLWIALGNEQSFVGAAERAGQLSTINQIHVELMSGRKNAMH
Ga0315742_132934001	3300032756	Forest Soil	AECERAMQIVADPERRIVLSSLRSVWVALGNKRSSLVAPEQAAQLSNIAQIHTELMSVCKNAMH
Ga0335069_115717891	3300032893	Soil	MSHLDANLDSFLDPFLDPWGKAAECARAIELVADPERRIVLDSLRSLWIALGNAQPLLEDAERNGQLLTISQIHSELISTCRDAMH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103838

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences