Metagenome / Metatranscriptome Family F104001

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F104001
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	90 residues
Representative Sequence	MKNILRNDEAPQDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKVARSEQWGRVIRFPR
Number of Associated Samples	87
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	59.41 %
% of genes near scaffold ends (potentially truncated)	46.53 %
% of genes from short scaffolds (< 2000 bps)	87.13 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (67.327 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (44.555 % of family members)
Environment Ontology (ENVO)	Unclassified (41.584 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.574 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.77% β-sheet: 18.60% Coil/Unstructured: 61.63%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF13193	AMP-binding_C	2.97
PF08327	AHSA1	1.98
PF13414	TPR_11	0.99
PF02586	SRAP	0.99
PF02796	HTH_7	0.99
PF03466	LysR_substrate	0.99
PF01255	Prenyltransf	0.99
PF09361	Phasin_2	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0020	Undecaprenyl pyrophosphate synthase	Lipid transport and metabolism [I]	0.99
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
All Organisms	root	All Organisms	32.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
cellular organisms	root	All Organisms → cellular organisms	32.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	32.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.75 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.87 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.97 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	1.98 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.99 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.97 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	1.98 %
Pusillimonas (ex Stolz et al. 2005)	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005)	0.99 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.87 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1.98 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.99 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.99 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.99 %
unclassified Pusillimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.87 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1.98 %
Pusillimonas sp. ANT_WB101	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. ANT_WB101	0.99 %
Mesorhizobium sp. AA23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. AA23	0.99 %
Bradyrhizobium sp. AS23.2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AS23.2	0.99 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_104057270	Not Available	632	Open in IMG/M
3300001661\|JGI12053J15887_10031401	All Organisms → cellular organisms → Bacteria → Proteobacteria	2984	Open in IMG/M
3300001661\|JGI12053J15887_10460462	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300005332\|Ga0066388_105838014	Not Available	622	Open in IMG/M
3300005764\|Ga0066903_100920627	Not Available	1585	Open in IMG/M
3300009137\|Ga0066709_103217690	Not Available	595	Open in IMG/M
3300010037\|Ga0126304_10964438	Not Available	581	Open in IMG/M
3300010038\|Ga0126315_10151014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1375	Open in IMG/M
3300010043\|Ga0126380_11144464	Not Available	667	Open in IMG/M
3300010047\|Ga0126382_10469410	Not Available	1003	Open in IMG/M
3300010398\|Ga0126383_12198248	Not Available	638	Open in IMG/M
3300012200\|Ga0137382_10324611	Not Available	1077	Open in IMG/M
3300012201\|Ga0137365_10859666	Not Available	662	Open in IMG/M
3300012204\|Ga0137374_10173893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1890	Open in IMG/M
3300012212\|Ga0150985_110464874	Not Available	1319	Open in IMG/M
3300012212\|Ga0150985_122878259	Not Available	734	Open in IMG/M
3300012354\|Ga0137366_11138090	Not Available	535	Open in IMG/M
3300012355\|Ga0137369_10437632	Not Available	935	Open in IMG/M
3300012356\|Ga0137371_11159821	Not Available	578	Open in IMG/M
3300012359\|Ga0137385_10792841	Not Available	787	Open in IMG/M
3300012360\|Ga0137375_10690074	Not Available	835	Open in IMG/M
3300012469\|Ga0150984_117168133	Not Available	2044	Open in IMG/M
3300012922\|Ga0137394_11119992	Not Available	651	Open in IMG/M
3300012929\|Ga0137404_10441672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1153	Open in IMG/M
3300016294\|Ga0182041_10746893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	871	Open in IMG/M
3300016319\|Ga0182033_10587039	Not Available	966	Open in IMG/M
3300017997\|Ga0184610_1002410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4246	Open in IMG/M
3300018000\|Ga0184604_10003898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2602	Open in IMG/M
3300018000\|Ga0184604_10226583	Not Available	650	Open in IMG/M
3300018027\|Ga0184605_10010436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3531	Open in IMG/M
3300018027\|Ga0184605_10055976	Not Available	1686	Open in IMG/M
3300018028\|Ga0184608_10025514	Not Available	2186	Open in IMG/M
3300018056\|Ga0184623_10235324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AS23.2	838	Open in IMG/M
3300018071\|Ga0184618_10110434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1089	Open in IMG/M
3300018429\|Ga0190272_11298851	Not Available	723	Open in IMG/M
3300018469\|Ga0190270_13263647	Not Available	514	Open in IMG/M
3300019254\|Ga0184641_1419742	Not Available	575	Open in IMG/M
3300019255\|Ga0184643_1145698	Not Available	664	Open in IMG/M
3300019279\|Ga0184642_1067829	Not Available	623	Open in IMG/M
3300020015\|Ga0193734_1071829	Not Available	607	Open in IMG/M
3300020018\|Ga0193721_1171195	Not Available	509	Open in IMG/M
3300021560\|Ga0126371_12257556	Not Available	657	Open in IMG/M
3300021951\|Ga0222624_1249391	Not Available	618	Open in IMG/M
3300026555\|Ga0179593_1224345	All Organisms → cellular organisms → Bacteria → Proteobacteria	2630	Open in IMG/M
3300027669\|Ga0208981_1038927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. ANT_WB101	1214	Open in IMG/M
3300028710\|Ga0307322_10002069	All Organisms → cellular organisms → Bacteria	4158	Open in IMG/M
3300028717\|Ga0307298_10110763	Not Available	784	Open in IMG/M
3300028721\|Ga0307315_10113560	Not Available	804	Open in IMG/M
3300028744\|Ga0307318_10027335	Not Available	1851	Open in IMG/M
3300028754\|Ga0307297_10221301	Not Available	667	Open in IMG/M
3300028768\|Ga0307280_10070885	Not Available	1121	Open in IMG/M
3300028771\|Ga0307320_10173961	Not Available	838	Open in IMG/M
3300028778\|Ga0307288_10113128	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300028778\|Ga0307288_10436427	Not Available	536	Open in IMG/M
3300028782\|Ga0307306_10001588	All Organisms → cellular organisms → Bacteria	4837	Open in IMG/M
3300028784\|Ga0307282_10466090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	613	Open in IMG/M
3300028784\|Ga0307282_10642811	Not Available	514	Open in IMG/M
3300028787\|Ga0307323_10148849	Not Available	845	Open in IMG/M
3300028791\|Ga0307290_10167467	Not Available	805	Open in IMG/M
3300028793\|Ga0307299_10096581	Not Available	1103	Open in IMG/M
3300028814\|Ga0307302_10164546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. AA23	1077	Open in IMG/M
3300028819\|Ga0307296_10010830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4787	Open in IMG/M
3300028824\|Ga0307310_10627821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300028828\|Ga0307312_10503759	Not Available	799	Open in IMG/M
3300028881\|Ga0307277_10317705	Not Available	692	Open in IMG/M
3300028885\|Ga0307304_10336133	Not Available	673	Open in IMG/M
3300030829\|Ga0308203_1003692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1479	Open in IMG/M
3300030829\|Ga0308203_1038566	Not Available	691	Open in IMG/M
3300030829\|Ga0308203_1087720	Not Available	519	Open in IMG/M
3300030830\|Ga0308205_1039218	Not Available	603	Open in IMG/M
3300030902\|Ga0308202_1010643	All Organisms → cellular organisms → Bacteria	1281	Open in IMG/M
3300030903\|Ga0308206_1084097	Not Available	690	Open in IMG/M
3300030990\|Ga0308178_1086595	Not Available	645	Open in IMG/M
3300030993\|Ga0308190_1130956	Not Available	579	Open in IMG/M
3300031058\|Ga0308189_10117950	Not Available	867	Open in IMG/M
3300031058\|Ga0308189_10535274	Not Available	509	Open in IMG/M
3300031058\|Ga0308189_10555688	Not Available	501	Open in IMG/M
3300031091\|Ga0308201_10358415	Not Available	537	Open in IMG/M
3300031091\|Ga0308201_10430775	Not Available	502	Open in IMG/M
3300031092\|Ga0308204_10026660	Not Available	1245	Open in IMG/M
3300031092\|Ga0308204_10183943	Not Available	642	Open in IMG/M
3300031092\|Ga0308204_10317172	Not Available	527	Open in IMG/M
3300031099\|Ga0308181_1082175	Not Available	669	Open in IMG/M
3300031123\|Ga0308195_1079783	Not Available	520	Open in IMG/M
3300031123\|Ga0308195_1088211	Not Available	504	Open in IMG/M
3300031152\|Ga0307501_10044928	Not Available	967	Open in IMG/M
3300031546\|Ga0318538_10106890	Not Available	1450	Open in IMG/M
3300031573\|Ga0310915_10433935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	933	Open in IMG/M
3300031744\|Ga0306918_10102543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2039	Open in IMG/M
3300031890\|Ga0306925_10280942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1792	Open in IMG/M
3300031910\|Ga0306923_11887177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	610	Open in IMG/M
3300031912\|Ga0306921_11522405	Not Available	730	Open in IMG/M
3300031942\|Ga0310916_10135815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2016	Open in IMG/M
3300031945\|Ga0310913_10231570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1295	Open in IMG/M
3300031947\|Ga0310909_10588098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	930	Open in IMG/M
3300032001\|Ga0306922_10847540	Not Available	953	Open in IMG/M
3300032035\|Ga0310911_10764138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300032051\|Ga0318532_10243614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300032076\|Ga0306924_10238158	Not Available	2090	Open in IMG/M
3300032261\|Ga0306920_102817763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	661	Open in IMG/M
3300033289\|Ga0310914_10695521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	912	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.03%
Host-Associated	Host-Associated	2.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.15%
Aquatic	Environmental → Aquatic	11.88%
Plants	Host-Associated → Plants	2.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.15%
Sediment	Environmental → Aquatic → Sediment	7.92%
Freshwater	Environmental → Aquatic → Freshwater	3.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.92%
Loam	Environmental → Terrestrial → Soil → Loam	4.95%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	61.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.95%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	44.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.97%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1040572701	3300000956	Soil	MKNILQNDEAPRDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKGGRLRTRIADAKVARSEKGGRVIRFPR*
JGI12053J15887_100314013	3300001661	Forest Soil	MPNTILPSDEPARDLALVEDEVIPGEWRVEYFDDDGDDYVTIFVGQEAEARARDYRDAIKEGRLGTRIADAKAAASQKASRVLRFPR*
JGI12053J15887_104604622	3300001661	Forest Soil	MPNTVLPSDESARDLALVEDEVIPGEWRVEYFDDDGDDYVAIFVGQEAESRARDYRDAIKERRLGTRIADARAAASQKTARVLRFPR*
Ga0066388_1058380142	3300005332	Tropical Forest Soil	RAVMKTTLRDNEPPRDLALIEDQYLSGEWVVEYFDDDGADYVAIFTGQEAEGRARDYRDAIKEGRLGTRIADAKVARSEQASRVVRFPR*
Ga0066903_1009206273	3300005764	Tropical Forest Soil	MKTTLRDNEPPRDLALIEDQYLSGEWVVEYFDDDGADYVAIFTGQEAEGRARDYRDAIKEGRLGTRIADAKVARSEQASRVVRFPR*
Ga0066709_1032176902	3300009137	Grasslands Soil	MSNASFRLAPSGLQASVMKNILQNDEAPRDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKGGRLRTRIVDAKVARSEQGGRVIRFPR*
Ga0126304_109644381	3300010037	Serpentine Soil	MPKTILPSDEPARDLMLIEDEVIRGEWRVEYFDDDGDDYVTIFVGQEAESRARDYRDAIKEGRLGTRIADA*
Ga0126315_101510141	3300010038	Serpentine Soil	MSIDLQGSRDVKVSKNQASVMKNILQNDEAPRDLALSEDREIPGEWLVEYFDDDGADYVTIFTGEEAEARARDYRDALKGGRLRTRIADAKVARSEQGGRVIRFPR*
Ga0126380_111444641	3300010043	Tropical Forest Soil	MEKRAVMKTTLRDNEPPRDLALIEDQYPSGEWVVEYFDDDGADYVAIFTGQEAEGRARDYRDAIKEGRLGTRIADAKVARSEQASRVVRFPR*
Ga0126382_104694102	3300010047	Tropical Forest Soil	MEQRAVMKTTLRDNEPPRDLALIEDQYLSGEWVVEYFDDDGADYVAIFTGQEAEGRARDYRDAIKEGRLGTRIADAKVARSEQASRVVRFPR*
Ga0126383_121982482	3300010398	Tropical Forest Soil	MEKRAVMKTTLRDNEPPRDLALIEDQYLSGEWVVEYFDDDGADYVAIFTGQEAEGRARDYRDAIKEGRLGTRIADAKVARSEQASRVVRFPR*
Ga0137382_103246111	3300012200	Vadose Zone Soil	MMKNILQNDEAPRDLALSEDREIPGEWLVEYFDDDGADYVTIFTGEEAEARARDYRDALKGGRLRTRIADAKVARSEQGGRVIRFPR*
Ga0137365_108596661	3300012201	Vadose Zone Soil	VKVSKNQASVMKNILQNDEAPRDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKVARSEQGGRVIRFPR*
Ga0137374_101738934	3300012204	Vadose Zone Soil	MSIDLQGSRDVKVSKNQASVMKNILQNDEAPRDLALSEDREIPGEWLVEYFDDDGADYVTIFTGEEAEARARDYRDALKGGRLQTRIADAKVARSEQGGRVI
Ga0150985_1104648741	3300012212	Avena Fatua Rhizosphere	MKNILQNDEAPQDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADARVARSEQGARVLRFHR*
Ga0150985_1228782592	3300012212	Avena Fatua Rhizosphere	GANVMKNILRNDEPPQDLALTEGQEISGEWLVEYSDDDGGDYLTIFEGEVAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVIRFPR*
Ga0137366_111380901	3300012354	Vadose Zone Soil	MKNMMKNILQNDEAPRDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKGGRLRTRIADAKVARSEQGGRVIRFPR*
Ga0137369_104376321	3300012355	Vadose Zone Soil	SKTTYIFVSSAWNLSHLMSIDLQGSRDVKVSKNQASVMKNILQNDEAPRDLALSEDREIPGEWLVEYFDDDGADYVTIFTGEEAEARARDYRDALKGGRLRTRIADAKVARSEQGGRVIRFPR*
Ga0137371_111598211	3300012356	Vadose Zone Soil	MKNILQNDEAPQDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKVARSEQGAAVRTGGRVIRFPR*
Ga0137385_107928412	3300012359	Vadose Zone Soil	MKNILQNDEAPQDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKVARSEQGGRVIRFPR*
Ga0137375_106900741	3300012360	Vadose Zone Soil	MSIDLQGSRDVKVSKNQASVMKNILQNDEAPRDLALSEDREIPGEWLVEYFDDDGADYVTIFTGEEAEARARDYRDALKGGRLQTRIADAKVARSEQGGRVIRFPR*
Ga0150984_1171681334	3300012469	Avena Fatua Rhizosphere	MKNILQNDEAPQDLALSEDREIPGEWLFEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADARVARSEQGARVLRFHR*
Ga0137394_111199922	3300012922	Vadose Zone Soil	MKNILRNDERPQHLALTEDLVIPGEWLVEYSDDDGADYLTSFAGQEAEARARDYRDALKEGRLGTRIVDAKVARSELGDKVIRFPR*
Ga0137404_104416721	3300012929	Vadose Zone Soil	MSIDLQGSHDVKLSKNQASVMKNILQNDEAPQDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKAARSEQGS
Ga0182041_107468933	3300016294	Soil	MKTTLRDNEPPRDLALIEDQYLSGEWVVEYFDDDGADYVAIFTGQEAEGRARDYRDAIKEGRLGTRIADAKVARSEQASRVIRFPR
Ga0182033_105870391	3300016319	Soil	MKTILRDNEPPRDLALIEDQYLSGEWVVEYFDDDGADYVAIFTGQEAEGRARDYRDAIKEGRLGTRIADAKVARSEQASRVVRFPR
Ga0184610_10024101	3300017997	Groundwater Sediment	MKNILRNDERPQHLALTEDLVIPGEWLVEYSDDDGADYLTSFAGQEAEARARDYRDALKEGRLGTRIVDAKVARSELGDKVIRFPR
Ga0184604_100038985	3300018000	Groundwater Sediment	MKNILRNDERPQHLALTEDLVIPGEWLVEYSDDDGADYLTSFAGQEAAARARDYRDALKEGRLGTRIVDAKVARSELGDKVIRFPR
Ga0184604_102265831	3300018000	Groundwater Sediment	MWNLSRLMSIDLHGSRNGEGVKNQASVMKNILRNDEAPQDLALAEDLVIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKVARSEQWGRVIRFPR
Ga0184605_100104367	3300018027	Groundwater Sediment	VMKKILRNDKPPQDLALTEDEEISGEWLVEYSDDDGGDYLTIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVIRFPR
Ga0184605_100559761	3300018027	Groundwater Sediment	MSIDLEGSRNVKLSKIQASLMKNILQNDEAPQDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADARVARSEQGARVLRFHR
Ga0184608_100255142	3300018028	Groundwater Sediment	MKNILRNDEAPQDLALAEDLVIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKVARSEQWGRVIRFPR
Ga0184623_102353242	3300018056	Groundwater Sediment	MKNILRNDERPQHLALTEDLVIPGEWLVEYSDDDGADYLTSFAGQEAEARARDYRDALKEGRLGTRIVDAKVARS
Ga0184618_101104342	3300018071	Groundwater Sediment	MKNILQNDEAPQDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADARVARSEQGARVLRFHR
Ga0190272_112988512	3300018429	Soil	MKNILRNDERPQHLALTEDLVIPGEWLVEYSDDDGADYLTSFAGQEAEARARDYRDALKEGRLGTRIADAKVARSEQWGRVIRFPR
Ga0190270_132636471	3300018469	Soil	MKNILRNDEAPQDLALAEDLVIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIVDAKVARSELG
Ga0184641_14197422	3300019254	Groundwater Sediment	REGVRNEVNAMKNILRNDERPQHLALTEDLVIPGEWLVEYSDDDGADYLTSFAGQEAEARARDYRDALKEGRLGTRIVDAKVARSELGDKVIRFPR
Ga0184643_11456982	3300019255	Groundwater Sediment	MKNILRNDERPQHLALTEDLVIPGEWLVEYSDDDGADYLTSFAGQEAEARARDYRDALKEGRLGTHIVDAKVARSELGDKVIRFPR
Ga0184642_10678291	3300019279	Groundwater Sediment	RNVKLSKIQASLMKNILQNDEAPQDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADARVARSEQGARVLRFHR
Ga0193734_10718292	3300020015	Soil	NEVNAMKNILRNDERPQHLALTEDLVIPGEWLVEYSDDDGADYLTSFAGQEAEARARDYRDALKEGRLGTRIVDAKVARSELGDKVIRFPR
Ga0193721_11711951	3300020018	Soil	MKNILRNDERPQHLALTEDLVIPGEWLVEYSDDDGADYLTSFAGQEAEARARDYRDALKEGRLGTRIVDAKVARSELGDK
Ga0126371_122575561	3300021560	Tropical Forest Soil	MKTTLRDNEPPRDLALIEDQYLSGEWVVEYFDDDGADYVAIFTGQEAEGRARDYRDAIKEGRLGTRIADAKVARSEQASRVVRFPR
Ga0222624_12493911	3300021951	Groundwater Sediment	CDGANVMKNILRNDEPPQDLALTEDQEISGEWLVEYSDDDGGDYLAIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVIRFPR
Ga0179593_12243454	3300026555	Vadose Zone Soil	VRHMMKNILQNDEAPRDLALSEDREIPGEWLVEYFDDDGADYVTIFTGEEAEARARDYRDALKGGRLRTRIADAKVARSEQGGRVIRFPR
Ga0208981_10389272	3300027669	Forest Soil	MPNTILPSDEPARDLALVEDEVIPGEWRVEYFDDDGDDYVTIFVGQEAEARARDYRDAIKEGRLGTRIADAKAAASQKASRVLRFPR
Ga0307322_100020695	3300028710	Soil	MKNILRNDEAPQDLALAEDLVIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKVARSEQWGR
Ga0307298_101107631	3300028717	Soil	MKNILRNDEPPQDLALTEDQEISGEWLVEYSDDDGGDYLAIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVIRFPR
Ga0307315_101135602	3300028721	Soil	MKNILRNDEAPQDLALAEDLVIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKVALSEQWGRVIRFPR
Ga0307318_100273351	3300028744	Soil	MKNILRNDEAPQDLALAEDLVIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADARVARSEQGARVLRFHR
Ga0307297_102213011	3300028754	Soil	VTKNILRNDKPPQDLALTEDEEISGEWLVEYSDDDGGDYLTIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVIRFPR
Ga0307280_100708851	3300028768	Soil	MKNILRNDEPPQDLALTEDQEISGEWLVEYSDDDGGDYLTIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQLGR
Ga0307320_101739612	3300028771	Soil	MPNTILPSDEPARDLAMVEDEVIPGDWRVEYFDDDGDDYVTIFVGQEAEARARDYRDAIKEGRLRTRIADARAAASQKTAQVLRFRR
Ga0307288_101131281	3300028778	Soil	PSDEPARDLAMVEDEVIPGEWRVEYFDDDGDDYVTIFVGQEAEARARDYRDAIKEGRLRTRIADARAAASQKTAQVLRFRR
Ga0307288_104364271	3300028778	Soil	REGLKNQASVMKNILRNDEAPQDLALAEDLVIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKVARSEQWGRVIRFPR
Ga0307306_100015884	3300028782	Soil	MKNILRNDEAPQDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKVARSEQWGRVIRFPR
Ga0307282_104660901	3300028784	Soil	DEPARDLAMVEDEVIPGEWRVEYFDDDGDDYVTIFVGQEAEARARDYRDAIKEGRLRTRIADARAAASQKTAQVLRFRR
Ga0307282_106428111	3300028784	Soil	VVKNILRNDEPPQDLALTEAQEISGEWLVEYSDDDGGDYLTIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVIRFPR
Ga0307323_101488492	3300028787	Soil	MPKTILPSDEPARDLAMVEDEVIPGEWRVEYFDDDGDDYVTIFVGQEAEARARDYRDAIKEGRLRTRIADARAAASQKTAQVLRFRR
Ga0307290_101674671	3300028791	Soil	MKNILRNDEPPQDLALTEDQEISGEWLVEYSDDDGGDYLAIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVI
Ga0307299_100965812	3300028793	Soil	EAPQDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADARVARSEQGARVLRFHR
Ga0307302_101645461	3300028814	Soil	MKNILRNDEPPQDLALTEDEEISGEWLVEYSDDDGGDYLTIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVIRFPR
Ga0307296_100108308	3300028819	Soil	MKNILRNDKPPQDLALTEDEEISGEWLVEYSDDDGGDYLTIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVIRFPR
Ga0307310_106278212	3300028824	Soil	MPNTILPSDEPARDLAMVEDEVIPGEWRVEYFDDDGDDYVTIFVGQEAEARARDYRDAIKEGRLRTRIADARAAASIRLLRDSTRKKRGHRR
Ga0307312_105037592	3300028828	Soil	IKLSKIQASLMKNILQNDEAPQDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADARVARSEQGARVLRFHR
Ga0307277_103177052	3300028881	Soil	MKNILQNDEAPRDLALFEDREIPGEWLVEFFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKVARSEQGGRVIRFPR
Ga0307304_103361331	3300028885	Soil	MKNILRNDEPPQDLALTEDQEISGEWLVEYSDDDGGDYLTIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVIRFPR
Ga0308203_10036921	3300030829	Soil	REGVKNQASVMKNILRNDEAPQDLALAEDLVIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKVARSEQWGRVIRFPR
Ga0308203_10385661	3300030829	Soil	ANVMKNILRNDEPPQDLALTEDQQISGEWLVEYSDDDGGDYLAIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVIRFPR
Ga0308203_10877202	3300030829	Soil	LGLTDQGSAMKNIPQNDESIPQFDEAPQDLALSEDEAIPGKWLVEYFDDDGGDYVTIFTGQEAEARARDYCDALKERRLRTPLRTPSWRGPHMGPR
Ga0308205_10392181	3300030830	Soil	EGVKNQASVMKNILRNDEAPQDLALAEDLVIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKVARSEQWGRVIRFPR
Ga0308202_10106431	3300030902	Soil	KNQASVMKNILRNDEAPQDLALAEDLVIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADAKVARSEQWGRVIRFPR
Ga0308206_10840971	3300030903	Soil	RQTVKDPGESLMKNILQNDEAPQDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADARVARSEQGARVLRFHR
Ga0308178_10865952	3300030990	Soil	NILRNDERPQHLALTEDLVIPGEWLVEYSDDDGADYLTSFAGQEAEARARDYRDALKEGRLGTRIVDAKVARSELGDKVIRFPR
Ga0308190_11309562	3300030993	Soil	SNVMKNILRNDEPPQDLALTEDQEISGEWLVEYSDDDGGDYLTIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVIRFPR
Ga0308189_101179501	3300031058	Soil	NVKLSKIQASLMKNILQNDEAPQDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADARVARSEQGARVLRFHR
Ga0308189_105352742	3300031058	Soil	DGANVMKNILRNDEPPQDLALTEDQEISGEWLVEYSDDDGGDYLTIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVIRFPR
Ga0308189_105556881	3300031058	Soil	TDQGSAMKNIPQNDESIPQFDEAPQDLALSEDEAIPGEWLVEYFDDDGGDYVTIFTGQEAEARARDYCDALKERRLRTRIADAKLARSAHGATVIKFPR
Ga0308201_103584151	3300031091	Soil	MPKTILPSDEPARDLTLVEDEVIPGEWRVEYFDEEGDDYLTIFVGQQAELRARDYRDAIKEGRLETRIADAKAAFSQKGARVLRFPR
Ga0308201_104307752	3300031091	Soil	CEGANVMKNILRNDEPPQDLALTEGQEISGEWLVEYSDDDGGDYLTIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVVRFPR
Ga0308204_100266603	3300031092	Soil	FYPLKLSKIQASLMKNILQNDEAPQDLALSEDREIPGEWLVEYFDDDGADYVTIFTGQEAEARARDYRDALKEGRLGTRIADARVARSEQGARVLRFHR
Ga0308204_101839432	3300031092	Soil	SNVMKNILRNDEPPQDLALTEDQEISGEWLVEYSDDDGGDYLTIFEGEEAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVIRLPR
Ga0308204_103171721	3300031092	Soil	MPKTILPSDEPARDLTLVEDEESPASGALSISMRKATITSRFVGQQAELRARDYRDAIKEGRLETRIADAKAAFSQKGARVLRFPR
Ga0308181_10821752	3300031099	Soil	EGVRNEVNAMKNILRNDERPQHLALTEDLVIPGEWLVEYSDDDGADYLTSFAGQEAEARARDYRDALKEGRLGTRIVDAKVARSELGDKVIRFPR
Ga0308195_10797832	3300031123	Soil	EGVRNEVNAMKNILRNDERPQHLALTEDLVIPGEWLVEYSDDDGADYLTSFAGQEAEARARDYRDALKEGRLGTRIVDAKVARSELGDKVISFPR
Ga0308195_10882112	3300031123	Soil	GANVMKNILRNDEPPQDLALTEGQEISGEWLVEYSDDDGGDYLTIFEGEVAEARARDYRDALKDGRLGTRIADAKVGRSEQRGRVIRFPR
Ga0307501_100449281	3300031152	Soil	MKNILRNDEPPQDLALTEGQEISGEWLVEYSDDDGGDYLTIFEGEVAEARARDYRDALKEGRLGTRIADAKVGRSEQRGRVIRFPR
Ga0318538_101068903	3300031546	Soil	LRDNEPPRDLALIEDHCLPGEWIVEYFDDDGADYVATFTGEEAEARARDYRDAIKEGRLGTRIADAKIARSEQASRVIRFPR
Ga0310915_104339352	3300031573	Soil	MKTILRDNEPPRDLALIEDHCLPGEWIVEYFDDDGADYVATFTGEEAEARARDYRDAIKEGRLGTRIADAKIARSEQASRVIRFPR
Ga0306918_101025431	3300031744	Soil	ALINLGGGYWKKRGLMKRILRDNEPPRDLALIEDHCLPGEWIVEYFDDDGADYVATFTGEEAEARARDYRDAIKEGRLGTRIADAKIARSEQASRVIRFPR
Ga0306925_102809422	3300031890	Soil	MEQRAVMKTTLRDNEPPRDLALIEDQYLSGEWVVEYFDDDGADYVAIFTGQEAEGRARDYRDAIKEGRLGTRIADAKVARSEQASRVVRFPR
Ga0306923_118871771	3300031910	Soil	SGSCAWHCRNRRCCAALINLGGGYWKKRGLMKTILRDNEPPRDLALIEDHCLPGEWIVEYFDDDGADYVATFTGEEAEARARDYRDAIKEGRLGTRIADAKIARSEQASRVIRFPR
Ga0306921_115224051	3300031912	Soil	RDLALIEDQYLSGEWVVEYFDDDGADYVAIFTGQEAEGRARDYRDAIKEGRLGTRIADAKVARSEQASRVVRFPR
Ga0310916_101358152	3300031942	Soil	MEQRAVMKTTLRDNEPPRDLALIEDHCLPGERIVEYFDDDGADYVATFTGEEAEARARDYRDAIKEGRLGTRIADAKIARSEQASRVIRFPR
Ga0310913_102315702	3300031945	Soil	MEQRAVMKTTLRDNEPPRDLALIEDHCLPGEWIVEYFDDDGADYVATFTGEEAEARARDYRDAIKEGRLGTRIADAKIARSEQASRVIRFPR
Ga0310909_105880982	3300031947	Soil	MKRILRDNEPPRDLALIEDHCLPGEWIVEYFDDDGADYVATFTGEEAEARARDYRDAIKEGRLGTRIADAKIARSEQASRVIRFPR
Ga0306922_108475401	3300032001	Soil	MEQRAVMKTTLRDNEPPRDLALIEDQYLSGEWVVEYFDDDGADYVAIFTGQEAEGRARDYRDAIKEGRLGTRIADAKVARSEQASRVVR
Ga0310911_107641381	3300032035	Soil	CAALINLGGGYWKKRGLMKRILRDNEPPRDLALIEDHCLPGERIVEYFDDDGADYVATFTGEEAEARARDYRDAIKEGRLGTRIADAKIARSEQASRVIRFPR
Ga0318532_102436143	3300032051	Soil	KRILRDNEPPRDLALIEDHCLPGEWIVEYFDDDGADYVATFTGEEAEARARDYRDAIKEGRLGTRIADAKIARSEQASRVIRFPR
Ga0306924_102381581	3300032076	Soil	MEHRAVMKTTLRDNEPPRDLALIEDQYLSGEWVVEYFDDDGADYVAIFTGQEAEGRARDYRDAIKEGRLGTRIADAKVARSEQASRVVRFPR
Ga0306920_1028177631	3300032261	Soil	RGVTTVPCCSGSCAWHCRNRRCCAALINLGGGYWKKRGLMKRILRDNEPPRDLALIEDHCLPGEWIVEYFDDDGADYVATFTGEEAEARARDYRDAIKEGRLGTRIADAKIARSEQASRVIRFPR
Ga0310914_106955212	3300033289	Soil	MKTILRDNEPPRDLALIEDHCLPGERIVEYFDDDGADYVATFTGEEAEARARDYRDAIKEGRLGTRIADAKIARSEQASRVIRFPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F104001

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences