NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103898

Metagenome / Metatranscriptome Family F103898

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103898
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 67 residues
Representative Sequence FIANTNIKAQGETSSIANGALDEADRFDADTQITATLIAAGSTATTGQVTVTFTYVQANNLQDATAV
Number of Associated Samples 84
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 90.10 %
Associated GOLD sequencing projects 74
AlphaFold2 3D model prediction Yes
3D model pTM-score0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (72.277 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(20.792 % of family members)
Environment Ontology (ENVO) Unclassified
(83.168 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(67.327 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 10.53%    β-sheet: 0.00%    Coil/Unstructured: 89.47%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.22
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A72.28 %
All OrganismsrootAll Organisms27.72 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10254415Not Available533Open in IMG/M
3300001354|JGI20155J14468_10068095Not Available1391Open in IMG/M
3300001354|JGI20155J14468_10215604Not Available570Open in IMG/M
3300001450|JGI24006J15134_10090243All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1123Open in IMG/M
3300001460|JGI24003J15210_10092606Not Available884Open in IMG/M
3300001472|JGI24004J15324_10085988All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300001589|JGI24005J15628_10171589Not Available636Open in IMG/M
3300001853|JGI24524J20080_1025227Not Available591Open in IMG/M
3300001943|GOS2226_1012519All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1932Open in IMG/M
3300004448|Ga0065861_1071543All Organisms → cellular organisms → Bacteria817Open in IMG/M
3300004457|Ga0066224_1058119All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1524Open in IMG/M
3300005588|Ga0070728_10584594Not Available579Open in IMG/M
3300005609|Ga0070724_10376058Not Available627Open in IMG/M
3300006027|Ga0075462_10034519All Organisms → Viruses → environmental samples → uncultured Mediterranean phage1623Open in IMG/M
3300006027|Ga0075462_10185021Not Available629Open in IMG/M
3300006164|Ga0075441_10090945Not Available1176Open in IMG/M
3300006191|Ga0075447_10027126All Organisms → Viruses → Predicted Viral2224Open in IMG/M
3300006352|Ga0075448_10083169Not Available1010Open in IMG/M
3300006803|Ga0075467_10719096Not Available508Open in IMG/M
3300006810|Ga0070754_10351931Not Available652Open in IMG/M
3300006916|Ga0070750_10336058Not Available640Open in IMG/M
3300006919|Ga0070746_10070172Not Available1789Open in IMG/M
3300006947|Ga0075444_10064050All Organisms → cellular organisms → Bacteria1693Open in IMG/M
3300006947|Ga0075444_10151567Not Available971Open in IMG/M
3300007229|Ga0075468_10188323Not Available608Open in IMG/M
3300007276|Ga0070747_1077617All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED2281241Open in IMG/M
3300007540|Ga0099847_1211636All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228563Open in IMG/M
3300008012|Ga0075480_10507766Not Available580Open in IMG/M
3300008221|Ga0114916_1017226Not Available2559Open in IMG/M
3300009058|Ga0102854_1132642Not Available713Open in IMG/M
3300009428|Ga0114915_1164795All Organisms → cellular organisms → Bacteria → Proteobacteria623Open in IMG/M
3300009428|Ga0114915_1210368Not Available533Open in IMG/M
3300009428|Ga0114915_1210807Not Available532Open in IMG/M
3300009428|Ga0114915_1229620Not Available503Open in IMG/M
3300009433|Ga0115545_1032886Not Available2074Open in IMG/M
3300009435|Ga0115546_1110381Not Available993Open in IMG/M
3300009449|Ga0115558_1368773Not Available564Open in IMG/M
3300009507|Ga0115572_10172679All Organisms → cellular organisms → Bacteria → Proteobacteria1260Open in IMG/M
3300009508|Ga0115567_10233707Not Available1174Open in IMG/M
3300010392|Ga0118731_111700162Not Available502Open in IMG/M
3300010430|Ga0118733_103520753Not Available849Open in IMG/M
3300010430|Ga0118733_106754835Not Available598Open in IMG/M
3300010430|Ga0118733_109499843Not Available501Open in IMG/M
3300012524|Ga0129331_1022317Not Available581Open in IMG/M
3300017752|Ga0181400_1130686Not Available721Open in IMG/M
3300017757|Ga0181420_1056042Not Available1257Open in IMG/M
3300017769|Ga0187221_1064602Not Available1155Open in IMG/M
3300017781|Ga0181423_1114000Not Available1053Open in IMG/M
3300018610|Ga0188884_1008402Not Available688Open in IMG/M
3300018682|Ga0188851_1016400Not Available912Open in IMG/M
3300018682|Ga0188851_1018270All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium849Open in IMG/M
3300021389|Ga0213868_10710905Not Available511Open in IMG/M
3300022072|Ga0196889_1078786Not Available615Open in IMG/M
3300022149|Ga0196907_108945Not Available540Open in IMG/M
3300022169|Ga0196903_1006482Not Available1512Open in IMG/M
3300022187|Ga0196899_1165589Not Available605Open in IMG/M
(restricted) 3300022920|Ga0233426_10068572All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED2281636Open in IMG/M
3300025048|Ga0207905_1029050All Organisms → cellular organisms → Bacteria → Proteobacteria901Open in IMG/M
3300025071|Ga0207896_1054501Not Available649Open in IMG/M
3300025079|Ga0207890_1012453All Organisms → Viruses → Predicted Viral1760Open in IMG/M
3300025120|Ga0209535_1080692Not Available1236Open in IMG/M
3300025137|Ga0209336_10012580All Organisms → Viruses → Predicted Viral3273Open in IMG/M
3300025137|Ga0209336_10038631All Organisms → cellular organisms → Bacteria1552Open in IMG/M
3300025138|Ga0209634_1271828Not Available600Open in IMG/M
3300025266|Ga0208032_1008615All Organisms → cellular organisms → Bacteria3394Open in IMG/M
3300025653|Ga0208428_1141311All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium651Open in IMG/M
3300025674|Ga0208162_1084464Not Available975Open in IMG/M
3300025680|Ga0209306_1010711All Organisms → Viruses → Predicted Viral3512Open in IMG/M
3300025696|Ga0209532_1193410Not Available587Open in IMG/M
3300025751|Ga0208150_1250880Not Available534Open in IMG/M
3300025759|Ga0208899_1018513All Organisms → Viruses3555Open in IMG/M
3300025822|Ga0209714_1095953Not Available833Open in IMG/M
3300025876|Ga0209223_10293870Not Available740Open in IMG/M
3300027672|Ga0209383_1058353All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1414Open in IMG/M
3300027704|Ga0209816_1100121Not Available1132Open in IMG/M
(restricted) 3300027861|Ga0233415_10491287Not Available593Open in IMG/M
3300031141|Ga0308021_10136927Not Available968Open in IMG/M
3300031142|Ga0308022_1146981Not Available680Open in IMG/M
3300031142|Ga0308022_1158700Not Available648Open in IMG/M
3300031519|Ga0307488_10143150Not Available1684Open in IMG/M
3300031519|Ga0307488_10581640Not Available653Open in IMG/M
3300031539|Ga0307380_11301225Not Available555Open in IMG/M
3300031566|Ga0307378_11330966All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium558Open in IMG/M
3300031612|Ga0308009_10057800All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1491Open in IMG/M
3300031612|Ga0308009_10322610Not Available568Open in IMG/M
3300031628|Ga0308014_1036068Not Available1247Open in IMG/M
3300031644|Ga0308001_10067164All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1534Open in IMG/M
3300031647|Ga0308012_10216980Not Available753Open in IMG/M
3300031647|Ga0308012_10369798Not Available560Open in IMG/M
3300031659|Ga0307986_10005215Not Available8645Open in IMG/M
3300031683|Ga0308006_10195235Not Available629Open in IMG/M
3300031683|Ga0308006_10221716Not Available588Open in IMG/M
3300031688|Ga0308011_10157131Not Available689Open in IMG/M
3300031703|Ga0308002_1012161All Organisms → cellular organisms → Bacteria2171Open in IMG/M
3300031721|Ga0308013_10056519All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1603Open in IMG/M
3300031848|Ga0308000_10056112Not Available1411Open in IMG/M
3300031848|Ga0308000_10315668Not Available594Open in IMG/M
3300033742|Ga0314858_025227Not Available1338Open in IMG/M
3300033742|Ga0314858_082591Not Available807Open in IMG/M
3300034374|Ga0348335_021813Not Available3052Open in IMG/M
3300034375|Ga0348336_175318Not Available604Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous20.79%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine16.83%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine11.88%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine6.93%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine6.93%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean5.94%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment4.95%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine3.96%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.96%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake2.97%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.98%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine1.98%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.98%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine1.98%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil1.98%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine0.99%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.99%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.99%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.99%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300001354Pelagic Microbial community sample from North Sea - COGITO 998_met_05EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001472Marine viral communities from the Pacific Ocean - LP-32EnvironmentalOpen in IMG/M
3300001589Marine viral communities from the Pacific Ocean - LP-40EnvironmentalOpen in IMG/M
3300001853Marine viral communities from the Subarctic Pacific Ocean - LP-49EnvironmentalOpen in IMG/M
3300001943Marine microbial communities from Cape May, New Jersey, USA - GS010EnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300005588Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1EnvironmentalOpen in IMG/M
3300005609Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1EnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006191Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNAEnvironmentalOpen in IMG/M
3300006352Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNAEnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006947Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNAEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300008221Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66EnvironmentalOpen in IMG/M
3300009058Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02EnvironmentalOpen in IMG/M
3300009428Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009449Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300012524Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017769Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)EnvironmentalOpen in IMG/M
3300017781Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14EnvironmentalOpen in IMG/M
3300018610Metatranscriptome of marine microbial communities from Baltic Sea - LD35M_ls2EnvironmentalOpen in IMG/M
3300018682Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022149Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022169Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300022920 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MGEnvironmentalOpen in IMG/M
3300025048Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)EnvironmentalOpen in IMG/M
3300025071Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)EnvironmentalOpen in IMG/M
3300025079Marine viral communities from the Pacific Ocean - LP-48 (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025266Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025680Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)EnvironmentalOpen in IMG/M
3300025696Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)EnvironmentalOpen in IMG/M
3300025751Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025822Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)EnvironmentalOpen in IMG/M
3300025876Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)EnvironmentalOpen in IMG/M
3300027672Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027704Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300031141Marine microbial communities from water near the shore, Antarctic Ocean - #351EnvironmentalOpen in IMG/M
3300031142Marine microbial communities from water near the shore, Antarctic Ocean - #353EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031566Soil microbial communities from Risofladan, Vaasa, Finland - UN-1EnvironmentalOpen in IMG/M
3300031612Marine microbial communities from water near the shore, Antarctic Ocean - #127EnvironmentalOpen in IMG/M
3300031628Marine microbial communities from water near the shore, Antarctic Ocean - #229EnvironmentalOpen in IMG/M
3300031644Marine microbial communities from water near the shore, Antarctic Ocean - #5EnvironmentalOpen in IMG/M
3300031647Marine microbial communities from water near the shore, Antarctic Ocean - #179EnvironmentalOpen in IMG/M
3300031659Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82EnvironmentalOpen in IMG/M
3300031683Marine microbial communities from water near the shore, Antarctic Ocean - #69EnvironmentalOpen in IMG/M
3300031688Marine microbial communities from water near the shore, Antarctic Ocean - #177EnvironmentalOpen in IMG/M
3300031703Marine microbial communities from water near the shore, Antarctic Ocean - #34EnvironmentalOpen in IMG/M
3300031721Marine microbial communities from water near the shore, Antarctic Ocean - #181EnvironmentalOpen in IMG/M
3300031848Marine microbial communities from water near the shore, Antarctic Ocean - #3EnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1025441513300000116MarineGETSSIANGALDEADRFGSDTQITATLIAAGTTATTGQVSVTFTYVQANNLQDATAV*
JGI20155J14468_1006809533300001354Pelagic MarineIKAQGETSSIANGALDEADRFGSDTQITATLIAVGTTATVGQVTVTFTYVQANNLSDATAV*
JGI20155J14468_1021560423300001354Pelagic MarineIKAQGETSSIANGALDEADRFGSDTQITATLIAAGTTATVGQVTVTFTYVQANNLSDATAV*
JGI24006J15134_1009024353300001450MarineATVSVGKTGSTQYLIANTNVKALGETSSIANAALDEADRFDADTQIIATLISAGGAAATGQVTVTFTYLQANNLQDKAANT*
JGI24003J15210_1009260633300001460MarineDVKTLGETSALATGSLDSADRLGADTQVIATLIAAGNTATTGQVTVTFTYVQANNLQDATAI*
JGI24004J15324_1008598843300001472MarineYVKALGETSSIANGALDEADRFDSDTQITATLISAGGTATTGQITVTFTYMQANGLSDATAA*
JGI24005J15628_1017158923300001589MarineIGNTNVKALGETTALATGSLDEADRFGSDTQITATLIAAGSTATTGQVTVTFTYVQANNLQDVTAN*
JGI24524J20080_102522713300001853MarineAAYFIANTTVKTLGETSSIADAALDEADRFGSDTQITATLISAGSTASTGQVTVTFTYVQANNLRDAATA*
GOS2226_101251913300001943MarineSCIASDQGTTATVSVGKTGSAAFFIANTNIKAQGETSSIANGALDEADRFDADTQITATLIAAGSTATTGQVSVTFTYVQANNLQDATAV*
Ga0065861_107154313300004448MarineLIANTNVKALGETSSIANGALDEADRFDSDTQITATLISAGGTATTGQITVTFTYVQANGLSDAV*
Ga0066224_105811913300004457MarineETSSIANGALDESDRFGADTQIIATLISAGGAAATGQVTVTFTYVQANNLQDKAANT*
Ga0070728_1058459413300005588Marine SedimentGNTDVKTLGETSSIANGALDEADRFGSDTQITATLIAAGTTATTGQVSVTFTYVQANNLQDATAV*
Ga0070724_1037605833300005609Marine SedimentFIANTNIKAQGETSSIANGALDEADRFDADTQITATLIAAGSTATTGQVTVTFTYVQANNLQDATAV*
Ga0075462_1003451913300006027AqueousANTNIKAQGETSSIANGALDEADRFGSDTQITATLIAAGSTATVGQVSVTFTYVQANNLQDATAV*
Ga0075462_1018502133300006027AqueousANTNIKAQGETSSIANGALDEADRFGSDTQITATLIAAGTTATVGQVTVTFTYVQANNLSDATAV*
Ga0075441_1009094553300006164MarineNVKAVAETKTLAAGGLDTADRFSGDSQITATLISAGATATAGQITVTLTYVQDNNLQDATAV*
Ga0075447_1002712613300006191MarineETKTLAAASLDQADRISLDNQITATLISAGATATAGQITVTFTYVQGNNLQDATAV*
Ga0075448_1008316913300006352MarineETKTLAAGGLDTADRFSGDNQITATLISAGATATAGQITVTLTYLQANNLQDATAI*
Ga0075467_1071909613300006803AqueousTGSTQYLIANTNVKALGETSSIANAALDEADRFDADTQIIATLISAGGTATTGQVTVTFTYVQANRLQDKAANT*
Ga0070754_1035193113300006810AqueousTGSAAFFIANTNIKAQGETSSIANGALDEADRFDADTQITATLIAAGTTATVGQVSVTFTYVQANNLQDATAV*
Ga0070750_1033605813300006916AqueousTSSIANGALDEADRFDADTQITATLIAAGATATTGQVSVTFTYVQANNLSDATAV*
Ga0070746_1007017243300006919AqueousTNIKAQGETSSIANGALDEADRFGSDTQITATLIAAGSTATTGQVTVTFTYVQANNLQDAATA*
Ga0075444_1006405063300006947MarineAVAETKTLADASLDQADRFSGDSQITATLISAGATATAGQITVTLTYVQDNNLQDATAV*
Ga0075444_1015156733300006947MarineIANTNVKAIAETKTLANGSLDTADRFSGDSQITATLISAGAAATAGQITVTFTYLQGNNLQDADAI*
Ga0075468_1018832323300007229AqueousGSTQYLIANTNVKALGETSSIANAALDEADRFDADTQIIATLISAGGTATTGQVTVTFTYVQANRLQDKAANT*
Ga0070747_107761733300007276AqueousANTDVKTLGETSSIANAALDEADRVGSDVQVTATLIAVGTTATTGQVTVTFTYVQANNLQDAATA*
Ga0099847_121163613300007540AqueousYLIANTNVKALGETSSIADAALDEADRFGSDTQITATLISAGGTATTGQVTVTFTYVQANNLQDAATA*
Ga0075480_1050776613300008012AqueousSAAFFIANTNIKAQGETSSIANGALDEADRFGSDTQITATLIAAGTTATVGQVTVTFTYVQANNLSDATAV*
Ga0114916_101722683300008221Deep OceanQFLIANTNVKSAGETSALAAGGLDTADRFSGDSQITATLISAGATATNGQITVTFTYLQGNNLQDAAAN*
Ga0102854_113264213300009058EstuarineGKTGTAQYFIANTNVKALGETSSIADAALDEADRFSADTQITATLIAAGTTATTGQVSVTFTYVQANNLQDATAN*
Ga0114915_116479513300009428Deep OceanIANTNVKAAGETSALAAGGLDTADRFSLDSQITATLISAGAAATNGQITVTFTYVQNNNLQDATAI*
Ga0114915_121036823300009428Deep OceanGFFIGNTNVKALGETSTLATGSLDSADRLGADTQVIATLISAGGTATTGQVTVTFTYAQANNLSDATAI*
Ga0114915_121080723300009428Deep OceanFFIGNTNVKALGETSTLATGSLDSADRVGADTQVIATLISAGGTSTAGQVSITFTYLQANNLQDATAI*
Ga0114915_122962023300009428Deep OceanGFFIGNTNVKALGETSTLATGSLDSADRLGADTQVIATLISAGSTSTTGQVSITFTYLQANNLQDATAI*
Ga0115545_103288613300009433Pelagic MarineTSSIADAALDEADRFGSDTQITATLISAGGTATTGQVTVTFTYVQANNLSDATAV*
Ga0115546_111038133300009435Pelagic MarineFIANTNIKAQGETSSIANGALDEADRFGSDTQITATLIAAGTTATVGQVTVTFTYVQANNLSDATAV*
Ga0115558_136877313300009449Pelagic MarineAAFFIANTNIKAQGETSSIANGALDEADRFGSDTQITATLIAAGTTATVGQVTVTFTYVQANNLSDATAV*
Ga0115572_1017267913300009507Pelagic MarineTVSVGKTGSAQYLIANTSIKALGETSSIANGALDEADRFGSDTQITATLISAGATATTGQVTVTFTYVQANNLQDGLVIA*
Ga0115567_1023370713300009508Pelagic MarineLGETSSIADAALDEADRFGSDTQITATLISAGSTATTGQVTVTFTYVQANNLSDATAV*
Ga0118731_11170016223300010392MarineFFIANTNIKALGETSSIANGALDEADRFDADTQITATLIAAGSTATTGQVSVTFTYVQANNLQDATAV*
Ga0118733_10352075333300010430Marine SedimentVGKTGTAQYFIANTNIKAQGETSSIANGALDEADRFGSDTQITATLIAAGSTATVGQVSVTFTYVQANNLQDATAV*
Ga0118733_10675483523300010430Marine SedimentFIGNTDVKTLGETSSIANGALDEADRFDADTQITATLIAAGSTATTGQVSVTFTYVQANNLQDATAV*
Ga0118733_10949984323300010430Marine SedimentQYLIANTSVKALGETSSIANGALDEADRFDADTRIIATLISAGGAAATGQVTVTFTYVQGNNLQDKAANI*
Ga0129331_102231713300012524AqueousKALGETSSIANGALDEADRFDADTQITATLIAAGSTATTGQVTVTFTYVQANNLSDATAN
Ga0181400_113068613300017752SeawaterTGTAQYFIANTNVKALGETSSIADAALDEADRFSADTQITATLISAGGTATTGQVSVTFTYIQANNLQDAATA
Ga0181420_105604213300017757SeawaterVKALGETSSIADAALDEADRFSADTQITATLISAGGTATTGQVSVTFTYIQANNLQDAAT
Ga0187221_106460213300017769SeawaterTVSVGKTGTAQYFIANTNVKALGETSSIADAALDEADRFSADTQITATLISAGGTATTGQVSVTFTYIQANNLQDAATA
Ga0181423_111400033300017781SeawaterIANTNVKALGETSSIADAALDEADRFSADTQITATLISAGGTATTGQVSVTFTYIQANNLQDAATA
Ga0188884_100840213300018610Freshwater LakeEVTGILDAALDEADRFDADTQITATLIAVGTTATTGQVSVTFTYVQANNLSDATAV
Ga0188851_101640033300018682Freshwater LakeVGKTGTAQYFIANTNIKAQGETSSIADAALDEADRFGSDTQITATLIAVGTTATTGQVSVTFTYVQANNLSDATAV
Ga0188851_101827033300018682Freshwater LakeVGKTGTAQYFIANTNIKAQGETSSIADAALDEADRFGSDTQITATLIAVGTTATTGQVSVTFTYVQANNLQDATAV
Ga0213868_1071090523300021389SeawaterFIGNTDVKTLGETSSIANGALDEADRFDADTQITATLIAAGSTATTGQVSVTFTYVQANNLQDATAV
Ga0196889_107878613300022072AqueousQGETSSIANGALDEADRFDADTQITATLIAAGTTATVGQVSVTFTYVQANNLSDATAV
Ga0196907_10894513300022149AqueousANTNIKAQGETSSIANGALDEADRFDADTQITATLIAAGSTATTGQVSVTFTYVQANNLQDATAV
Ga0196903_100648213300022169AqueousKTGTAQYFIANTNIKAQGETSSIANGALDEADRFDADTQITATLIAAGSTATTGQVSVTFTYVQANNLQDATAV
Ga0196899_116558913300022187AqueousVSVGKTGSAAFFIANTNIKAQGETSSIANGALDEADRFGSDTQITATLIAAGTTATVGQVTVTFTYVQANNLSDATAV
(restricted) Ga0233426_1006857213300022920SeawaterGETSSIANGALDEADRFGSDTQITATLIAAGTTATTGQVTVTFTYVQANNLQDAATA
Ga0207905_102905013300025048MarineTLGETSALATGSLDSADRLGADTQVIATLIAAGTTATTGQVTVTFTYVQANNLQDAATA
Ga0207896_105450113300025071MarineYFIGNTDVKTLGETSSIANGALDEADRFGSDTQITATLIAAGNTATTGQVTVTFTYVQANNLQDAATA
Ga0207890_101245313300025079MarineNVKALGETSSIANGALDEADRFGSDTQITATLIAAGSTATTGQVTVTFTYVQANNLQDVTAN
Ga0209535_108069233300025120MarineTNVKALGEVSSIANGALDQSDRFDSDTQITATLIAAGTTATTGQVSITFTYVQANNLRDKAANI
Ga0209336_1001258083300025137MarineLGETSSIANGALDEADRFGSDTQITATLIAAGSTATTGQVTVTFTYVQANNLQDSATA
Ga0209336_1003863113300025137MarineNVKALGETSSIANGALDEADRFDSDTQITATLISAGGTATTGQITVTFTYMQANGLSDATAA
Ga0209634_127182813300025138MarineIGNTNVKALGETTTLATGSLDEADRFGADTQIIATLISAGSTATTGQVTVTFTYLQANNLQDATAV
Ga0208032_100861553300025266Deep OceanANTNIKAVGETKTLAAGSLDTADRFSADSQITATLISAGAAATAGQVTVTFTYVQDNFLQDATAV
Ga0208428_114131133300025653AqueousGSAAYFIGNTDVKTLGETSSIANGALDEADRFDADTQITATLIAAGTTATTGQVSVTFTYVQANNLSDATAV
Ga0208162_108446413300025674AqueousFFIANTNIKAQGETSSIANGALDEADRFDADTQITATLIAAGTTATVGQVSVTFTYVQANNLQDATAV
Ga0209306_101071113300025680Pelagic MarineAQYFIANTNIKAQGETSSIANGALDEADRFGSDTQITATLIAVGTTATVGQVTVTFTYVQANNLSDATAV
Ga0209532_119341013300025696Pelagic MarineVKTLGETSSIANGALDEADRFDADTQITATLIAAGTTATTGQVSVTFTYVQANNLSDATA
Ga0208150_125088023300025751AqueousRVAVVSNQGTTATVSVGKTGSAAFFIANTNIKALGETSSIANGALDEADRFDADTQITATLIAAGSTATTGQVSVTFTYVQANNLSDATAV
Ga0208899_101851363300025759AqueousTATVSVGKTGSAAFFIANTNIKAQGETSSIANGALDEADRFGSDTQITATLIAAGTTATVGQVTVTFTYVQANNLSDATAV
Ga0209714_109595333300025822Pelagic MarineQYFIANTNIKAQGETSSIANGALDEADRFGSDTQITATLIAAGTTATVGQVTVTFTYVQANNLSDATAV
Ga0209223_1029387013300025876Pelagic MarineKAQGETSSIANGALDEADRFGSDTQITATLIAVGTTATVGQVTVTFTYVQANNLSDATAV
Ga0209383_105835313300027672MarineIGKTTQFFIANTNVKAVAETKTLAAGGLDTADRFSGDNQITATLISAGATATAGQITVTLTYLQANNLQDATAI
Ga0209816_110012113300027704MarineTNVKAAGETKTLAAGSLDTADRFSADGQITATLISAGAAATAGQITVTFTYVQANNLQDKAANT
(restricted) Ga0233415_1049128723300027861SeawaterTVSVGKTGTAQYFIANTNIKAQGETSSIANAALDEADRFGSDTQITATLIAAGTTATVGQVSVTFTYVQANNLQDATAN
Ga0308021_1013692713300031141MarineAETKTLANGSLDTADRFSGDSQITATLISAGATATAGQITVTFTYVQNNNLQDETAI
Ga0308022_114698113300031142MarineVSVGVLSKTTQFLIANTNVKAAGETKTLAAGSLDTADRFSADGQITATLISAGAAATAGQITVTFTYVQANNLQDKAANT
Ga0308022_115870023300031142MarineKAVAETKTLAAGGLDTADRFSGDNQITATLISAGATATAGQITVTLTYLQANNLQDATAI
Ga0307488_1014315043300031519Sackhole BrineKTGAATYFIGNTDVKTLGETSSIANGALDEADRFGSDTQITATLIAAGTTATTGQVTVTFTYVQANNLQDAATA
Ga0307488_1058164013300031519Sackhole BrineKTGAATYFIGNTDVKTLGETSSIANGALDEADRFGSDTQITATLIAAGTAATTGQVTVTFTYVQANNLQDAATA
Ga0307380_1130122523300031539SoilFIANTNIKAQGETSSIADAALDEADRFGSDTQITATLIAVGTTATTGQVTVTFTYVQANNLQDATAN
Ga0307378_1133096623300031566SoilDVKTLGETSSIANGALDEADRFDADTQITATLIAVGTTATTGQVSVTFTYVQANNLSDATAV
Ga0308009_1005780053300031612MarineNVKAVAETKTLAAGGLDTADRFSGDNQITATLISAGATATAGQITVTLTYLQANNLQDATAI
Ga0308009_1032261013300031612MarineFLIANTNVKAIAETKTLANGSLDTADRFSGDSQITATLISAGATATAGQITVTFTYVQNNNLQDETAI
Ga0308014_103606813300031628MarineTQFFIANTNVKAVAETKTLAAGGLDTADRFSGDSQITATLISAGATATAGQITVTLTYVQDNNLQDATAV
Ga0308001_1006716453300031644MarineTTQFFIANTNVKAVGETKTLAAGGLDTADRFSGDNQITATLISAGATATAGQITVTLTYLQANNLQDATAI
Ga0308012_1021698023300031647MarineTVSVGVLSKTTQFLIANTNVKAAGETKTLAAGSLDTADRFSADSQITATLISAGAAATAGQITVTFTYLQANNLQDATAV
Ga0308012_1036979823300031647MarineATLSVGMVGKTTQFFIANTNVKTAAETKTLAAASLDQADRISLDNQITATLISAGATATAGQITVTLTYLQANNLQDATAI
Ga0307986_1000521513300031659MarineNVKAVAETKTLAAGGLDTADRFSGDSQITATLISAGATATAGQITVTLTYVQDNNLQDATAV
Ga0308006_1019523513300031683MarineLSKTTQFLIANTNVKAAGETKTLAAGSLDTADRFSADSQITATLISAGAAATAGQITVTFTYLQANNLQDATAV
Ga0308006_1022171623300031683MarineIGNTNIKALGETSTLATGSLDSADRVGADTQIIATLISAGGTATAGQVSVTFTYLQANNLQDATAI
Ga0308011_1015713133300031688MarineFIANTNVKAVAETKTLAAGGLDTADRFSGDSQITATLISAGATATAGQITVTLTYVQDNNLQDATAV
Ga0308002_101216113300031703MarineGKTTQFLITNTNVKAAGETSALAAGGLDTADRFSGDNQITATLISAGATATNGQITVTFTYLQGNNLQDAAAN
Ga0308013_1005651913300031721MarineLIANTNVKAVAETKTLAAGGLDTADRFSGDNQITATLISAGATATAGQITVTLTYLQANNLQDATAI
Ga0308000_1005611263300031848MarineIAETKTLANGSLDTADRFSGDSQITATLISAGATATAGQITVTFTYVQNNNLQDETAI
Ga0308000_1031566823300031848MarineKTTQFLIANTNVKAVAETKTLAAGGLDTADRFSGDNQITATLISAGATATAGQITVTLTYLQANNLQDATAI
Ga0314858_025227_1116_13373300033742Sea-Ice BrineAGTAQYLIANTNVKALGETSSIADAALDEADRFGSDTQITATLISAGGTATTGQVTVTFTYVQANNLQDAATA
Ga0314858_082591_1_2373300033742Sea-Ice BrineVSVGKTSSAAFFIGNTNVKALGETTALATGSLDEADRFGSDTQITATLIAAGSTATTGQVTVTFTYVQANNLQDATAN
Ga0348335_021813_2_1813300034374AqueousTLGETSSIANGALDEADRFDADTQITATLIAAGSTATTGQVSVTFTYVQANNLSDATAV
Ga0348336_175318_3_1793300034375AqueousQGETSSIANGALDEADRFGSDTQITATLIAAGTTATVGQVTVTFTYVQANNLSDATAV

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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