Metagenome Family F103934

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F103934
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	101 residues
Representative Sequence	DPNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVSSHNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGIVTGHERPISNVIHETFTIGG
Number of Associated Samples	72
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	94.06 %
% of genes from short scaffolds (< 2000 bps)	93.07 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (63.366 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (27.723 % of family members)
Environment Ontology (ENVO)	Unclassified (47.525 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.406 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 2.44% β-sheet: 26.02% Coil/Unstructured: 71.54%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00440	TetR_N	12.87
PF00196	GerE	3.96
PF03459	TOBE	1.98
PF13622	4HBT_3	1.98
PF13191	AAA_16	0.99
PF01642	MM_CoA_mutase	0.99
PF02627	CMD	0.99
PF12802	MarR_2	0.99
PF00583	Acetyltransf_1	0.99
PF00903	Glyoxalase	0.99
PF01243	Putative_PNPOx	0.99
PF06628	Catalase-rel	0.99
PF03640	Lipoprotein_15	0.99
PF03476	MOSC_N	0.99
PF00589	Phage_integrase	0.99
PF14312	FG-GAP_2	0.99
PF13463	HTH_27	0.99
PF13673	Acetyltransf_10	0.99
PF16859	TetR_C_11	0.99
PF13340	DUF4096	0.99
PF07885	Ion_trans_2	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.99
COG0753	Catalase	Inorganic ion transport and metabolism [P]	0.99
COG1884	Methylmalonyl-CoA mutase, N-terminal domain/subunit	Lipid transport and metabolism [I]	0.99
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.99
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	0.99
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.37 %
All Organisms	root	All Organisms	36.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.37 %
cellular organisms	root	All Organisms → cellular organisms	36.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.37 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.37 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	32.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.37 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	29.70 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.37 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	21.78 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.37 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1.98 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.98 %
Deinococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.37 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.98 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	1.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.98 %
Deinococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.37 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.98 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.37 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	1.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.98 %
Deinococcus apachensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus apachensis	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.37 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.98 %
Frankia sp. Iso899	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Iso899	0.99 %
Frankia sp. Ea1.12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Ea1.12	0.99 %
Deinococcus apachensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus apachensis	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_106436314	Not Available	662	Open in IMG/M
