NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F104154

Metagenome Family F104154

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104154
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 47 residues
Representative Sequence MQSNQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYANDDDWNEDYRYEY
Number of Associated Samples 2
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 2
AlphaFold2 3D model prediction Yes
3D model pTM-score0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (98.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Roots → Unclassified → Unclassified → Root
(99.000 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(100.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 5.19%    β-sheet: 0.00%    Coil/Unstructured: 94.81%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF03732Retrotrans_gag 6.00
PF00665rve 4.00
PF00967Barwin 1.00
PF03469XH 1.00
PF00004AAA 1.00
PF00385Chromo 1.00
PF13960DUF4218 1.00
PF00078RVT_1 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 4.00
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 4.00
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 4.00
COG4584TransposaseMobilome: prophages, transposons [X] 4.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A98.00 %
All OrganismsrootAll Organisms2.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300014486|Ga0182004_10005062All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor10708Open in IMG/M
3300014486|Ga0182004_10018431All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae5330Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
RootHost-Associated → Plants → Roots → Unclassified → Unclassified → Root99.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300014486Endophyte microbial communities from Sorghum bicolor roots, Mead, Nebraska, USA - 072115-40_1 MetaGHost-AssociatedOpen in IMG/M
3300015265Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaGHost-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0182004_10000730223300014486RootPHEPLVILVEYDMCSLLQFPNTSGYDNEDDWNEDYRYEY*
Ga0182004_1000246273300014486RootMQLNQFQLFEPYESLVILFEYNMCSLLQFSHTLGYANDDDWNEDYRYEY*
Ga0182004_10002554113300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLHFPNTPGYDNDDAWNEDYRYEY*
Ga0182004_1000506213300014486RootMLSNRCQLFEPHEPLVILIEYDMCSLLQFPNTLGYAKDDDWIEDYCYEY*
Ga0182004_1000929113300014486RootHEPLVILVEYDMCSLLQFPNTSGYDNEDDWNEDYRYEY*
Ga0182004_1000955723300014486RootMQSNQCQLFEPHEPLVIFVEYEMCSLLQSPNTPGYASVDVWNEDYRYEY*
Ga0182004_10009996103300014486RootSNQCQLFEPYEPLVILVEYDMCSLLQFPNTSGYDNEDDWNENYRYEY*
Ga0182004_1001071413300014486RootPHEPLVILVEYDMCSLLQFPNTPGYDNDDAWNEDYRYEY*
Ga0182004_1001442173300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFPNTLGYANDDDWYEDYRYEY*
Ga0182004_1001492233300014486RootMEQR*IMWLQSQLFEPHEPLVILVEYDMCSLLQFSNTPGYANDDDWNEDYRYEY*
Ga0182004_1001492843300014486RootMQSNQCQLIEPHEPLVILVEYDM*SLLQFPNTSGYSNEDDWNKDYRYEY*
Ga0182004_1001516373300014486RootMQSNLCQLFEPHEPLVILVEYDMCSLLQFSNTPGYANDDDWNEDYRYEY*
Ga0182004_1001525583300014486RootMQSNQYQLFEPHEPLVILVEYDMCSLLQFPNTPGYANDDDWNEHYRYEY*
Ga0182004_1001530613300014486RootMQLNQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1001666913300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFPNTLGYAYDDDWNEDYRYES*
Ga0182004_10017223113300014486RootMQSTQCQLFEPHEPLVILVEYDMCSLLQFPNTSGYDNEDVWNEDYRYEY*
Ga0182004_1001778913300014486RootCQLFEPHEPLVILVEYDMCSLLQFPNTPGYDNDDAWNEDYRYEY*
Ga0182004_1001828543300014486RootMQSNQCQLIEPHEPLVILVEYDMCSLLLFDNTLGYSDEDDWNEDYRYEY*
Ga0182004_1001843143300014486RootMQSNQCQFIEPREPLVILVEYDLCSPSLFHNTSGYVNEDDWNENYRYEY*
Ga0182004_1001949173300014486RootMLYAYKSFLQSNKCQLFEPHEPLVILVEYDMCSLLQFPKTSGYVNEDDWNENYRYEY*
Ga0182004_1002028573300014486RootMQSNQCQLFEPHEPLVILVEYNMCSLLQFPNTSGYDNEDDWNEDYRYEY*
Ga0182004_1002045223300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFSNTPGYASDDVWNGVYRYEY*
Ga0182004_1002152723300014486RootMRLNQCQLFEPHEPLAILVEYDMCSLLQFFNTPGYANDDDWNEDYRYEY*
Ga0182004_1002162643300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYAMDDDWIEDYRYEY*
Ga0182004_1002189553300014486RootMQSNQCQLIEPHEPLVILVEYDMCSLLLFHNTLVYSNEDDWNEDYRYEY*
Ga0182004_1002340933300014486RootMQSNQCQLFEPHEPLIILVEYDMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1002446713300014486RootMQSYQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYANDDDWNED
Ga0182004_1002560433300014486RootMQSNQCKLFEPHEPLVIHVEYDMCSLLQFPNTPGYAYDDDWNEDYRYEY*
Ga0182004_1002677213300014486RootFEPHKSLVILVEYDMCSLLQFPNTPGYANDDDSNEDYRYEY*
Ga0182004_1002907313300014486RootPHEPLVILVEYDMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1002909443300014486RootMQSNQCQLFELHEPLVILVEYDMCSLLQFPNTPGYASDDDWNEDYRYEY*
Ga0182004_1002916513300014486RootMKSNLQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYDNDVAWNEDYRYEY*
Ga0182004_1003046013300014486RootMQSNHCQLIEPHEPLVILVEYDMCSLLLFHNTSGYVNEGDWNEDYRYEY*
Ga0182004_1003062663300014486RootMQLNQCQLFEPHEHLVILVEYDMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1003247213300014486RootMQSNLCQLFEPHEPLVILVEYDMCSLLQFPNTPGYANDDDLNEDYRYEY*
Ga0182004_1003263313300014486RootMQSNQCQLIQPHEPHVILVEYDMCSLLQFPNTPGYANDDGWNEDYRYEY*
Ga0182004_1003285623300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLMQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1003553023300014486RootMQLNQCQLFEPHEHLVILVEYDMYSLLQILKTQGYANEDDWNEDY*
Ga0182004_1003558023300014486RootMQSNQCQLNEPHEPLVILVEYDMCSLLLFHNTSGYVNEDDWNEDYRYEY*
Ga0182004_1003613533300014486RootMQRNQCQLIKPHELLVILVEYNMCSLLLFHNTSGYSNEDDWNEDYRYEY*
Ga0182004_1003623673300014486RootMQLNQCQLFEPHEPLVILVEYDMCSLLQFPNTRGYDNDDDWNEDYCYEY*
Ga0182004_1004076013300014486RootMQSNQCQLFEPHEPLVILVEYDMCSPLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1004132653300014486RootMQSNQCQLFEPREPLFILVEYNMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1004161933300014486RootMESNQCQLFEPHEPLVILVEYDMCLLLQFPNTPGYVNDDAWNEDYPYEY*
Ga0182004_1004162533300014486RootMQSNQCQLFEPHEPLVILIEYDMCSLLQFPNTLGYDNDDACNEDYRYEY*
Ga0182004_1004254313300014486RootMQSNQCQLIEPHEPLVILVEYDMYSLLHFPNTRGYANYDGWNEDYRYEY*
Ga0182004_1004564123300014486RootMQSNQCQLFEPHEPLVILVDYDMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1004926323300014486RootMQLNQCQLIESQELLIILIVYDMCSLLLFHNTSGYVNEDDWNWNENYRYEY*
Ga0182004_1005041823300014486RootMQSNQCQLFEPYEHLVILVEYDMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1005237013300014486RootSNQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYANDDDWNDNYRYEY*
Ga0182004_1005627313300014486RootMQSNQCQLIETHEPRPLLILVEYDMCSLLLFHNTLGCANEDDWDEG*
Ga0182004_1005819013300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFSNTLGYANEDDWNEDYRYEY*
Ga0182004_1005857713300014486RootMQSNQCQLFEPHEPLVILVEYDMFSLLQFPNTSGYDNKDDWNEDYRYEY*
Ga0182004_1005888333300014486RootMQSNQCQLFEPHEPLVILVEYDMCLLLQFPNTPGYANDDD*NEDYRYEY*
Ga0182004_1006075413300014486RootMQSNQWQLIEPHEALVILVEYDMCSLLLFHNTSGYVNEDDWNEDYRYEY*
Ga0182004_1006109513300014486RootEPLVILVEYDMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1006268533300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFSNTLGYAKDDDWIEDYRYVY*
Ga0182004_1006351413300014486RootNQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1006630723300014486RootMQSNQCQLIEPHEPLVILVEYDMCSLLQFSNTSGYDNKDDWNEDYRYEY*
Ga0182004_1006793723300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFRNTSGYANDDAWNEDYRYEY*
Ga0182004_1006845313300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1007246623300014486RootMQLNQCQLFEPDEPLVILVEYDMCLLLQFPNTSGYANDDDWIEDYRYEY*
Ga0182004_1007675013300014486RootCQLFEPHEPLVILVEYDMCSLLQFPNTSGYDNEDDWNEDYRYEY*
Ga0182004_1008359413300014486RootNQCQLFEPHEPLVILVEYDMCSLLQFSNTPGYANDDDWNEDYRYEY*
Ga0182004_1008375913300014486RootMQSNHCQLFEPHEPLVILAEYDMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1009184223300014486RootMQSNQCQLFEPHEPLVILIVYDMCSLLQFPNTLGYANDDGWNKDYCYEY*
Ga0182004_1009240823300014486RootHEPLVILVEYDMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1009344023300014486RootMQSNRSQLFEPHEPLVILVEYDMCSLLQFPNTPGYAKDDDWIEDYRYEY*
Ga0182004_1009629813300014486RootSNQCQLFEPHEPLVILVEYDMCSLLQFPNTLGYANDDDWNEDYRYEY*
Ga0182004_1009718613300014486RootQCQLFEPHEPLVILVEYDMCSLLQFPNTLGYDNEDDWNEDYRYEY*
Ga0182004_1009868213300014486RootCQLFEPHEPLVILVEYDMCSLLQFPNTPGYANEDDWNEDYRYEY*
Ga0182004_1011296813300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYAKDDDWIEDYRYEY*
Ga0182004_1012055423300014486RootMQSNQSQLFEPHEPLVILVEYDMCSLLQFPNTLGYANDDDWNEDYRYEY*
Ga0182004_1012618423300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFPNTSGYDNEDDWNE
Ga0182004_1012674913300014486RootMQSNQCQLIESHGPLVILVEYDIRSLLLFHNTSGYSNEDD
Ga0182004_1012952013300014486RootMQSNLCQLFEPHEPLVILVEYYMCSLLQFPITPGYAYDDDWNEDYRYEY*
Ga0182004_1014023513300014486RootQSNQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYANDDDWSKDYRYEY*
Ga0182004_1014316113300014486RootMQSNQCQLIEPHEPLVILVEYDMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1014509813300014486RootMQLNQCQLFEPHEPLVILVEYDMCSLLQFCKTPGYANEDDWNEDYRYEY*
Ga0182004_1015710913300014486RootQCQLFEPREPLVILVEYDMCSLLQFPNTPGYANDDDWNEDYCYEY*
Ga0182004_1015791513300014486RootSNQCQLFEPHEPLVILVEYDMCSLLQFSNTPGYANDDDWNENYRYEY*
Ga0182004_1016956723300014486RootMQLNQCQLFEPHEPLVILVEYDMCSPLQFPNTPGYDNEDDWNEDYRYEY*
Ga0182004_1017218713300014486RootFEPHEPLVILVEYDMCSLLQFPNTPGYANDDDWNEDYRYEF*
Ga0182004_1018741613300014486RootFEPHEPLVILVEYDMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1019086513300014486RootNQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYDNEDDWNEDYRYEY*
Ga0182004_1019618413300014486RootMQSNQCQLFEPYEPLVILVEYDMCSLLQFPNTPGYANDDDWNEDYRYEY*
Ga0182004_1019776813300014486RootMLLNQCQLFEPHEPLVILVEYDMYSPLQFPNTSGYANDDDWNEDYRYEYYAWS*
Ga0182004_1019927413300014486RootMQLNQCQLSEPHEPLVILVEYDMCSLLQFPNTPGYAKVDAWNEDYRYEY*
Ga0182004_1020564913300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYANDDD
Ga0182004_1020572013300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYTNDDDW
Ga0182004_1022065013300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYA
Ga0182004_1022486713300014486RootMKSNQCQLIEPHEPLVILVEYDMCSLLQFPNTSGYDNEDD
Ga0182004_1024690523300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFPNTPDYANDDDWNEDYRYEY*
Ga0182004_1026142423300014486RootMQSNQCQLFEPHEPLVILVEYDMCSLLQFPNTPGYDNDD
Ga0182004_1026440713300014486RootMQSNQCQLFEPYEPLVILVEYDMCSLLQFPNTSGYDN
Ga0182004_1027392913300014486RootCQLFEPHEPLVILVEYDMCSLLQFPNTPGYANDDDWNEDYRIEY*
Ga0182004_1028026113300014486RootCQLFEPHEPLVILVEYDMCSLLQFPNTPGYANEDDWNEDYLYEY*
Ga0182004_1028231913300014486RootCQLIEPHEPLVILVEYDICSLLQFPNTSGYDNEDDWNEDYRYDY*
Ga0182004_1029880213300014486RootMQSNQCQLIEPHEPLVILVEYDMCSLLQFPNTLGYANDDDWNEDYRYEY*
Ga0182005_128041123300015265RhizosphereMQSNLCQLFEPHEPQVILVEYDMCSLLQFPNTSGNDNEDDWNEDYRYEY

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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