3300000956\|JGI10216J12902_102025692	Not Available	601	Open in IMG/M
3300004268\|Ga0066398_10000771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2611	Open in IMG/M
3300004633\|Ga0066395_10060151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Iso899	1714	Open in IMG/M
3300004633\|Ga0066395_10750256	Not Available	583	Open in IMG/M
3300004633\|Ga0066395_11039093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus apachensis	501	Open in IMG/M
3300005332\|Ga0066388_100453138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1924	Open in IMG/M
3300005332\|Ga0066388_100582762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1744	Open in IMG/M
3300005332\|Ga0066388_101169452	Not Available	1311	Open in IMG/M
3300005332\|Ga0066388_101753579	Not Available	1101	Open in IMG/M
3300005332\|Ga0066388_105266739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	656	Open in IMG/M
3300005332\|Ga0066388_105568816	Not Available	638	Open in IMG/M
3300005439\|Ga0070711_101384158	Not Available	612	Open in IMG/M
3300005538\|Ga0070731_10888516	Not Available	591	Open in IMG/M
3300005542\|Ga0070732_10814635	Not Available	569	Open in IMG/M
3300005549\|Ga0070704_100765662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	860	Open in IMG/M
3300005617\|Ga0068859_100335078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1607	Open in IMG/M
3300005713\|Ga0066905_100804783	Not Available	815	Open in IMG/M
3300005764\|Ga0066903_100027950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6277	Open in IMG/M
3300005764\|Ga0066903_100847995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1644	Open in IMG/M
3300005764\|Ga0066903_101334088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1343	Open in IMG/M
3300005764\|Ga0066903_101785481	Not Available	1174	Open in IMG/M
3300005764\|Ga0066903_103735883	Not Available	819	Open in IMG/M
3300005843\|Ga0068860_102658817	Not Available	519	Open in IMG/M
3300006028\|Ga0070717_10309785	Not Available	1405	Open in IMG/M
3300006028\|Ga0070717_10489691	Not Available	1111	Open in IMG/M
3300006163\|Ga0070715_10883792	Not Available	549	Open in IMG/M
3300006173\|Ga0070716_101564635	Not Available	540	Open in IMG/M
3300006176\|Ga0070765_102029565	Not Available	538	Open in IMG/M
3300006237\|Ga0097621_102339560	Not Available	511	Open in IMG/M
3300006804\|Ga0079221_10569458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	755	Open in IMG/M
3300006871\|Ga0075434_101090434	Not Available	812	Open in IMG/M
3300006903\|Ga0075426_10469572	Not Available	933	Open in IMG/M
3300009143\|Ga0099792_11217841	Not Available	511	Open in IMG/M
3300009545\|Ga0105237_11103187	Not Available	800	Open in IMG/M
3300009545\|Ga0105237_12696090	Not Available	508	Open in IMG/M
3300009792\|Ga0126374_10559690	Not Available	836	Open in IMG/M
3300009792\|Ga0126374_10913340	Not Available	681	Open in IMG/M
3300010043\|Ga0126380_10966133	Not Available	714	Open in IMG/M
3300010046\|Ga0126384_10232223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1480	Open in IMG/M
3300010046\|Ga0126384_11867659	Not Available	572	Open in IMG/M
3300010047\|Ga0126382_10023482	All Organisms → cellular organisms → Bacteria	3257	Open in IMG/M
3300010047\|Ga0126382_12386591	Not Available	513	Open in IMG/M
3300010048\|Ga0126373_10148910	Not Available	2222	Open in IMG/M
3300010048\|Ga0126373_10635426	Not Available	1122	Open in IMG/M
3300010048\|Ga0126373_10662073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1100	Open in IMG/M
3300010048\|Ga0126373_11167719	Not Available	836	Open in IMG/M
3300010358\|Ga0126370_12055455	Not Available	560	Open in IMG/M
3300010358\|Ga0126370_12412250	Not Available	522	Open in IMG/M
3300010360\|Ga0126372_11187196	Not Available	787	Open in IMG/M
3300010361\|Ga0126378_11086339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	901	Open in IMG/M
3300010362\|Ga0126377_12412430	Not Available	602	Open in IMG/M
3300010366\|Ga0126379_13075961	Not Available	558	Open in IMG/M
3300010376\|Ga0126381_100082342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4053	Open in IMG/M
3300010376\|Ga0126381_101982050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	839	Open in IMG/M
3300010376\|Ga0126381_102053701	Not Available	823	Open in IMG/M
3300010376\|Ga0126381_102940998	Not Available	678	Open in IMG/M
3300010376\|Ga0126381_103058052	Not Available	663	Open in IMG/M
3300010376\|Ga0126381_103075220	All Organisms → cellular organisms → Bacteria → Terrabacteria group	661	Open in IMG/M
3300010376\|Ga0126381_104403157	Not Available	545	Open in IMG/M
3300010398\|Ga0126383_11755295	Not Available	709	Open in IMG/M
3300010398\|Ga0126383_11981955	Not Available	670	Open in IMG/M
3300011270\|Ga0137391_10903038	Not Available	723	Open in IMG/M
3300012202\|Ga0137363_10224076	Not Available	1519	Open in IMG/M
3300012202\|Ga0137363_11427251	Not Available	582	Open in IMG/M
3300012203\|Ga0137399_11675707	Not Available	524	Open in IMG/M
3300012923\|Ga0137359_10315854	Not Available	1390	Open in IMG/M
3300012948\|Ga0126375_10752173	Not Available	766	Open in IMG/M
3300012971\|Ga0126369_10873803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	984	Open in IMG/M
3300014745\|Ga0157377_10104203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1695	Open in IMG/M
3300016270\|Ga0182036_10868225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	738	Open in IMG/M
3300016404\|Ga0182037_11866465	Not Available	538	Open in IMG/M
3300021088\|Ga0210404_10572886	Not Available	641	Open in IMG/M
3300021388\|Ga0213875_10294255	Not Available	768	Open in IMG/M
3300024347\|Ga0179591_1028433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3778	Open in IMG/M
3300025898\|Ga0207692_10104681	Not Available	1560	Open in IMG/M
3300025914\|Ga0207671_11158142	Not Available	606	Open in IMG/M
3300026035\|Ga0207703_11087655	Not Available	768	Open in IMG/M
3300026340\|Ga0257162_1032957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	640	Open in IMG/M
3300026377\|Ga0257171_1039698	Not Available	809	Open in IMG/M
3300026551\|Ga0209648_10709434	Not Available	549	Open in IMG/M
3300026557\|Ga0179587_10530929	All Organisms → cellular organisms → Bacteria → Terrabacteria group	773	Open in IMG/M
3300026557\|Ga0179587_10614267	Not Available	716	Open in IMG/M
3300027725\|Ga0209178_1146277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Ea1.12	814	Open in IMG/M
3300031747\|Ga0318502_10210225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1127	Open in IMG/M
3300031764\|Ga0318535_10373676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	637	Open in IMG/M
3300031769\|Ga0318526_10300756	Not Available	656	Open in IMG/M
3300031781\|Ga0318547_10467187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	778	Open in IMG/M
3300031793\|Ga0318548_10174430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1052	Open in IMG/M
3300031796\|Ga0318576_10486554	Not Available	582	Open in IMG/M
3300031797\|Ga0318550_10368703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	696	Open in IMG/M
3300031820\|Ga0307473_10516507	Not Available	809	Open in IMG/M
3300031845\|Ga0318511_10384318	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300031879\|Ga0306919_10632496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	825	Open in IMG/M
3300031896\|Ga0318551_10888506	Not Available	520	Open in IMG/M
3300031910\|Ga0306923_12065290	Not Available	576	Open in IMG/M
3300031912\|Ga0306921_10144184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2784	Open in IMG/M
3300031946\|Ga0310910_11169186	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300032025\|Ga0318507_10197049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	869	Open in IMG/M
3300032090\|Ga0318518_10465031	Not Available	648	Open in IMG/M
3300032094\|Ga0318540_10411715	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.11%
Host-Associated	Host-Associated	10.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.11%
Plants	Host-Associated → Plants	10.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.97%
Roots	Host-Associated → Plants → Roots	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.35%
Loam	Environmental → Terrestrial → Soil → Loam	23.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	27.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.97%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.99%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1064363141	3300000955	Soil	NAQGNSLLSAENGYVPFFNDVTAPTFGPGKIDPGAPGLVVTLSTTPAAAGGPQANLAGVFQLNAVNLRNGRIQTFNDWQVGVPGFFGSGVPTTLTAYVVQGTAPGVIPAGGLKPISNVLHETFTIGS*
JGI10216J12902_1020256921	3300000956	Soil	PGLVVTLSTTPAAAGGPRANLAGVFQLNTVTRHDGLRRIINDWEVGAPGFFGKNVRATLTAFLVQGTAPGVVTGREVPISNVVHETFTIAG*
Ga0066398_100007711	3300004268	Tropical Forest Soil	MPDPNAPGLVVTLSTTPRAAGGPNANLAGVFQLNSVSRHHGLTRVINDWEVGVPGFFGKNKQTTLTAYLVQGTAPGIVTGHEVPISNVIHETFTIGR*
Ga0066395_100601514	3300004633	Tropical Forest Soil	ERLPAGPQPPAGADLRTGYAGPDAPGLVVTMSTTPARAGGPNANLAGVFQLNTVERHDGLRRIVNEWEVGSPGFFGRNVHATLTAFLVSGRAPGMVTGHERPISNVVRETFTIGG*
Ga0066395_107502561	3300004633	Tropical Forest Soil	QLSAANGYRPGLNLPPAATFGPAMPDPDAPGLVVTLSTTPRAAGGPNANLAGVFQLNSVTRHQGMARVINDWEVGVPGFFGKNKQATLTAYLVKGTAPGIVTGHEQLISNVVHETFTIGR
Ga0066395_110390931	3300004633	Tropical Forest Soil	GYRPGLNLPPAKTFGPAMPDPNAPGLVVTLSTTPRAAGGPRANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNKQATLTAYLVSGTAPGIVTGHEKPISNVVHETFTIGR*
Ga0066388_1004531383	3300005332	Tropical Forest Soil	GPRANLAGVFQLNTVERHNGFRRVINDWEVGVPGFFGRNVRATLTAFLVSGTAPGRITGHEVPISNVVHETFTIGG*
Ga0066388_1005827624	3300005332	Tropical Forest Soil	SPAGRAVRRAAAGQYSTKPVKVSVLTPGAGDVAGAGGVFNIDLSLQAQNAAGNQALSPENGYIPFFNDVTAPTFGPGKIDPGAPGLVVTLSTTPAAAGGPQANLAGVFQLNAVNRHHGLIQTFNDWQVGVPGFFGSNVPSTLTAYAVQGTAPGVIPAGGLTPISNVVHETFTIGG*
Ga0066388_1011694521	3300005332	Tropical Forest Soil	AAGGPNANLAGVFQLNSVANHHGFTRVINDWEVGVPGFFGKNKQATLTAYLVSGTAPGIVTGHEKPISNVVHETFTIGR*
Ga0066388_1017535792	3300005332	Tropical Forest Soil	PDPDAPGLVVTLSTTPEAAGGPNANLAGVFQLNSVANHHAFTRVINDWKVGVPGFFGKNKQATLIAYLVSGTAPGIVAGRQKPISNVIHETFTIGR*
Ga0066388_1052667392	3300005332	Tropical Forest Soil	LVVTLSTTPQAAGGPNANLAGVFQLNATAKSRGLKQVFSDWEVGSPGFFGVNKQATLTAYVVNGTAPGIVTGNEQPISNVVRETFTIGG*
Ga0066388_1055688162	3300005332	Tropical Forest Soil	NGYIPFFNDVTAPTFGPGKIDPGAPGLVVTLSTTPAAAGGPQANLAGVFQLNAVNRHNGLIQTFNDWQVGVPGFFGSGVPTTLTAYVVEGTAPGVIPAGGLTAISNVVRETFTIGG*
Ga0070711_1013841581	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	APGLVVTLSTTPQAAGGPNANLAGVFQINSVSRHHGLIRVINDWEVGVPGFFGKNKPTTLTAYLVKGTAPGIVTGHEQPISNVVHETFRIGG*
Ga0070731_108885162	3300005538	Surface Soil	MPDPNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVASRNGLTRVITDWEVGVPGFFGTNTRVTLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG*
Ga0070732_108146351	3300005542	Surface Soil	PNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVASRNGLTRVITDWEVGVPGFFGTNTRVTLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG*
Ga0070704_1007656621	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VTLSTTPRAAGGPNANLAGVFQLNSVSSRNGLTRVITDWEVGVPGFFGKNKQATLTAFLVRGTAPGKVTGHERPISNVIHETFTIGG*
Ga0068859_1003350784	3300005617	Switchgrass Rhizosphere	TTPRAAGGPNANLAGVFQLNSVSSRNGLTRVITDWEVGVPGFFGKNKQATLTAFLVRGTAPGKVTGHERPISNVIHETFTIGG*
Ga0066905_1008047832	3300005713	Tropical Forest Soil	AAGGPNANLAGVFQLNSVSRHHGLTRVINDWEVGVPGFFGKNKQTTLTAYLVQGTAPGIVTGHEVPISNVIHETFTIGR*
Ga0066903_1000279508	3300005764	Tropical Forest Soil	VVTLSTTPRAAGGPNANLAGVFQLNSVTRHQGMARVINDWEVGVPGFFGKNKQATLTAYLVKGTAPGIVTGHEQLISNVVHETFTIGR*
Ga0066903_1008479953	3300005764	Tropical Forest Soil	MPDPNAPGLVVTLSTTPRAAGGPNANLAGVFQLNSVSRHQGLTRVINDWEVGVPGFFGKGKQATLTAYLVKGTAPGIVTGHQTPISNVIHESFTIGR*
Ga0066903_1013340883	3300005764	Tropical Forest Soil	RAAGGPNANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNVRATLTAFLVRGTAPGIVTGHERPISNVIHETFTIGG*
Ga0066903_1017854811	3300005764	Tropical Forest Soil	GYRPGLNLPPAATFGPGMPDPNAPGLVVTLSTTPRAAGGPNANLAGVFQLNSVSRHHGLTRVINDWEVGVPGFFGKNKQTTLTAYLVQGTAPGIVTGHEVPISNVIHETFTIGR*
Ga0066903_1037358831	3300005764	Tropical Forest Soil	SGPSLPDPNAPGLVVTLSSTPQAAGGSQANLAGTFQLNSVTRHAGMRRIVSDWEVSSPGFFGRDRTVRLTAYLVRGTAPRMVTGHEQPISNVVHESFTIGR*
Ga0068860_1026588171	3300005843	Switchgrass Rhizosphere	VTLSTTPQAAGGPNANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGMVTGHERPISNVIHETFTIGG*
Ga0070717_103097853	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	IAGTGGDFTVDLIAQALNARGNNQLSASHGYRPGLNLPPAKTFGPGMPDPNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVSSRNDLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGMVTGHERPISNVIHETFTIGG*
Ga0070717_104896911	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MPDPNAPGLVVTLSTTPRAAGGPHANLAGVFQLNSVSRHHGLTRVINDWEVGVPGFFGKNKQATVTAYIVNGTAPGIVTGGEKPISNVIHETFTIGR*
Ga0070715_108837921	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	LSTTPRAAGGANANLAGVFQLNSVSSRNGLTRVITDWEVGVPGFFGKNKQATLTAFLVRGTAPGKVTGHERPISNVIHETFTIGG*
Ga0070716_1015646351	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	GLNLPPAKTFGPGLPDPDAPGLVVTLSTTPQAAGGPNANLAGVFQINSVSRHHGLIRVINDWEVGVPGFFGKNKPTTLTAYLVKGTAPGIVTGHEQPISNVVHETFRIGG*
Ga0070765_1020295651	3300006176	Soil	TFGPGQPDPDAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGTNTRATLTAFLVSGTAPGMVTGHERPISNVIHETFTIGG*
Ga0097621_1023395602	3300006237	Miscanthus Rhizosphere	LNLPPAKTFGPGLPDPDAPGLVVTLSTTPRAAGGPNANLAGVFQLNSVSSRNGLTRVITDWEVGVPGFFGKNKQATLTAFLVRGTAPGKVTGHERPISNVIHETFTIGG*
Ga0079221_105694581	3300006804	Agricultural Soil	PAMPDPNAPGLVVTLSTTPQAAGGPNANLAGVFQINSVTRHHGLTRVINDWEVGVPGFFGKSKPTTLTAYLVKGTAPGIVTGHEQPISNVIHETFTIGR*
Ga0075434_1010904343	3300006871	Populus Rhizosphere	GDFIVDLIAQALNARGNNQLSASHGYRPGLNLPPAKTFGPGMPDPNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGMVTGHERPISNVIHETFTIGG*
Ga0075426_104695721	3300006903	Populus Rhizosphere	TLSTTPQAAGGPNANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGMVTGHERPISNVIHETFTIGG*
Ga0099792_112178411	3300009143	Vadose Zone Soil	LNLPPAKTFGPGMPDPDAPGLVVTLSTTPMGAGGPNANLAGVFQLNSVTSHRGLTEVLNTWEVGSPGFFGKNVHATLRAFIVKGTAPGMVTGHEKPISNVVQETFTIGG*
Ga0105237_111031872	3300009545	Corn Rhizosphere	VTLSTTPQAAGGPNANLAGVFQLNSVSSRNDLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGMVTGHERPISNVIHETFTIGG*
Ga0105237_126960901	3300009545	Corn Rhizosphere	TFGPGLPDPDAPGLVVTLSTTPRAAGGPNANLAGVFQLNSVSSRNGLTRVITDWEVGVPGFFGKNKQATLTAFLVRGTAPGKVTGHERPISNVIHETFTIGG*
Ga0126374_105596902	3300009792	Tropical Forest Soil	NARGNNQLSAANGYRPGLNLPPARTFGPRMPDPNAPGLVVTLSTTPRAAGGPNANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGTVTGHERPISNVIHETFTIGG*
Ga0126374_109133401	3300009792	Tropical Forest Soil	ANGYRPGLNLPPAATFGPKLPDPDAPGLVVTLSTTPQAAGGPHANLAGVFQLNSVTRHNGLTRVINDWEVGSPGFFGKNTPTTLTAYLVKGTAPGIVTGHEQRISNVVHETFTIGG*
Ga0126380_109661332	3300010043	Tropical Forest Soil	PGLNLPPAKTFGPGKPDPNAPGLVVTLSTTPRAAGGPNANLAGVFQLNSVSRHHGLTEIINDWEVGQPGFFGTNQRVTLTAFLVRGTAPGIVTGHERPISNVIHERFTIGG*
Ga0126384_102322233	3300010046	Tropical Forest Soil	QLSAANGYRPGLNLPPAATFGPAKPDPNAPGLVVTLSTTPQAAGGPRANLAGVFQLNSVSRHSGLIRVINDWEVGVPGFFGKGKPTTLTAYLVKGTAPGIVTGHEAPISNVIHETFTIGR
Ga0126384_118676591	3300010046	Tropical Forest Soil	KPDPNAPGLVVTLSTTPRAAGGPNANLAGVFQLNSVSRHHGLTRVINDWEVGRPGFFGTNQRVTLTAFLVRGTAPGIVTGHERPISNVIHERFTIGG*
Ga0126382_100234821	3300010047	Tropical Forest Soil	APGLVVTLSTTPQAAGGPNANLAGVFQLNSVSRHQGLTRVINDWEVGVPGFFGKGKQATLTAYLVQGTAPGMVTGHQTPISNVVHETFTIGR*
Ga0126382_123865911	3300010047	Tropical Forest Soil	PDPNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVSRHQGLIRVINDWEVGVPGFFGKNKPTTLTAYLVKGTAPGIVTGHETPISNVVHETFTIGG*
Ga0126373_101489103	3300010048	Tropical Forest Soil	VVTLSTTPQAAGGPNANLAGVFQLNSVANHHGFTRVINDWEVGVPGFFGTNKQATLTAYLVSGTAPGIVTGHEKPISNVVHETFTIGR*
Ga0126373_106354262	3300010048	Tropical Forest Soil	STTPQAAGGPNANLAGVFQLNSVARHQGFTRVINDWEVGVPGFFGKNKQATLIAYLVSGTAPGIVTGRQKPISNVIHETFTIGR*
Ga0126373_106620732	3300010048	Tropical Forest Soil	FGPAMPDPNAPGLVVTLSTTPRAAGGPRANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNVRATLTAFLVRGTAPGIVTGHERPISNVIHETFTIGG*
Ga0126373_111677191	3300010048	Tropical Forest Soil	NGYRPGLNLPPAKTFGPGMPDPNAPGLVVTLSTTPRAAGGPNANLAGVFQLNSVSRHHGLTRVINDWEVGVPGFFGTNKRATLTAFLVGGTAPGIVTGHERPISNVIHETFTIGG*
Ga0126370_120554551	3300010358	Tropical Forest Soil	RPGLNLPPAATFGPAMPDPNAPGLVVTLSTTPRAAGGPNANLAGVFQLNSVSSHNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGMVTGHERPISNVIHETFTIGG*
Ga0126370_124122501	3300010358	Tropical Forest Soil	LPPARTFGPGMPDPDAPGLVVTMSTTPARAGGPNANLAGVFQLNTVERHDGLRRIVNEWEVGSPGFFGRNVHATLTAFLVSGRAPGMVTGHERPISNVVRETFTIGG*
Ga0126372_111871961	3300010360	Tropical Forest Soil	PQAAGGPNANLAGVFQLNSVTSHQGLTRVITDWEVGVPGFFGKNKPTTLTAYLVKGTAPGIVTGHETPISNVIHETFTIGR*
Ga0126378_110863392	3300010361	Tropical Forest Soil	MPDPDVPGLVVTLSTTPQAAGGPNANLAGVFQLNATAKSRGLKQVFSDWEVGSPGFFGANKQTTLTAYVVRGTAPGIVTGNERPISNVITETFTIGG*
Ga0126377_124124301	3300010362	Tropical Forest Soil	LSTTPRAAGGPNANLAGVFQLNSVSRHHGLTEIINDWEVGQPGFFGTNQRVTLTAFPVRGTAPGIVTGHERPISNVIHETFTIGG*
Ga0126379_130759611	3300010366	Tropical Forest Soil	DPNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVSSHNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGIVTGHERPISNVIHETFTIGG*
Ga0126381_1000823421	3300010376	Tropical Forest Soil	PRAAGGPNANLAGVFQLNSVSRHHGLTRVINDWEVGVPGFFGKNKQTTLTAYLVQGTAPGIVTGHEVPISNVIHETFTIGR*
Ga0126381_1019820502	3300010376	Tropical Forest Soil	SASRGYRPGLNLPPATTFGPGKPDPNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVSSHNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGMVTGHERPISNVIHETFTIGG*
Ga0126381_1020537011	3300010376	Tropical Forest Soil	PRAAGGPNANLAGVFQLNSVSRHHGLTRVINDWEVGVPGFFGKNKQTTLTAYLVRGTAPGIVTGHEVPISNVIHETFTIGR*
Ga0126381_1029409982	3300010376	Tropical Forest Soil	VTLSTTPLAAGGPKTNLAGVFQLNSVSTHSGLTRVINDWESRRAGLLRQNKPTTLTAYLVKGTAPRTVMGHERPISNVVSETFTIGG*
Ga0126381_1030580522	3300010376	Tropical Forest Soil	PGLVVTLSTTPQAAGGPNANLAGVFQLNSVTSHNGFTRVINDWEVGVPGFFGKNKQATLTAYLVKGTAPGIVTGHEQLISNVVHETFTIGR*
Ga0126381_1030752201	3300010376	Tropical Forest Soil	PPAATFGPAMPDPNAPGLVVTLSTTPQAAGGPNANLAGVFQINSVTRHHGLTRVISDWEVGVPGFFGKNKPTTLTAYLVKGTAPGIVTGHERPISNVIHETFTIGR*
Ga0126381_1044031571	3300010376	Tropical Forest Soil	TLSTTPAAAGGPNANLAGVFQLNSVTQHHGLTRIINDWEVGVPGFFGKNKPTTLTAYLVKGTAPGIVTGHETPISNVIHETFTIGR*
Ga0126383_117552951	3300010398	Tropical Forest Soil	APGLVVTLSTTPRAAGGPNANLAGVFQLNSVSSRHGLTRVINDWEVGVPGFFGKNVRTTLTAFLVRGTAPGKVTGHERPISNVIHETFTIGG*
Ga0126383_119819551	3300010398	Tropical Forest Soil	NAPGLVVALSTTPRAAGGPNANLAGVFQLNSVSRHHGLTEIINDWEVGQPGFFGTNKRATLTAFLVSGTAPGIVTGRERPISNVVRETFTIGG*
Ga0137391_109030382	3300011270	Vadose Zone Soil	YRPGLNLPPAATFGPGLPDPNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVSRHHGLIRVINDWEVGVPGFFGKNEPTTLTAYLVRGTAPGIVTGHERPISNVVHETFTIGG*
Ga0137363_102240761	3300012202	Vadose Zone Soil	TPQAAGGPNANLAGVFQLNSVSGRNGLTRVINDWEVGVPGFFGTNTRATLTAFLVSGTAPGMVTGHERPISNVIHETFTIGG*
Ga0137363_114272511	3300012202	Vadose Zone Soil	AGAGGDFTVDLKALAQNATGNNELSASHGYRPGLNLPPAATFGPGLPDPNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVSRHHGLIRVINDWEVGVPGFFGKNKPTTLTAYLVRGTAPGIVTGHERPISNVVHETFTIGG*
Ga0137399_116757071	3300012203	Vadose Zone Soil	TTPQAAGGPNANLAGVFQLNATATSHGQKQVYTDWEVGSPGFFGVNTQATLTAYIVRGTAPGIVTGNEQQISNVVKETFTIGR*
Ga0137359_103158543	3300012923	Vadose Zone Soil	LSASNGYRPGLNLPPAATFGPGQPDPDAPGLVVTLSTTPRGAGGPNANLAGVFQLNSVSSHNGLTRVINDWEVGVPGFFGKNKQATLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG*
Ga0126375_107521731	3300012948	Tropical Forest Soil	STTPAAAGGPNANLTGVFQLNSVANHHGFTRVINDWEVGVPGFFGKNKQATLTAYLVSGTAPGIVTGHEKPISNVVHETFTIGR*
Ga0126369_108738031	3300012971	Tropical Forest Soil	VPGLVVTLSTTPQAAGGPNANLAGVFQLNSVTSHQGLTRVITDWEVGVPGFFGKNKPTTLTAYLVSGTAPGTVTGHEQPISNVIHETFTIGR*
Ga0157377_101042033	3300014745	Miscanthus Rhizosphere	APGLVVTLSTTPQAAGGPNANLAGVFQLNSVSSRNGLTRVITDWEVGVPGFFGKNKQATLTAFLVRGTAPGKVTGHERPISNVIHETFTIGG*
Ga0182036_108682252	3300016270	Soil	HHPQAAGGPNANLAGVFQLNSVSSHNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG
Ga0182037_118664651	3300016404	Soil	NGYRPGLNLPPAKTFGPGMPDPNAPGLVVTLSTTPRAAGGPRANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNVRATLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG
Ga0210404_105728862	3300021088	Soil	KTFGPGMPDPDAPGLVVTLSTTPMGAGGPNANLAGVFQLNSVTSHRGLTEILNTWEVGSPGFFGKNVHATLRAFIVKGTAPGMVTGHEKPISNVVQETFTIGG
Ga0213875_102942552	3300021388	Plant Roots	DPFAPGLVVTLSTTPQAVGGPRANLAGVFQLTDVARSHGLAQVFNDWEVGKAGAFGENTQTTLTAYLVQGTAPGIVTGSEKPISNVVRETFTIGG
Ga0179591_10284337	3300024347	Vadose Zone Soil	LPDPNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVSRHHGLTRVINDWEVGVPGFFGKGKPTTLTAYLVKGTAPGIVTGHQRPISNVIHETFTIGR
Ga0207692_101046811	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	APGLVVTLSTTPRAAGGPHANLAGVFQLNSVSRHHGLTRVINDWEVGVPGFFGKNKQATVTAYIVNGTAPGIVTGGEKPISNVIHETFTIGR
Ga0207671_111581421	3300025914	Corn Rhizosphere	GPGLPDPDAPGLVVTLSTTPRAAGGPNANLAGVFQLNSVSSRNGLTRVITDWEVGVPGFFGKNKQATLTAFLVRGTAPGKVTGHERPISNVIHETFTIGG
Ga0207703_110876551	3300026035	Switchgrass Rhizosphere	AGGPNANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGMVTGHERPISNVIHETFTIGG
Ga0257162_10329572	3300026340	Soil	VTLSTTPQAAGGPNANLAGVFQLNSVSRHHGLTRVINDWEVGSPGFFGTNTPTTLTAYLVKGTAPGIVTGHERPISNVIHETFTIGR
Ga0257171_10396981	3300026377	Soil	FGPGQPDPDAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVSSHNGLTRVINDWEVGVPGFFGTNTRATLTAFLVRGTAPGMVTGHERPISNVIHERFTIGG
Ga0209648_107094341	3300026551	Grasslands Soil	ASHGYRPGLNLPPAATFGPGKPDPDAPGLVVTLSTTPQGAGGPNANLAGVFQLNSVSSHNGLTRVINDWEVGVPGFFGKNKQATLTAFLVRGTAPGMVTGHERPISNVIHERFTIGG
Ga0179587_105309292	3300026557	Vadose Zone Soil	KAIAQNAHGNRELSPAHGYRPGLNLPPAKTFGPGMPDPDAPGLVVTLSTTPMGAGGPNANLAGVFQLNSVTSHRGLTEVLNTWEVGSPGFFGKNVHATLRAFIVKGTAPGMVTGHEKPISNVVQETFTIGG
Ga0179587_106142672	3300026557	Vadose Zone Soil	GLVVTLSTTPQAAGGPNANLAGVFQLNSVSRHHGLIRVINDWEVGVPGFFGKNKPTTLTAYLVRGTAPGIVTGHERPISNVVHETFTIGG
Ga0209178_11462771	3300027725	Agricultural Soil	YRPGLNLPPAATFGPAMPDPNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVTSHQGLTRVITDWEVGVPGFFGKNKPTTLTAYLVRGTAPGIVTGHEQPISNVIHERFTIGR
Ga0318502_102102252	3300031747	Soil	AQNARGNNLLSAANGYRPGLNLPPAKTFGPAMPDPNAPGLVVTLSTTPRAAGGPRANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNVRATLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG
Ga0318535_103736761	3300031764	Soil	STTPRAAGGPRANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNVRATLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG
Ga0318526_103007561	3300031769	Soil	LIARALNATGNRQLSASHGYRPGLNLPPATTFGPGKPDPNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVSSHNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGIVTGHERPISNVIHETFTIGG
Ga0318547_104671872	3300031781	Soil	STTPQAAGGPNANLAGVFQLNSVSSHNGLTRVINDWEVGVPGFFGKNVRATLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG
Ga0318548_101744301	3300031793	Soil	FGPAMPDPNAPGLVVTLSTTPRAAGGPRANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNVRATLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG
Ga0318576_104865541	3300031796	Soil	ATTFGPGKPDPNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVSSHNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGIVTGHERPISNVIHETFTIGG
Ga0318550_103687032	3300031797	Soil	MPDPNAPGLVVTLSTTPRAAGGPRANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNVRATLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG
Ga0307473_105165071	3300031820	Hardwood Forest Soil	PDPNAPGLVVTLSTTPRAAGGPNANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGMVTGHERPISNVIHETFTIGG
Ga0318511_103843181	3300031845	Soil	PAKTFGPGLPDPNAPGLVVTLSTTPRAAGGPRANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNVRATLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG
Ga0306919_106324962	3300031879	Soil	NARGNNLLSAANGYRPGLNLPPAKTFGPAMPDPNAPGLVVTLSTTPRAAGGPRANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNVRATLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG
Ga0318551_108885061	3300031896	Soil	AFGPAMPDPNVPGLVVTLSTTPQAAGGPKANLAGVFQLNSVTSHQGLTRVITDWEVGVPGFFGKNKPTTLTAYLVKGTAPGIVTGHEQPISNVIHETFTIGR
Ga0306923_120652901	3300031910	Soil	TLSTTPQAAGGPNANLAGVFQLNSVSSHNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGIVTGHERPISNVIHETFTIGG
Ga0306921_101441841	3300031912	Soil	LIAQAQNARGNNLLSAANGYRPGLNLPPAKTFGPAMPDPNAPGLVVTLSTTPRAAGGPRANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNVRATLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG
Ga0310910_111691862	3300031946	Soil	KTFGPAMPDPNAPGLVVTLSTTPRAAGGPRANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNVRATLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG
Ga0318507_101970492	3300032025	Soil	PRAAGGPRANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNVRATLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG
Ga0318518_104650311	3300032090	Soil	GKPDPNAPGLVVTLSTTPQAAGGPNANLAGVFQLNSVSSHNGLTRVINDWEVGVPGFFGKNKRATLTAFLVRGTAPGIVTGHERPISNVIHETFTIGG
Ga0318540_104117151	3300032094	Soil	SAANGYRPGLNLPPAKTFGPAMPDPNAPGLVVTLSTTPRAAGGPRANLAGVFQLNSVSSRNGLTRVINDWEVGVPGFFGKNVRATLTAFLVRGTAPGVVTGHERPISNVIHETFTIGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103934

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences